LOC118940482


Basic Information

Item Value
gene id LOC118940482
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53182598 ~ 53188868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037026.1
cataagactgctgaacagttaatcaaatgactacccggTCTTTATGcttttcacccctacctacatgtacaatgtGTTCAATCACTCACCTAATCAAACCTAAgtattacctcaatcaatcactCCAACTACTTTGTACATTGACTTGGAACCAgaactccttgtatatagcctcgttattgttattttgtgttattttattgtgttacttttttcttGATCTATTTGTTAATTTTCTTACTTTGTTGAGAATGTGTTCATAAGTAAGCAtgtcacggtaaagtctacacttgttgtattctgcacatgtgacaaatacattttttttgacaCACCACAGTGTCTGTTTTCAGATGTTTTAACTAGCCCTGATATCACAAGCACGGACTATTTCCCACACAATTTCTCCCATCCAGAAAGGAGCTGATTTCACATGTTCTAACTAAGTCTGTAACCATAGGATCAGAAAAACACACACCGTACAAAAGGACTTAGCTGTATGACAAGAGTACATGCCATATCTGGCATATTGGTGTTTTTTTGTGAACACGAAACCAATCCAGTTGTCGGACAATCGGTGGGACACACACGCCagccccactcctcctctcctttacccTTTTCAGATTCCGAACATACCGGTCCTGAATCTTTCTACATGTTTCTATGACATCAGTAAATGTTGTTACACAGTATCTCCCGCCAGCTGTTGCCTTTTGTGTGCTTGTCTGAATACAACCGCATTGAAGGGTTGTAAAGGTTCTTGTATTGTCTCACCAGCTCACACAGACGCTCCTCAAAACTGGACAGAGTCGGACATAATTGCAGATAGCAAATCTCGAAATAAAAGCACAAAAAAGGAAGCTTGCAAGTAGTAGAAGCGAAGTAGCAGAATATCCATCTTTCGTGTTTATATCACAAGGGATTCCGGAAAATATGTGATGTAGACACAGGGGCGGGACTCAATCAATACTTAGCCCTCAGTCTTCACATGGAATGATACGTTGTGCATCAATTTCCAGATAGAAAAAAAACTGTTGAACGACGGAGCATATTACAAGGAGCCGTGTGACGAAAAACGTTGGCCCTTTTTGCATACTTTGTGTAGACCCTTTAAGAGAGCTCCTCGATGAGCTTGAAACCTTGATAAGCTCATTTCCTGATGGCTCACCGCTCTTCGTACTTCGCGACTTCAACGTCCCAACGTCTTTCGATACATTTATTTCCTCACCTTGCCTTTTTTGACACCACTCTTTCCcagtctctccccccacccccactcacaaggcaggcaaaaTGCTTGActtcatctttactagaggcctactaatctcactgcaaccccctccaggtctcaaCCCCCTCCAGATCACTACTTTGTTttcttttctgtctccctctcctctaaccctagtcactcagcccctacccagatggtcatgcgTGGTCAAAATCtttgctctttctctcccactactctctcctcttctatcctatcatctctcccttctgctaaatatTTCTCACgcctgtctcctgattctgcctctttgACCCTACTCTCTTCCCTTTTTGCATCTTATGACTCACACTGTCCCCTTTCATCCTGGCCGGCTTGGCCCTCCCCTCCTGCTGTGTGGCTAAGTGACTCATTGCAGCTTACAGAACAGTGCTGCAGGCAGCTGAGtgaaaatggaggaaaactaaacttccAGGGACCTTGCACTCCCTCATCTCTaacttctcttcctctgtatctgctgctaCAGCCACCTTCTATCATTCTAAATGTCAAgcttctgtctctaaccctaggaaactattTTACACCTTCTgctccctccttaatcctccaccccctccctcccttcctctctgtggACGGTTGATGACATCcactcctcattcactcagcctattgagtccactggtcccactcacacagaactaccctacacCTTTGAactctttctcccctttctcttcaGATGAAATCCTGTGACTAGTGAGGTCCGGCCGCCCAACAACTTGCACGCTCGACCCGATCCTCTCCTCGAGACCAACTCTGGAGAACTACCATGcatcacttccctcatcaacttatccctgaccactggctggtTCCCCACTGACTTCAAAATATCCAGACCGatctatccgctgccttCAATATCGTGAaacatcagatcctcctctccaccctgtcagggctgggcatctcaggctttgcacacctggattgcatCCTATATGACAGGCCACTCCTACCAGGTGGCGACACACATCTCTGTATGCCTGGCAGATACTGTATCTccgcttggatgtcggcccaccacctcaagctcaacttCGAAAAGACCGAACGTCTCCTCCTCCCAGGCCTTCCCACTCCAAAACCTTACCATCACTGTTGACAACTCTACGGTCTCCCCCTACCatagtgcaaagaaccttggcatgaccctggacaacaccatgtCATTCTCTGCAACATCTGTAGAgtatgaccctacctcacacaggaagtggcgcaGGTCTTAATCCATGCACTTGTCATCTACCATCTGGACTTCTggaactcgctgttggctgggcttcccgcttgtgccatcaaacctctgcaacttatccagaatgctgcagcccgcctggtgttcaattttcccaagttctcccatgtcaccagCTCCCcccacacactccactggcttacAGTCGAAGCTTGTATCCACTACAAGACAATGGtacttgcctacggagcagcaagaggatctgcccctccctaccttcaggctatgctcaaatcctacaccccaacccgagcactctgttctgccacctctggt
>XR_005037027.1
TGTAAAACAACGTAATACACAGGTGAAAAGTGTGATGAAAGGGGCAATAAGAGAAAAAACACAAAGTAAAACCCCACTAGCATGTGAATGAGGAAATAAGTAAAAaagaaacataaaaaaaacagtaAATTACTCATCACCCTAATGTGTGAATAAGAAAAGCACACAACGTCGTTTTTTGGGGTGAGACGGAGGGCACTGATCGATGTTCCTGTGAAAGTACATTGTCATGTCCCTGACTAACGGGACACATTGATCAACAGCAAAATACACCATACATGACTGCTGATGTTTCTGTAACTCCTGCTGACTTTTCTTTGTTTCATCCACCCGCTGCATAATGTCAGTGTCCAAAGGATCCTTAGCCGTCTTCCTCTTACGGCCAATGGAGCTGGGTCAGGGCGATGGGGCCGATGTTGATGGAGCTGCAGGGCAGAGAGCACCTGGACGATGAAATCCTGTGACTAGTGAGGTCCGGCCGCCCAACAACTTGCACGCTCGACCCGATCCTCTCCTCGAGACCAACTCTGGAGAACTACCATGcatcacttccctcatcaacttatccctgaccactggctggtTCCCCACTGACTTCAAAATATCCAGACCGatctatccgctgccttCAATATCGTGAaacatcagatcctcctctccaccctgtcagggctgggcatctcaggctttgcacacctggattgcatCCTATATGACAGGCCACTCCTACCAGGTGGCGACACACATCTCTGTATGCCTGGCAGATACTGTATCTccgcttggatgtcggcccaccacctcaagctcaacttCGAAAAGACCGAACGTCTCCTCCTCCCAGGCCTTCCCACTCCAAAACCTTACCATCACTGTTGACAACTCTACGGTCTCCCCCTACCatagtgcaaagaaccttggcatgaccctggacaacaccatgtCATTCTCTGCAACATCTGTAGAgtatgaccctacctcacacaggaagtggcgcaGGTCTTAATCCATGCACTTGTCATCTACCATCTGGACTTCTggaactcgctgttggctgggcttcccgcttgtgccatcaaacctctgcaacttatccagaatgctgcagcccgcctggtgttcaattttcccaagttctcccatgtcaccagCTCCCcccacacactccactggcttacAGTCGAAGCTTGTATCCACTACAAGACAATGGtacttgcctacggagcagcaagaggatctgcccctccctaccttcaggctatgctcaaatcctacaccccaacccgagcactctgttctgccacctctggt

