snupn (snupn)


Basic Information

Item Value
gene id snupn
gene name snupn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53133497 ~ 53167781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564755.2
GAAGAAAGGACCTGGAACAATGCCCGACTCTGGGAAGTATTTTGCTTGGCCAACAAAACAATCTGCTGGTAGGAGAAACGTGACATCTCAGCCCGCCTGCCTCGTTCTTCGTCAAGGCTCCCCATCACCATGGATGACCTCACCCAAGCTCTCTCGGCCAGCTTCGCCGTCTCGAAGGAGGCCAACAGCACAGCGGCCCCCCACCCACGGATGGCCCAGTACAAGACCAAGTTCAGCGTTTTGGAGCAAAGCGAACGACGACGGCGCTTTCTAGATCTGCAGAAAACGAAAAGGCTGAATTATGTGAACCATGCACGCCGTCTGGCTGATGGGGACTGGACAGGGGCAGATAGTGATGAGGAAGCAGTGGAAGTGGACAGAAAGGAAGAGGAACAGCAGAAGGAGAAGGATGCAGAGGATGATGGGATGGAGATTGAGAGGAAGAAGTTGCCAAAGTACTATGCCAACCAGCTCATGCTGTCAGAGTGGCTAGTGGACGTCCCTCAGGAACTGGATACTGATTGGCTCATGGTGGTCTGTCCCGTGGGGAAGCGCTCTCTCATCGTCGCCTCCAAGGGGTCCACTGCAGCATACACCAAAAGTGGCTACTGTGTGAACCGCTTCCCTTCTCTGTTGCCTGGAGGGAACAGACACAACTCAGCAATGGGAAAAGATTACACCATCCTGGACTGTATCTACAGTGAGGTGGAGCGGACCTACTTCATCCTGGATGTCATGTGTTGGAGGGGCCATCCAGTGTACGACTGTCCAACAGAGTTCCGGTTCTACTGGCTCCAGTCGAAAGTCCAGGAGACGGATGGCATGGCTGACATTGCCAAGAGGAACCCTtTCAAGTTTGTGAGTCTTCAAAGCACTGCCTGCTCAACGGAAGCCATTCAGCAAGCACTTGCAACAGAGTACAACTTCAATGTGGACGGACTTCTGTTTTACCACCGGCAGACCCACTACACCCCCGGCAGCACCCCTCTGGTGGGCTGGCTGCGGCCCTACATGGTCGTCGATATCCTGGGCATGGAGGTCCCGTTGGGGCCCCTCACCGCCAAGCCCGAGTATGCCGGCCACCAGCTGGCCCAGATCCGGGAGCACAAGAAGACCTCCGACCATGTCCGACCAGGGGACCTGAACGGTCGCTACGAGCTGGAGCACCTATCCACCCCCGACCAGGAAAAGGGAgatggcgacgccgccacctcacCCCGCAGCAGACCGCTGAAGGAATCTCGCATGGAGACCTCAGAGAAGAGCACAAGTTAGCTAGCCACTGAAGGCCAACTCAGTTGGCTAGCTGCTAAAGGCTAACTCTGTTCTGCTAACCAATAATATTGTAATGCTTTGCTGCTCGCCATGCCAGAAAGACAAATTACAAAAAACTTCAGACTACGTTGTGGGGAGTTTTTTTTGGACAGTTACATTGCGAGGTATTTAATGAGCGGGAGTTCAATGAAATAGCAAGTTAGTCACTGTGCTTCATTTGGAGCGCCCTGAGTTCAGGCATCGCTTGGTTCACCAGAGCTGTATCCACATTTTCATTACACTGTGCTAGTTAGTGTAATGCAGTGGATTAGACTATGTAAAATGCAAGGGCCCTGTTAAAGAAGCCGGTTTCCAGGACCTAGATTAAACGCATTCCTAGATTAAAAAACACTTTGAATTATATTTTTCCATTGAGAGACCACTGGGGCTGGGCAACTTACTTTAGTGTTGCCGAAATGAACACTGTTCTTCTGCTCATTTTGCCAGGCCTTGTGAATGGACAACTATACGTCATTGCACTTTCAGAGGTTCAATAAATAACACAGTTGGTTACACAGGCCCTTTAGACCTAAATTGACAGCGTCTGTCATGGCCAGATGTGTAACAAATGCAAAAGTTGATTAATCTGATTCTTTTAAGTGTATGtttattaaattgttttaatTGACTTTTCAA
