LOC110491563 (LOC106603697)


Basic Information

Item Value
gene id LOC110491563
gene name LOC106603697
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53842666 ~ 53845012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565111.2
TATCAAGCACCTTTGGAGGGAGGGCAGTAGCACATCACCAAGGAGCAGCTTGAGTTCCTCATAGATTGTCATATGACCATCAGACAAATGGCAGATGTTCTCAATGTGTTGCAATCTGTGGTCAAGCGGCGCATGAGGTGGAGGATTGTTATCCATGGTGCTGTGGATGGTTACAGCAGACTTGTTGGGTTTCTGAAGGCCTCTGACAATAACAGGAGTGTCAGTCATGGAGTCATTCGAAGCAGCCATCACCAGCTACGGAGTACCATCCCGGGTGAGATAAACACCGGATGGTGAAAACAACCGTATCTGTGCCTTCATGGAGCAGTTCAGGGATGGTGAGAGGGGAAGTGCCCTCAGAGGAAGGTGCACTCACAACCAGAGGATAGAACGGCTGTGGGGGGACATCTGGCATGTAGTCTCCAACGTTTACCATTACCTGTTCACCTTCTTGGAGATGGAGCAGATCATCGACATCAACaatgaggtgtacctgtgggcaCTGCACTTTGTGTTCCTGCCACGGGTGAACAGAGATCTTGCTGTGTTTGCCAGTCAGTGGAACCGCCATGGGCTGAGGACTGACCAACGGCAGTCACCTCTGCAGTTGTTCGTCTCGGGTTCCCTGGCAATGCAGAGGGCCAATCTGACAGCAGTAAGGGATTTGTTCGCCCCAAATTCAACCATCAGCTCTCAAGCCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCGGCTCCTCCAACCACCACCTCGGCTCCCCCAACCACTGGCACCGCAGCTCTTTTATTGGTCGGAATGGGTGATTGTGCCACAAATCCAGTTCACCATCAGCAACACACAGATGGAACTGTTGCGGACAATAATTCCATTGGAAGGCCCCAGAGGCAGCCTGGGAGTTGTCTATCTACAGAGGGTTATGGCAGTTATATCTTCAGCGCCACTCGTTCCTACTCCAACCTGACCTACTACATACTCCCCTACTGGGATGAGGGATTGGACGCTATATCTTCAGCGCCACTCGTTTATTTTTATAAtactattatacattttataatacTAACATTCCCGCTCTTTCACACACTGTATGATTTGGTCTCTTTAAAGGTACGCTAGATATCTTCAACTCTAAACGGATGAGGACCAGGTGGCCTTAACCTTTGTTAAGTACTTCCTCATTCCAGTATGATTCCGTTTGGTCATATTTGGAGAGAGTCAGGTACTGTTAAGATATACGGCCTATTGTTACTGTATTTTGCTCTATGGCACTTTAGCACAGCATTCCATCTGCTGACACAATATTTGTCTTCCACTCAGTACAACACGACCCAGGAGAGGCCTACTGCAAGCACTGGATTGGAACCTTCAGAGCGTGCCTGCTgtgggaggacaacagaacattCTGAATGGACATTATTAAAACAGAACTTACATTTTTGTAATGCCCAATTGGGACTTTTATAAATTGTTCCAATAAATGTGTGGAGAACGCCCtatagttaaaaaaatatataactatGAAGATAGTGGTTTGCCCCCTTTACATTTTATATAATTGTGATTAACAGGAACCTATTACAGGTAGTAACATAACATTGTTGACACATTGTGACAGCTCAAATTATGTGGTTGAAGATGGACTAGTGCAGAGCTCCTAACCTTGTTCTTGGAGAGCTACTGTCTTGTAAGTTCATGCCTACCCTAATCTAGTGGACCTGATTTTAATAATTACCTGCTTAatgaggttagttacaactgaggttggattgaaaacctacaggagggtagctctccatgaacagggttggagagcctagGACTAATGGATTTAGTTCTTAGATCAATGTATTTGAAATTTGCAGTTCCCAGAAGTGGAGCTGTCACTTAATGCAGTGGATGGGAAGCCTTATTTCATGTAGTTCTAATTAAATGATAATGGCTGAA
>XR_005037055.1
TATCAAGCACCTTTGGAGGGAGGGCAGTAGCACATCACCAAGGAGCAGCTTGAGTTCCTCATAGATTGTCATATGACCATCAGACAAATGGCAGATGTTCTCAATGTGTTGCAATCTGTGGTCAAGCGGCGCATGAGGTGGAGGATTGTTATCCATGGTGCTGTGGATGGTTACAGCAGACTTGTTGGGTTTCTGAAGGCCTCTGACAATAACAGGAGTGTCAGTCATGGAGTCATTCGAAGCAGCCATCACCAGCTACGGAGTACCATCCCGGGTGAGATAAACACCGGATGGTGAAAACAACCGTATCTGTGCCTTCATGGAGCAGTTCAGGGATGGTGAGAGGGGAAGTGCCCTCAGAGGAAGGTGCACTCACAACCAGAGGATAGAACGGCTGTGGGGGGACATCTGGCATGTAGTCTCCAACGTTTACCATTACCTGTTCACCTTCTTGGAGATGGAGCAGATCATCGACATCAACaatgaggtgtacctgtgggcaCTGCACTTTGTGTTCCTGCCACGGGTGAACAGAGATCTTGCTGTGTTTGCCAGTCAGTGGAACCGCCATGGGCTGAGGACTGACCAACGGCAGTCACCTCTGCAGTTGTTCGTCTCGGGTTCCCTGGCAATGCAGAGGGCCAATCTGACAGCAGTAAGGGATTTGTTCGCCCCAAATTCAACCATCAGCTCTCAAGCCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCTGCTCCTCCAACCACCACCTCGGCTCCTCCAACCACCACCTCGGCTCCCCCAACCACTGGCACCGCAGCTCTTTTATTGGTCGGAATGGGTGATTGTGCCACAAATCCAGTTCACCATCAGCAACACACAGATGGAACTGTTGCGGACAATAATTCCATTGGAAGGCCCCAGAGGCAGCCTGGGAGTTGTCTATCTACAGAGGGTTATGGCAGTTATATCTTCAGCGCCACTCGTTCCTACTCCAACCTGACCTACTACATACTCCCCTACTGGGATGAGGGATTGGACGCTATATCTTCAGCGCCACTCGTTTATTTTTATAAtactattatacattttataatacTAACATTCCCGCTCTTTCACACACTGTATGATTTGGTCTCTTTAAAGGTACGCTAGATATCTTCAACTCTAAACGGATGAGGACCAGGTGGCCTTAACCTTTGTTAAGTACTTCCTCATTCCAGTATGATTCCGTTTGGTCATATTTGGAGAGAGTCAGTACAACACGACCCAGGAGAGGCCTACTGCAAGCACTGGATTGGAACCTTCAGAGCGTGCCTGCTgtgggaggacaacagaacattCTGAATGGACATTATTAAAACAGAACTTACATTTTTGTAATGCCCAATTGGGACTTTTATAAATTGTTCCAATAAATGTGTGGAGAACGCCCtatagttaaaaaaatatataactatGAAGATAGTGGTTTGCCCCCTTTACATTTTATATAATTGTGATTAACAGGAACCTATTACAGGTAGTAACATAACATTGTTGACACATTGTGACAGCTCAAATTATGTGGTTGAAGATGGACTAGTGCAGAGCTCCTAACCTTGTTCTTGGAGAGCTACTGTCTTGTAAGTTCATGCCTACCCTAATCTAGTGGACCTGATTTTAATAATTACCTGCTTAatgaggttagttacaactgaggttggattgaaaacctacaggagggtagctctccatgaacagggttggagagcctagGACTAATGGATTTAGTTCTTAGATCAATGTATTTGAAATTTGCAGTTCCCAGAAGTGGAGCTGTCACTTAATGCAGTGGATGGGAAGCCTTATTTCATGTAGTTCTAATTAAATGATAATGGCTGAA