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037026.1 False 2846 mRNA 0.47 3 53182598 53185801
XR_005037027.1 True 1308 mRNA 0.50 4 53182598 53188868

Neighbor

gene id symbol gene type direction distance location
snx33 snx33 coding downstream 70051 53032902 ~ 53112547 (-)
LOC118937283 NA coding downstream 402139 52779596 ~ 52780459 (-)
lingo1a LOC106560791 coding downstream 1093051 51822291 ~ 52089547 (-)
LOC110491276 LOC106560676 coding downstream 1953269 51180770 ~ 51229329 (-)
LOC110491241 LOC106560679 coding downstream 2132401 51039870 ~ 51050197 (-)
crabp1a crabp1 coding upstream 123153 53312021 ~ 53343562 (-)
slc25a44a LOC106560784 coding upstream 184364 53373232 ~ 53396108 (-)
oaz2a LOC106560783 coding upstream 279404 53468272 ~ 53490405 (-)
sv2 LOC106560774 coding upstream 634904 53823772 ~ 53851668 (-)
LOC110491563 LOC106603697 coding upstream 653798 53842666 ~ 53845012 (-)
G158057 NA non-coding downstream 11358 53170972 ~ 53171240 (-)
G158048 snupn non-coding downstream 17362 53159338 ~ 53165236 (-)
G157979 NA non-coding downstream 66103 53116259 ~ 53116495 (-)
G157898 NA non-coding downstream 183931 52997999 ~ 52998667 (-)
G157911 NA non-coding downstream 186372 52995944 ~ 52996226 (-)
G158306 ptpn9 non-coding upstream 56865 53245733 ~ 53246513 (-)
G158308 NA non-coding upstream 63989 53252857 ~ 53269371 (-)
G158393 NA non-coding upstream 207794 53396662 ~ 53396931 (-)
G158291 NA non-coding upstream 250047 53438915 ~ 53439271 (-)
G158400 NA non-coding upstream 255173 53444041 ~ 53445912 (-)
G155610 NA other downstream 1765488 51412269 ~ 51417110 (-)
G155281 LOC106560681 other downstream 2210663 50971076 ~ 50971935 (-)
G155072 NA other downstream 2601249 50579798 ~ 50581349 (-)
G159120 NA other upstream 667818 53856686 ~ 53857552 (-)
cd59 cd59-2 other upstream 780575 53969443 ~ 53971367 (-)
ambra1b LOC106560763 other upstream 1068558 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 1539431 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 2746803 55935649 ~ 56006747 (-)

Expression


Co-expression Network