sv2 (LOC106560774)


Basic Information

Item Value
gene id sv2
gene name LOC106560774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53823772 ~ 53851668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565100.2
GTAGGTTCAGTTcactcagagaggaagaggcgaagcaagaGGGGTAACTTAGCCCAAAATCTGTCTACTCCGGCATGTGGCGTTTTTCTGCTCACCAAGTGAttagtttttgtatggaggtcaattagagtgtcgaatttggttaaCAAAAAGTTGAATGGTTTATTTGCTACATGTGACTTATTTGATATAATCGAAGTTTTGTAATGCGTGTAGGCGTGTACTGATATACGTAGGACATGTGACAttccggcaactttgagaaaaaacaccTCATATCGGAGTTGTGGGTGTTGTTTCATTCACGTTTAGCCCTcccattggctagaatggtcccatgATCTTGCCTCCTCCGTCTgccttcctttttttttttaagacatTTATTTTCATAGTTAGAGCGGCCACTAGAGTATCTGTTCAATATAATGGATAATTTTTTGGTTCACTCCATAACTGTGTGGATAAATATGTGGTTCTCTGGTAATACAGTTACTATGCATCAAGAAAGTCTCCACTGACATGTAGTCTCTACAAAACAAGAGGTCGTACTGGTGCTTTAGCTTGATGAAACAGCCGGCTATGTCTCGACATATCCATATAGAGGCGTCCGGCGATGATGCAGCACGAGTGCCACTTCTCACTAGCCACCTGGAGCTAGCTAGCCTCGACTCGGATGAAGgtGAAGTTATTTTTGAGAGGTGTATTGGAGATAATGCAAATGATGTTCAGAGAAGTACACAAAGAAAACGAACATGAGGAAGCTGTTGAGGAAGCAGGTTTTGGTTTGTTCCATGGGCTCCTGTTGGTGGTGTGTGGATGGGCCAATGCCAGTGATGCGGTGGAGATCCTGTGTGTTTCCTTTCTGCTGCCTACGGCCCGCTGTGACCTCCATCTCAGCTCCTCAGACATGGGGTTACTGACGGCCAACATTTTCCTCGGAATGATGATAGGTGGGTACATGTGGGGTTACCTGGCTGACCAGAGGGGGCGCCAGAAGGTCTTGGTGATGTCCCTGACAGTGAACGGAGTGTTTGGAGCGCTGGCCAGCTTTGCCCCAAGGTTCTGGCTCTTCCTTCTACTACGGTTCATCAGCGGTGTAGGGGTGGGAGGTTCAATCCCGGTCATCTTCTCCTACTTTTCTGAGTTTCAGCCCCGGCTGAAGAGGGGGGCAATGATAAGTGCTCTGGCCACCTTCTGGATGGCAGGGAATATTCTGGCAGCAGGCCTGGCGTGGTTGGTCATTCCCCGGACCTGGGTCCGCTTTTCTCTGGGTGGGCTGGACTTCCAGAGCTGGAGGCTGTTTGTGGTGCTGTGCTCTGTCCCCAGCCTCACATCGGCACTCATCTTCAGTCTGGCCATGCCTGAGAGCCCCCGGTTCCTCATGGAGGCTGGCCGTGAGACAGAAGCCCTACGTGTCTTCTGCAGGATGTTTGCAATAAACCACAGAGGCAGTCTCAAGACCTTCTCGATTTGTGGGCTGCATATCCCTTctgagaagaaagagagggagactagGAGAGGTGGAACACACACTCTGCGCTTTGTCAACCTCAAACAGTGCCTGGCACCAATAAGACAGCTGTTTGTTGGAGAGTTGGCCTCTAGAAGTGTATGTCTGGTCATCATATTCTACTGCATCTCATTTGGatacTATGGGCTGTGGATGTGGTTCCCAGAGCTTTTCAAGAGAGCAGAGGATGGAGGCTCACCCTGTGCCAATGTGTCTCGCTTACAAAGCCATGACAACCAAAGCTGCTACCCAGTCAAAACGGCAGTATACATGGAGGGCTTTGTCACTGCAGCCTCAAACCTACCAGGGAACATCTTCACCGTTCTCCTAATGGACGTCATTGGAGGAAAGGCCCTGCTTTGTTGCAGCCTATTGttgtccagtgtgagtgtgttcCTCATCTACGAGGTGAAGACGAAAGCACAGAGTCTGCTCATCTCCTGTGTTTTTAGTGGAGTGTCTGTGGTGGCCTGGAATTCCTTGGACGTGTTGGGCACTGAGCTCTACCCCACCCAGCTACGGTCTacttgaccaaggagagtgatggaatgttGCATCAAATGACTTGGCCTCCATCATCacctgacttcaacccaattgagatggtttgggatgagttggaccgcagagcgaactgcttcaagactgttggaaaagcattccaggtgaagctggttgagagaatgccaagcatgtgcaaagcgtggctactttgaaatatctaaaatatattttgatttgtttagtacATGATTCCCGTATGTGTAATTttatagctttgatgtcttcactattatactacaatgtataaaatagcacaaataaagaaaaacccttgaat
>XM_021565090.2
