crabp1a (crabp1)


Basic Information

Item Value
gene id crabp1a
gene name crabp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53312021 ~ 53343562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564834.2
AGACAAGGTCAAAActgacactagagagagagagagtcagagagtgaGACGACAACTGAGATAGAGGGAGCAAAAAGCAGACAGTAAGAAAAAGGTGTGTATATGAAGAATAGAGACACTTGCTTTATCTCGTGGCAAAGAGGAAGTTGAAGCTGCTACAGAAAGGGAgatacagaaaggagagagaggaagattgagagaggcagaggttgtgagtggagaagagagtgcaaagcagaggaaaggaggagagtgagagagagagggtataggaAGCACAGAGAGTGGAGCAGGTTCTTTGCAGGCACAGCCTTTACTGTCAGCCCCAGCAGAAATGCCCAACTTTGCCGGTACCTGGAAAATGAAGAGCAGTGAGAATTTTGACGAACTTCTCAAAGCCCTCGGCGTGAATGCCATGCTGAGGAAGGTGGCTGGGGCTGCTGCCTCCAAGCCTCACGTGGAGATCCGTCAGGACGGGGAGCAGTTCTACATCAAGACATCCACCACCGTCCGCACCACCGAGATCAACTTCCACATCGGCCAGGAGTTCGACGAGGAGACGGTGGACGGCAGGAAATGCAAGAGTCTTGCAATCTGGGAGACGGAGAACAAGATGGTGTGCAAGCAGACTCTGGTGGATGGAGATGGGCCCAAGACATACTGGACAAGAGAACTGCGAGGAGATGAGCTGATTCTGACGTTCGGGGCTGACGACGTGGTGTGCACACGGATTTACTTACGAGAGTGAAGCTTCAACAAGGCCAACCTGGACACgacagaaaatacagaaaataaaaCCAGTCAGATATGTTACAACActccttaaccccccccccattTCCCTGCCATGCTGAAAAATCAATATATAGTATATCCTACGTAATTCAGCAGCATCTGCTGCATAGTCtacataaaacataaaacaacatTTGTGTAATATGGTAATTTGTGGTGTGGTAATGTGTGTTACAGTTCTGCTATAAATGCGCTTCTCAGTGTTTGATCCATATCTACAACCACTACCTTCTTTGTTGAGTTTGTCAATATTGCAAACAGGAATAAAAATGGGATTAAAAAAAA

Function

symbol description
crabp1 Predicted to enable retinoid binding activity. Predicted to be involved in signal transduction. Predicted to be located in cytosol.

NR:

description
cellular retinoic acid-binding protein 1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17337 CRABP1; cellular retinoic acid-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564834.2 True 1080 mRNA 0.47 4 53312021 53343562

Neighbor

gene id symbol gene type direction distance location
LOC118940482 NA coding downstream 123153 53182598 ~ 53188868 (-)
snx33 snx33 coding downstream 199474 53032902 ~ 53112547 (-)
LOC118937283 NA coding downstream 531562 52779596 ~ 52780459 (-)
lingo1a LOC106560791 coding downstream 1222474 51822291 ~ 52089547 (-)
LOC110491276 LOC106560676 coding downstream 2082692 51180770 ~ 51229329 (-)
slc25a44a LOC106560784 coding upstream 29670 53373232 ~ 53396108 (-)
oaz2a LOC106560783 coding upstream 124710 53468272 ~ 53490405 (-)
sv2 LOC106560774 coding upstream 480210 53823772 ~ 53851668 (-)
LOC110491563 LOC106603697 coding upstream 499104 53842666 ~ 53845012 (-)
ppib ppib coding upstream 547347 53890909 ~ 53893848 (-)
G158308 NA non-coding downstream 42650 53252857 ~ 53269371 (-)
G158241 NA non-coding downstream 47897 53175406 ~ 53264124 (-)
G158306 ptpn9 non-coding downstream 65508 53245733 ~ 53246513 (-)
G158057 NA non-coding downstream 140781 53170972 ~ 53171240 (-)
G158048 snupn non-coding downstream 146785 53159338 ~ 53165236 (-)
G158393 NA non-coding upstream 53100 53396662 ~ 53396931 (-)
G158291 NA non-coding upstream 95353 53438915 ~ 53439271 (-)
G158400 NA non-coding upstream 100479 53444041 ~ 53445912 (-)
G158430 NA non-coding upstream 104097 53447659 ~ 53447864 (-)
G158431 NA non-coding upstream 105052 53448614 ~ 53448813 (-)
G155610 NA other downstream 1894911 51412269 ~ 51417110 (-)
LOC110491241 LOC106560679 other downstream 2262141 51039870 ~ 51050197 (-)
G155281 LOC106560681 other downstream 2340086 50971076 ~ 50971935 (-)
G155072 NA other downstream 2730672 50579798 ~ 50581349 (-)
G159120 NA other upstream 513124 53856686 ~ 53857552 (-)
cd59 cd59-2 other upstream 625881 53969443 ~ 53971367 (-)
ambra1b LOC106560763 other upstream 913864 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 1384737 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 2592109 55935649 ~ 56006747 (-)

Expression


Co-expression Network