Gene
RNA
| Item | Value |
|---|---|
| gene id | wdr61 |
| gene name | wdr61 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 53351100 ~ 53370380 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| wdr61 | Predicted to be involved in transcription elongation from RNA polymerase II promoter. Predicted to be located in cytoplasm; nucleus; and transcriptionally active chromatin. Predicted to be part of Cdc73/Paf1 complex and Ski complex. Orthologous to human WDR61 (WD repeat domain 61). |
| description |
|---|
| WD repeat-containing protein 61 |
| id | name | namespace |
|---|---|---|
| GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0035327 | transcriptionally active chromatin | cellular_component |
| GO:0055087 | Ski complex | cellular_component |
| GO:0016593 | Cdc73/Paf1 complex | cellular_component |
| id | description |
|---|---|
| K12602 | WDR61, REC14, SKI8; WD repeat-containing protein 61 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021564860.2 | True | 1517 | mRNA | 0.49 | 11 | 53351100 | 53370380 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sin3aa | sin3a | coding | upstream | 65676 | 53252808 ~ 53285424 (+) |
| ptpn9a | ptpn9 | coding | upstream | 101873 | 53205081 ~ 53249227 (+) |
| snupn | snupn | coding | upstream | 183319 | 53133497 ~ 53167781 (+) |
| cspg4 | cspg4 | coding | upstream | 332288 | 52903191 ~ 53018812 (+) |
| LOC118944140 | NA | coding | upstream | 1921528 | 51429454 ~ 51429572 (+) |
| ireb2 | ireb2 | coding | downstream | 45733 | 53416113 ~ 53438769 (+) |
| psma4 | psma4 | coding | downstream | 73668 | 53444044 ~ 53466316 (+) |
| rbpms2a | LOC106560779 | coding | downstream | 266925 | 53637305 ~ 53651854 (+) |
| LOC110491473 | ap3b2 | coding | downstream | 329438 | 53699818 ~ 53797088 (+) |
| cpeb1a | LOC106560740 | coding | downstream | 426846 | 53797226 ~ 53823634 (+) |
| G158109 | crabp1 | non-coding | upstream | 7574 | 53312024 ~ 53343526 (+) |
| G157986 | NA | non-coding | upstream | 222079 | 53121169 ~ 53129021 (+) |
| G157726 | NA | non-coding | upstream | 258003 | 53092833 ~ 53093097 (+) |
| G157500 | NA | non-coding | upstream | 565515 | 52742500 ~ 52785585 (+) |
| G157499 | NA | non-coding | upstream | 609340 | 52741544 ~ 52741760 (+) |
| G158167 | NA | non-coding | downstream | 19870 | 53390250 ~ 53391247 (+) |
| G158182 | NA | non-coding | downstream | 42140 | 53412520 ~ 53412744 (+) |
| G158212 | NA | non-coding | downstream | 126477 | 53496857 ~ 53497265 (+) |
| G158218 | NA | non-coding | downstream | 131202 | 53501582 ~ 53501878 (+) |
| G156000 | LOC106560791 | other | upstream | 1526918 | 51816510 ~ 51824182 (+) |
| G155541 | NA | other | upstream | 1929978 | 51420847 ~ 51421122 (+) |
| rl28 | rl28 | other | upstream | 1933982 | 51412121 ~ 51417154 (+) |
| LOC110501653 | LOC106560673 | other | upstream | 2028667 | 51317121 ~ 51339537 (+) |
| G154859 | NA | other | upstream | 2183926 | 51165415 ~ 51167174 (+) |
| G158778 | LOC106560766 | other | downstream | 651228 | 54021608 ~ 54021904 (+) |
| G159415 | NA | other | downstream | 982603 | 54352983 ~ 54353388 (+) |
| G159889 | LOC106562215 | other | downstream | 1357916 | 54728296 ~ 54728860 (+) |
| G160569 | NA | other | downstream | 2575763 | 55946143 ~ 55947245 (+) |
| G161687 | NA | other | downstream | 2874664 | 56245044 ~ 56252598 (+) |