GTAGGTTCAGTTcactcagagaggaagaggcgaagcaagaGGGGTAACTTAGCCCAAAATCTGTCTACTCCGGCATGTGGCGTTTTTCTGCTCACCAAGTGAttagtttttgtatggaggtcaattagagtgtcgaatttggttaaCAAAAAGTTGAATGGTTTATTTGCTACATGTGACTTATTTGATATAATCGAAGTTTTGTAATGCGTGTAGGCGTGTACTGATATACGTAGGACATGTGACAttccggcaactttgagaaaaaacaccTCATATCGGAGTTGTGGGTGTTGTTTCATTCACGTTTAGCCCTcccattggctagaatggtcccatgATCTTGCCTCCTCCGTCTgccttcctttttttttttaagacatTTATTTTCATAGTTAGAGCGGCCACTAGAGTATCTGTTCAATATAATGGATAATTTTTTGGTTCACTCCATAACTGTGTGGATAAATATGTGGTTCTCTGGTAATACAGTTACTATGCATCAAGAAAGTCTCCACTGACATGTAGTCTCTACAAAACAAGAGGTCGTACTGGTGCTTTAGCTTGATGAAACAGCCGGCTATGTCTCGACATATCCATATAGAGGCGTCCGGCGATGATGCAGCACGAGTGCCACTTCTCACTAGCCACCTGGAGCTAGCTAGCCTCGACTCGGATGAAGgtGAAGTTATTTTTGAGAGGTGTATTGGAGATAATGCAAATGATGTTCAGAGAAGTACACAAAGAAAACGAACATGAGGAAGCTGTTGAGGAAGCAGGTTTTGGTTTGTTCCATGGGCTCCTGTTGGTGGTGTGTGGATGGGCCAATGCCAGTGATGCGGTGGAGATCCTGTGTGTTTCCTTTCTGCTGCCTACGGCCCGCTGTGACCTCCATCTCAGCTCCTCAGACATGGGGTTACTGACGGCCAACATTTTCCTCGGAATGATGATAGGTGGGTACATGTGGGGTTACCTGGCTGACCAGAGGGGGCGCCAGAAGGTCTTGGTGATGTCCCTGACAGTGAACGGAGTGTTTGGAGCGCTGGCCAGCTTTGCCCCAAGGTTCTGGCTCTTCCTTCTACTACGGTTCATCAGCGGTGTAGGGGTGGGAGGTTCAATCCCGGTCATCTTCTCCTACTTTTCTGAGTTTCAGCCCCGGCTGAAGAGGGGGGCAATGATAAGTGCTCTGGCCACCTTCTGGATGGCAGGGAATATTCTGGCAGCAGGCCTGGCGTGGTTGGTCATTCCCCGGACCTGGGTCCGCTTTTCTCTGGGTGGGCTGGACTTCCAGAGCTGGAGGCTGTTTGTGGTGCTGTGCTCTGTCCCCAGCCTCACATCGGCACTCATCTTCAGTCTGGCCATGCCTGAGAGCCCCCGGTTCCTCATGGAGGCTGGCCGTGAGACAGAAGCCCTACGTGTCTTCTGCAGGATGTTTGCAATAAACCACAGAGGCAGTCTCAAGACCTTCTCGATTTGTGGGCTGCATATCCCTTctgagaagaaagagagggagactagGAGAGGTGGAACACACACTCTGCGCTTTGTCAACCTCAAACAGTGCCTGGCACCAATAAGACAGCTGTTTGTTGGAGAGTTGGCCTCTAGAAGTGTATGTCTGGTCATCATATTCTACTGCATCTCATTTGGatacTATGGGCTGTGGATGTGGTTCCCAGAGCTTTTCAAGAGAGCAGAGGATGGAGGCTCACCCTGTGCCAATGTGTCTCGCTTACAAAGCCATGACAACCAAAGCTGCTACCCAGTCAAAACGGCAGTATACATGGAGGGCTTTGTCACTGCAGCCTCAAACCTACCAGGGAACATCTTCACCGTTCTCCTAATGGACGTCATTGGAGGAAAGGCCCTGCTTTGTTGCAGCCTATTGttgtccagtgtgagtgtgttcCTCATCTACGAGGTGAAGACGAAAGCACAGAGTCTGCTCATCTCCTGTGTTTTTAGTGGAGTGTCTGTGGTGGCCTGGAATTCCTTGGACGTGTTGGGCACTGAGCTCTACCCCACCCAGCTACGGTCCTCCGCTCTGGGCTTCTTCACAGGAATAGGCAGAGTGGCAGCCATCATGGGTAACATAGTCTTTGGCCAGCTGGTGGATACCAACTGTGCGATACCAGTTCTACTTGTGTCTGCTTTGCTGCTGACAGGGGGGATCACTGCCTTGCGCCTTCCACGCACTAAACAGGCAGAGCTCACCTGAGGCCTCTGTGAAATGAAGTCCAGAAGACACACTTTTTTTCCCTGCTCATAGTCCTCGCCAAGGGTTATTCCCTGAATCTAGTCTACCTAGAGATGCCTTTTTCCTATCATGACCAAAGATTGACGTAGAAAAGATTTTATAAAACGGATGTTGTGAAATGCTGGATTGCACAAGTGCACTTTGAGAAACCGTGTACCTTAATGGTTTCTCAATGATTAACAAGTCATTGACCAGAGCTAATACAGTGAGCTACAAAAGTAtggggacagtgacacatttttttgttgtgtaagtagtcaaaagttgagtatttgatcacatattcctagcatgcaataaTTACATAAAGCTTCTGAATCTACAaagttgttggatgcatttgctgttttggTGGTTTCATTCCTATTGGTCACAAAATAAtcaatggtaaataatgtattgtcattttggatGAACTTTTattgtgaataagaatatgtttctaaacacttctacattaatgtgaatTAGTGTTGGCATGGTATACCGGTACCACAGTAATATCACGGTACCAAAACATCATGATACCAACATTTATAGATTATCGTTTCATACTATCACATTTTTCAGTCCTACCGATCTAAGGCACCGGCGCCTTTTATAAAAATGTGTATCAAGTCAGTTTTGTTTATAAattctgtaaaaaaataaataaatgcaactA