>XM_021564748.2
CAGCCAGCTAAAAGTATTTGAATGAATGCTGCGGTGgatgtagctagctacaacagctaacgttagctgctaATGCGTATCCATTTGGTCCAGCTCGCTGTTTCTTGTCAAGTTGATACAATGTGACACTGACTGACACCCTCTCAGTTGTTACATTTTACATCACCCAGTCGTCGCGCACTAAATTGTGACATGCAGTGAGCAACGTTACAGAACATAGAAGTAACGTTGGAAACAAACGTATCCAGGACATGAATTATTCCCATGGCAGCCCCAGGCTCCCCATCACCATGGATGACCTCACCCAAGCTCTCTCGGCCAGCTTCGCCGTCTCGAAGGAGGCCAACAGCACAGCGGCCCCCCACCCACGGATGGCCCAGTACAAGACCAAGTTCAGCGTTTTGGAGCAAAGCGAACGACGACGGCGCTTTCTAGATCTGCAGAAAACGAAAAGGCTGAATTATGTGAACCATGCACGCCGTCTGGCTGATGGGGACTGGACAGGGGCAGATAGTGATGAGGAAGCAGTGGAAGTGGACAGAAAGGAAGAGGAACAGCAGAAGGAGAAGGATGCAGAGGATGATGGGATGGAGATTGAGAGGAAGAAGTTGCCAAAGTACTATGCCAACCAGCTCATGCTGTCAGAGTGGCTAGTGGACGTCCCTCAGGAACTGGATACTGATTGGCTCATGGTGGTCTGTCCCGTGGGGAAGCGCTCTCTCATCGTCGCCTCCAAGGGGTCCACTGCAGCATACACCAAAAGTGGCTACTGTGTGAACCGCTTCCCTTCTCTGTTGCCTGGAGGGAACAGACACAACTCAGCAATGGGAAAAGATTACACCATCCTGGACTGTATCTACAGTGAGGTGGAGCGGACCTACTTCATCCTGGATGTCATGTGTTGGAGGGGCCATCCAGTGTACGACTGTCCAACAGAGTTCCGGTTCTACTGGCTCCAGTCGAAAGTCCAGGAGACGGATGGCATGGCTGACATTGCCAAGAGGAACCCTtTCAAGTTTGTGAGTCTTCAAAGCACTGCCTGCTCAACGGAAGCCATTCAGCAAGCACTTGCAACAGAGTACAACTTCAATGTGGACGGACTTCTGTTTTACCACCGGCAGACCCACTACACCCCCGGCAGCACCCCTCTGGTGGGCTGGCTGCGGCCCTACATGGTCGTCGATATCCTGGGCATGGAGGTCCCGTTGGGGCCCCTCACCGCCAAGCCCGAGTATGCCGGCCACCAGCTGGCCCAGATCCGGGAGCACAAGAAGACCTCCGACCATGTCCGACCAGGGGACCTGAACGGTCGCTACGAGCTGGAGCACCTATCCACCCCCGACCAGGAAAAGGGAgatggcgacgccgccacctcacCCCGCAGCAGACCGCTGAAGGAATCTCGCATGGAGACCTCAGAGAAGAGCACAAGTTAGCTAGCCACTGAAGGCCAACTCAGTTGGCTAGCTGCTAAAGGCTAACTCTGTTCTGCTAACCAATAATATTGTAATGCTTTGCTGCTCGCCATGCCAGAAAGACAAATTACAAAAAACTTCAGACTACGTTGTGGGGAGTTTTTTTTGGACAGTTACATTGCGAGGTATTTAATGAGCGGGAGTTCAATGAAATAGCAAGTTAGTCACTGTGCTTCATTTGGAGCGCCCTGAGTTCAGGCATCGCTTGGTTCACCAGAGCTGTATCCACATTTTCATTACACTGTGCTAGTTAGTGTAATGCAGTGGATTAGACTATGTAAAATGCAAGGGCCCTGTTAAAGAAGCCGGTTTCCAGGACCTAGATTAAACGCATTCCTAGATTAAAAAACACTTTGAATTATATTTTTCCATTGAGAGACCACTGGGGCTGGGCAACTTACTTTAGTGTTGCCGAAATGAACACTGTTCTTCTGCTCATTTTGCCAGGCCTTGTGAATGGACAACTATACGTCATTGCACTTTCAGAGGTTCAATAAATAACACAGTTGGTTACACAGGCCCTTTAGACCTAAATTGACAGCGTCTGTCATGGCCAGATGTGTAACAAATGCAAAAGTTGATTAATCTGATTCTTTTAAGTGTATGtttattaaattgttttaatTGACTTTTCAA

