Gene
RNA
| Item | Value |
|---|---|
| gene id | ppib |
| gene name | ppib |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 53890909 ~ 53893848 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ppib | Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in several structures, including axis; hatching gland; notochord; pectoral fin musculature; and polster. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 9. Orthologous to human PPIB (peptidylprolyl isomerase B). |
| description |
|---|
| peptidyl-prolyl cis-trans isomerase B |
| id | name | namespace |
|---|---|---|
| GO:0000413 | protein peptidyl-prolyl isomerization | biological_process |
| GO:0006457 | protein folding | biological_process |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | molecular_function |
| id | description |
|---|---|
| K03768 | PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021565135.2 | True | 1122 | mRNA | 0.49 | 5 | 53890909 | 53893848 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sv2 | LOC106560774 | coding | downstream | 39241 | 53823772 ~ 53851668 (-) |
| LOC110491563 | LOC106603697 | coding | downstream | 45897 | 53842666 ~ 53845012 (-) |
| oaz2a | LOC106560783 | coding | downstream | 400504 | 53468272 ~ 53490405 (-) |
| slc25a44a | LOC106560784 | coding | downstream | 494801 | 53373232 ~ 53396108 (-) |
| crabp1a | crabp1 | coding | downstream | 547347 | 53312021 ~ 53343562 (-) |
| adpgk | adpgk | coding | upstream | 37481 | 53930055 ~ 53942241 (-) |
| cd59 | cd59-2 | coding | upstream | 75602 | 53969443 ~ 53971367 (-) |
| prdm11 | LOC106560765 | coding | upstream | 84080 | 53977928 ~ 53995578 (-) |
| phf21ab | LOC106560766 | coding | upstream | 102246 | 53996094 ~ 54058156 (-) |
| chrm4b | LOC106560739 | coding | upstream | 315210 | 54209058 ~ 54210956 (-) |
| G159138 | NA | non-coding | downstream | 1705 | 53888670 ~ 53889204 (-) |
| G159137 | NA | non-coding | downstream | 4997 | 53884138 ~ 53885912 (-) |
| G159097 | NA | non-coding | downstream | 15188 | 53830967 ~ 53875721 (-) |
| G159122 | NA | non-coding | downstream | 26097 | 53862659 ~ 53864812 (-) |
| G159018 | NA | non-coding | downstream | 199917 | 53690544 ~ 53690992 (-) |
| G159144 | NA | non-coding | upstream | 6428 | 53900276 ~ 53900475 (-) |
| G159145 | NA | non-coding | upstream | 7054 | 53900902 ~ 53901266 (-) |
| G159146 | NA | non-coding | upstream | 8846 | 53902694 ~ 53902900 (-) |
| G159157 | NA | non-coding | upstream | 21137 | 53914985 ~ 53922960 (-) |
| G159120 | NA | other | downstream | 33357 | 53856686 ~ 53857552 (-) |
| snx33 | snx33 | other | downstream | 778618 | 53032902 ~ 53112547 (-) |
| G155610 | NA | other | downstream | 2473799 | 51412269 ~ 51417110 (-) |
| LOC110491241 | LOC106560679 | other | downstream | 2841029 | 51039870 ~ 51050197 (-) |
| G155281 | LOC106560681 | other | downstream | 2918974 | 50971076 ~ 50971935 (-) |
| ambra1b | LOC106560763 | other | upstream | 363578 | 54213602 ~ 54268394 (-) |
| G159890 | LOC106562215 | other | upstream | 834451 | 54728299 ~ 54728860 (-) |
| LOC110491905 | ppip5k1 | other | upstream | 2041823 | 55935649 ~ 56006747 (-) |
| G161823 | NA | other | upstream | 2407507 | 56301355 ~ 56302095 (-) |