Function

NR:

description
synaptic vesicle glycoprotein 2B-like isoform X1

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565100.2 False 2354 mRNA 0.48 13 53823772 53851668
XM_021565090.2 True 2921 mRNA 0.46 13 53834023 53851668

Neighbor

gene id symbol gene type direction distance location
oaz2a LOC106560783 coding downstream 333367 53468272 ~ 53490405 (-)
slc25a44a LOC106560784 coding downstream 427664 53373232 ~ 53396108 (-)
crabp1a crabp1 coding downstream 480210 53312021 ~ 53343562 (-)
LOC118940482 NA coding downstream 634904 53182598 ~ 53188868 (-)
snx33 snx33 coding downstream 711225 53032902 ~ 53112547 (-)
ppib ppib coding upstream 39241 53890909 ~ 53893848 (-)
adpgk adpgk coding upstream 79661 53930055 ~ 53942241 (-)
cd59 cd59-2 coding upstream 117782 53969443 ~ 53971367 (-)
prdm11 LOC106560765 coding upstream 126260 53977928 ~ 53995578 (-)
phf21ab LOC106560766 coding upstream 144426 53996094 ~ 54058156 (-)
G159018 NA non-coding downstream 132780 53690544 ~ 53690992 (-)
G158952 NA non-coding downstream 197688 53566391 ~ 53626084 (-)
G158523 NA non-coding downstream 262621 53560850 ~ 53561151 (-)
G158511 NA non-coding downstream 270013 53553289 ~ 53553759 (-)
G158509 NA non-coding downstream 270621 53552920 ~ 53553151 (-)
G159122 NA non-coding upstream 10991 53862659 ~ 53864812 (-)
G159137 NA non-coding upstream 32470 53884138 ~ 53885912 (-)
G159138 NA non-coding upstream 37002 53888670 ~ 53889204 (-)
G159144 NA non-coding upstream 48608 53900276 ~ 53900475 (-)
G159145 NA non-coding upstream 49234 53900902 ~ 53901266 (-)
G155610 NA other downstream 2406662 51412269 ~ 51417110 (-)
LOC110491241 LOC106560679 other downstream 2773892 51039870 ~ 51050197 (-)
G155281 LOC106560681 other downstream 2851837 50971076 ~ 50971935 (-)
G155072 NA other downstream 3242423 50579798 ~ 50581349 (-)
G159120 NA other upstream 5018 53856686 ~ 53857552 (-)
ambra1b LOC106560763 other upstream 405758 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 876631 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 2084003 55935649 ~ 56006747 (-)

Expression


Co-expression Network