snx22 (LOC106560771)


Basic Information

Item Value
gene id snx22
gene name LOC106560771
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53867516 ~ 53890738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950532.1
TTTATTTTGTcttcaatgtttattgaaaacgaATGAGCACTCAAATCCATCGTTAGTTGTTGGTTAGCTATCTTGCATATACGTAACGTCAAAATACctcaagacatggtatcaagaacaagatgaaacgAGCCACCTGCAATTCTCCACAAGCCCCATTTGAAGCGTGCGCATCGTTTGACCTCTTCAGAGTTGAGATATTGTTCAATGGAAGGAAACACTTTGTGCTCAGAAGACACAGTGAATTCCAGACCCTTCACAGAAAGCTGAAGAAGATTCTGCATCCCCCAGACTTCCCCAGCAAGAGGAGCACCCATCTGAGAACCAAGCCTCTTGAGCAGAGGAGGCAGCAGCTGGAGGACTACATTCAGGATATAATTTACCAGTATGAAGAAGTCCCTCAGGTGCTGCTGGACTTCCTGCATGTGAAACATTTCCACTCTGGGAACAAAATAAGCAGCCTTGAATCATTTGATGATAGTGACCCTCAGGGATATGGCTGTCAGCTGCAGCATCAGCGTGTGGTGGGATTCTGTCGTGACCCCTATCTCCTGGAGTCCCCCTCAGATCTGCCGGACATCGTCACGGATGGGGTCCTGCAGGGCTTGTACCCCCGAGACATCCGTGTCAGCTTCACAGCCTGCACAAAACCCAGCCTCCCAGAGAGACCCAGTCTGGCTCCAGTGATTCCCTCTATATAGTGGCAGCCCATGCAGAAGTCCTGACACTAGGATCTGTGGATTTTAAAATGGCCTTGATAGTAATTTGGATGAATGTCGTGTCTGAATCAGCAACCAATGGAGGCCCATTTGCTTGTATAGTACCATACAATAGAGAAAGTTTACATTACTCTGGGTGCTTGACTAAAGTCACAGGCCAATTGAAGAGGTTCTAGAAAGCAATGTCATAAGTTGGTGGTTCCTGTTGATGAGTCCCCCATGAACTGCCTTAGGTCATTTTGAGTGACTTATCGGTCACCTGCCAGCTCAATGTCCATATGTTCCAGCTATCCACATGCAACAATTTGATTCTCACtaatagggtggcaggtagcctagtggttagcatgTCAGGCCAGTAAGTGAacggttgctggttcgaatccccgagctgactgaaatgctgtgcccttgagcaagggcTGCACCTATCCAGTGTGGCAACAAACCATTGGTTTATGCATGAAAGCAATAGTCTGCCTGGAATGAGTTTCACAATCACTGGCATTTCATATGTAAATGTTTTTACATGTTAAGCTTTATATTAAAATGTAATACATGACCCATGTTCATATATAAAAATGTT
>XM_021565156.2
AGATTCTCCAAATACTTTGTGGGAGGAGCATTGGAGAGTGTCTCAAACGTTGCCCTGAATTTACGGTAACCGAGTTGATATTGTCACGTTGGCCATTATCGCTTTATGTTCTCTTACCTGGATTTCCCCCGAATGTTTAGAAGGGGACATTGTTAAAGATTGAATACAGAAAAGCCGCAGCACCACTCAGTAGGAAGGCAATTGGACAGTTTGCGCTCAGAAAAGTCCGATGAATGGCTGAAGATTCCCCTATGATTGAGGTATCGATTCCGTCGCTGGAGCGAGAGGTAGACGAGTCGGGGAAATTGAGAAAGCTCTTCAGAGTTGAGATATTGTTCAATGGAAGGAAACACTTTGTGCTCAGAAGACACAGTGAATTCCAGACCCTTCACAGAAAGCTGAAGAAGATTCTGCATCCCCCAGACTTCCCCAGCAAGAGGAGCACCCATCTGAGAACCAAGCCTCTTGAGCAGAGGAGGCAGCAGCTGGAGGACTACATTCAGGATATAATTTACCAGTATGAAGAAGTCCCTCAGGTGCTGCTGGACTTCCTGCATGTGAAACATTTCCACTCTGGGAACAAAATAAGCAGCCTTGAATCATTTGATGATAGTGACCCTCAGGGATATGGCTGTCAGCTGCAGCATCAGCGTGTGGTGGGATTCTGTCGTGACCCCTATCTCCTGGAGTCCCCCTCAGATCTGCCGGACATCGTCACGGATGGGGTCCTGCAGGGCTTGTACCCCCGAGACATCCGTGTCAGCTTCACAGCCTGCACAAAACCCAGCCTCCCAGAGAGACCCAGTCTGGCTCCAGTGATTCCCTCTATATAGTGGCAGCCCATGCAGAAGTCCTGACACTAGGATCTGTGGATTTTAAAATGGCCTTGATAGTAATTTGGATGAATGTCGTGTCTGAATCAGCAACCAATGGAGGCCCATTTGCTTGTATAGTACCATACAATAGAGAAAGTTTACATTACTCTGGGTGCTTGACTAAAGTCACAGGCCAATTGAAGAGGTTCTAGAAAGCAATGTCATAAGTTGGTGGTTCCTGTTGATGAGTCCCCCATGAACTGCCTTAGGTCATTTTGAGTGACTTATCGGTCACCTGCCAGCTCAATGTCCATATGTTCCAGCTATCCACATGCAACAATTTGATTCTCACtaatagggtggcaggtagcctagtggttagcatgTCAGGCCAGTAAGTGAacggttgctggttcgaatccccgagctgactgaaatgctgtgcccttgagcaagggcTGCACCTATCCAGTGTGGCAACAAACCATTGGTTTATGCATGAAAGCAATAGTCTGCCTGGAATGAGTTTCACAATCACTGGCATTTCATATGTAAATGTTTTTACATGTTAAGCTTTATATTAAAATGTAATACATGACCCATGTTCATATATAAAAATGTT