Function

NR:

description
uncharacterized protein PB18E9.04c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565111.2 False 2086 mRNA 0.47 2 53842666 53845012
XR_005037055.1 True 1988 mRNA 0.47 3 53842666 53845012

Neighbor

gene id symbol gene type direction distance location
oaz2a LOC106560783 coding downstream 352261 53468272 ~ 53490405 (-)
slc25a44a LOC106560784 coding downstream 446558 53373232 ~ 53396108 (-)
crabp1a crabp1 coding downstream 499104 53312021 ~ 53343562 (-)
LOC118940482 NA coding downstream 653798 53182598 ~ 53188868 (-)
snx33 snx33 coding downstream 730119 53032902 ~ 53112547 (-)
ppib ppib coding upstream 45897 53890909 ~ 53893848 (-)
adpgk adpgk coding upstream 86317 53930055 ~ 53942241 (-)
cd59 cd59-2 coding upstream 124438 53969443 ~ 53971367 (-)
prdm11 LOC106560765 coding upstream 132916 53977928 ~ 53995578 (-)
phf21ab LOC106560766 coding upstream 151082 53996094 ~ 54058156 (-)
G159018 NA non-coding downstream 151674 53690544 ~ 53690992 (-)
G158952 NA non-coding downstream 216582 53566391 ~ 53626084 (-)
G158523 NA non-coding downstream 281515 53560850 ~ 53561151 (-)
G158511 NA non-coding downstream 288907 53553289 ~ 53553759 (-)
G158509 NA non-coding downstream 289515 53552920 ~ 53553151 (-)
G159122 NA non-coding upstream 17647 53862659 ~ 53864812 (-)
G159137 NA non-coding upstream 39126 53884138 ~ 53885912 (-)
G159138 NA non-coding upstream 43658 53888670 ~ 53889204 (-)
G159144 NA non-coding upstream 55264 53900276 ~ 53900475 (-)
G159145 NA non-coding upstream 55890 53900902 ~ 53901266 (-)
G155610 NA other downstream 2425556 51412269 ~ 51417110 (-)
LOC110491241 LOC106560679 other downstream 2792786 51039870 ~ 51050197 (-)
G155281 LOC106560681 other downstream 2870731 50971076 ~ 50971935 (-)
G155072 NA other downstream 3261317 50579798 ~ 50581349 (-)
G159120 NA other upstream 11674 53856686 ~ 53857552 (-)
ambra1b LOC106560763 other upstream 412414 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 883287 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 2090659 55935649 ~ 56006747 (-)

Expression


Co-expression Network