Function

symbol description
snupn Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1).

NR:

description
snurportin-1 isoform X1

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0061015 snRNA import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004484 mRNA guanylyltransferase activity molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K13151 SNUPN, RNUT1; snurportin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564755.2 False 1950 mRNA 0.51 9 53133497 53167781
XM_021564748.2 True 2111 mRNA 0.50 9 53133713 53167781

Neighbor

gene id symbol gene type direction distance location
cspg4 cspg4 coding upstream 114685 52903191 ~ 53018812 (+)
LOC118944140 NA coding upstream 1703925 51429454 ~ 51429572 (+)
LOC118944142 NA coding upstream 1711044 51422337 ~ 51422453 (+)
LOC118944199 NA coding upstream 1711468 51421856 ~ 51422029 (+)
rl28 rl28 coding upstream 1716343 51412121 ~ 51417154 (+)
ptpn9a ptpn9 coding downstream 37300 53205081 ~ 53249227 (+)
sin3aa sin3a coding downstream 85027 53252808 ~ 53285424 (+)
wdr61 wdr61 coding downstream 183319 53351100 ~ 53370380 (+)
ireb2 ireb2 coding downstream 248332 53416113 ~ 53438769 (+)
psma4 psma4 coding downstream 276267 53444044 ~ 53466316 (+)
G157986 NA non-coding upstream 4476 53121169 ~ 53129021 (+)
G157726 NA non-coding upstream 40400 53092833 ~ 53093097 (+)
G157500 NA non-coding upstream 347912 52742500 ~ 52785585 (+)
G157499 NA non-coding upstream 391737 52741544 ~ 52741760 (+)
G157495 NA non-coding upstream 394075 52739081 ~ 52739422 (+)
G158109 crabp1 non-coding downstream 144243 53312024 ~ 53343526 (+)
G158167 NA non-coding downstream 222469 53390250 ~ 53391247 (+)
G158182 NA non-coding downstream 244739 53412520 ~ 53412744 (+)
G158212 NA non-coding downstream 329076 53496857 ~ 53497265 (+)
G156000 LOC106560791 other upstream 1309315 51816510 ~ 51824182 (+)
G155541 NA other upstream 1712375 51420847 ~ 51421122 (+)
LOC110501653 LOC106560673 other upstream 1811064 51317121 ~ 51339537 (+)
G154859 NA other upstream 1966323 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 853827 54021608 ~ 54021904 (+)
G159415 NA other downstream 1185202 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 1560515 54728296 ~ 54728860 (+)
G160569 NA other downstream 2778362 55946143 ~ 55947245 (+)
G161687 NA other downstream 3077263 56245044 ~ 56252598 (+)

Expression


Co-expression Network