Function

NR:

description
sorting nexin-24-like isoform X2

GO: NA

KEGG:

id description
K17941 SNX22_24; sorting nexin-22/24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950532.1 False 1305 mRNA 0.46 7 53867516 53890738
XM_021565156.2 True 1437 mRNA 0.46 7 53872926 53890738

Neighbor

gene id symbol gene type direction distance location
cpeb1a LOC106560740 coding upstream 43882 53797226 ~ 53823634 (+)
LOC110491473 ap3b2 coding upstream 70428 53699818 ~ 53797088 (+)
rbpms2a LOC106560779 coding upstream 215662 53637305 ~ 53651854 (+)
psma4 psma4 coding upstream 401200 53444044 ~ 53466316 (+)
ireb2 ireb2 coding upstream 428747 53416113 ~ 53438769 (+)
LOC110491599 NA coding downstream 3396 53894134 ~ 53898191 (+)
bbs4 LOC106560769 coding downstream 15196 53905934 ~ 53926823 (+)
kcnj11l irk11 coding downstream 51115 53941853 ~ 53969163 (+)
dgkzb LOC106560764 coding downstream 210029 54100767 ~ 54191587 (+)
itga11b itga11 coding downstream 474180 54364918 ~ 54455954 (+)
G158707 NA non-coding upstream 41793 53825402 ~ 53825723 (+)
G158706 NA non-coding upstream 42740 53824537 ~ 53824776 (+)
G158618 NA non-coding upstream 177113 53690202 ~ 53690403 (+)
G158617 NA non-coding upstream 177920 53689174 ~ 53689596 (+)
G158616 NA non-coding upstream 178536 53688680 ~ 53688980 (+)
G158742 NA non-coding downstream 24236 53914974 ~ 54010809 (+)
G158696 cd59-2 non-coding downstream 78716 53969454 ~ 53970875 (+)
G158776 NA non-coding downstream 125017 54015755 ~ 54016247 (+)
G158781 NA non-coding downstream 136920 54027658 ~ 54028060 (+)
G158783 LOC106560766 non-coding downstream 138886 54029624 ~ 54029860 (+)
G156000 LOC106560791 other upstream 2043334 51816510 ~ 51824182 (+)
G155541 NA other upstream 2446394 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2450398 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2545083 51317121 ~ 51339537 (+)
G154859 NA other upstream 2700342 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 130870 54021608 ~ 54021904 (+)
G159415 NA other downstream 462245 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 837558 54728296 ~ 54728860 (+)
G160569 NA other downstream 2055405 55946143 ~ 55947245 (+)
G161687 NA other downstream 2354306 56245044 ~ 56252598 (+)

Expression


Co-expression Network