LOC110491599


Basic Information

Item Value
gene id LOC110491599
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53894134 ~ 53898191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468855.2
ggtttcGATTACAATTATGTCAATAAATCATGCccccttttgtcaaactccacgTGTAAATTGCCCCTCCCACTTCGTGGATTGAACTCAATTGTTTCTTCGTCCTAAACCAAAGCGATCATGGCCGTTTGAGACTGAAAAGCCCTATACGGATTGACCATGCAATGCATGCTTTCGGCTAGGTTGAAGGTGGGTATATTTTAAGGATGCACACCAAACAACTATGGTTTGCATGCCCTGCAGAAGGACTCCATCATGCAAGTTTTATTCCGTTGGTCCCCAGTGGATGTCAGTATACCGGCCGACCATAGACTGCTGGTTATGTACGCATAATTGGGTGCCATACTGATCCCGTGGTCATGAACGGATGCTGGGACCTACCAGAAGGAGCAACGCTTgtcaggcaagacctcagaataaGTGTTTCACAACAAGTTTCACAACAAGTACTCTTGTGACACCTCATCCATTGTTGCCAGTCTCCCTCAACTCTGATGAAAAGGACACACCGTCATGAGGCCTCTGACCGTGAGTTACTGCCCTGACGACACAGATGGCTTCATCGACAGGCACTTCCAGTCAACACCACCTAATAAGATTGGCTGCTGCAGTTGTTTGAGAGATGTCCAGTTTGCAGCTGAACGTGCAGCATAGAGAAGACAAGCAAGGGGTCCCTCATCAGCATCATGCAGACATGCCCTCACAGTgagcattcctatgaatggaacagttgTGACTGACAAGTATCCGACCAGCGACCTTCACTTGTCAGCGGCAACAGCTTTCACAGGATCATCATTTGTACAAATACAAAGACTTAATTATTTTGATACATTTGATTACATGTAAACTGACATTAGTTGTTGCTTATTTTCTACTTCTTAGTTGCGTATAATGTCCAGGGCATAACCTAGCCTGGTTGAACCAGCCTGATCCCTGTGTTCACCATTCTATTTCACTTCAAATTTTATAtctgaagtgaaataaaaaaaggtgAATGGAGCAATCAGGATATTTCTACCAAGCtaatcataaccaccattgataatgtaatcagtgctgtgtgtgtgtgaccgaccAGTATCTTTGAGGGACCAGTAGCTGATCTACGCTACTATGTCCATCAATAGGGCTCTGGCAAAGACCTCACCTCCAGCCTCACATCTTGCCTGCTCACCAACAGTCTTTGATGGGAAGAACAGAATTAGGTTTAGGCTGACCTGTTTAAACTTCAACATAGGTGAGATCTGACAcacatccccctcttcaaagggggtgacactctagacccaaactgctacagatctatatctattctaccctgcctttctaaggtctttgaaagccaagttaacaaacagattaccgaccatttcaaa
>XR_005037059.1
AATTATGTCAATAAATCATGCccccttttgtcaaactccacgTGTAAATTGCCCCTCCCACTTCGTGGATTGAACTCAATTGTTTCTTCGTCCTAAACCAAAGCGATCATGGCCGTTTGAGACTGAAAAGCCCTATACGGATTGACCATGCAATGCATGCTTTCGGCTAGGTTGAAGGTGGGTATATTTTAAGGATGCACACCAAACAACTATGGTTTGCATGCCCTGCAGAAGGACTCCATCATGCAAGTTTTATTCCGTTGGTCCCCAGTGGATGTCAGTATACCGGCCGACCATAGACTGCTGGTTATGTACGGTCAGTATATTTTGATAACCATTATCACGATCATAGCTGACACAGATAGCTAATGTCAGCCTACTTCAATACAACTCGGATTTagcttggaaaaataacatttcaAAAGAAGACAAATACTTActtaaatacaattattttgtcATGATTGTGATGTCGCCATATTAACTTCAGATGCAGATTTGAAGGGACCGCtgtattttagctagctaacattagcattgtTAGCTATTTTTGACAAACTTTGATAGTAACAGTAATGAGTTGCAACCGATCTAAAGTAAATTTGACATAATTATGGCAAAGTTGTTTGCAACTAATTATTTGCCTACTTTGGCAATGTCATATTGCCATGCCACTCGAAATTAGTGTAATTTAGACGAAACAATCACAATAGCCTCTGAGGCGCAGCACATGTCTTCTAGGGCACAAATAAATATTGGATGCAGTAATGGCGATACTAGCGAACTCATGTCTGACTACAACAGTGTCCCAACTAGCAGTAACACACTCAGTCAATCTACATCTGTAAAGCATAGAAGTAGCTTTCAAACGAGATTACCTTATTTCTCGAGCTGTGTTTATAATTTAGGTAGGATGACAATCGTTGACCCTGTTTTTATGTTAAACAAAGCATAATTGGGTGCCATACTGATCCCGTGGTCATGAACGGATGCTGGGACCTACCAGAAGGAGCAACGCTTgtcaggcaagacctcagaataaGTGTTTCACAACAAGTTTCACAACAAGTACTCTTGTGACACCTCATCCATTGTTGCCAGTCTCCCTCAACTCTGATGAAAAGGACACACCGTCATGAGGCCTCTGACCGTGAGTTACTGCCCTGACGACACAGATGGCTTCATCGACAGGCACTTCCAGTCAACACCACCTAATAAGATTGGCTGCTGCAGTTGTTTGAGAGATGTCCAGTTTGCAGCTGAACGTGCAGCATAGAGAAGACAAGCAAGGGGTCCCTCATCAGCATCATGCAGACATGCCCTCACAAAACATGGATGGGGGCTGCACATGGAGACTTGCAAGATGATGGTATGAagtccagactgacagacaggcttaatacttgtctctgaatggagagacctggcactctgcaTTAAAATTTTACTTGCATTGTC
>XR_002468853.2
ttgtcaaactccacgTGTAAATTGCCCCTCCCACTTCGTGGATTGAACTCAATTGTTTCTTCGTCCTAAACCAAAGCGATCATGGCCGTTTGAGACTGAAAAGCCCTATACGGATTGACCATGCAATGCATGCTTTCGGCTAGGTTGAAGGTGGGTATATTTTAAGGATGCACACCAAACAACTATGGTTTGCATGCCCTGCAGAAGGACTCCATCATGCAAGTTTTATTCCGTTGGTCCCCAGTGGATGTCAGTATACCGGCCGACCATAGACTGCTGGTTATGTACGGTCAGTATATTTTGATAACCATTATCACGATCATAGCTGACACAGATAGCTAATGTCAGCCTACTTCAATACAACTCGGATTTagcttggaaaaataacatttcaAAAGAAGACAAATACTTActtaaatacaattattttgtcATGATTGTGATGTCGCCATATTAACTTCAGATGCAGATTTGAAGGGACCGCtgtattttagctagctaacattagcattgtTAGCTATTTTTGACAAACTTTGATAGTAACAGTAATGAGTTGCAACCGATCTAAAGTAAATTTGACATAATTATGGCAAAGTTGTTTGCAACTAATTATTTGCCTACTTTGGCAATGTCATATTGCCATGCCACTCGAAATTAGTGTAATTTAGACGAAACAATCACAATAGCCTCTGAGGCGCAGCACATGTCTTCTAGGGCACAAATAAATATTGGATGCAGTAATGGCGATACTAGCGAACTCATGTCTGACTACAACAGTGTCCCAACTAGCAGTAACACACTCAGTCAATCTACATCTGTAAAGCATAGAAGTAGCTTTCAAACGAGATTACCTTATTTCTCGAGCTGTGTTTATAATTTAGGTAGGATGACAATCGTTGACCCTGTTTTTATGTTAAACAAAGCATAATTGGGTGCCATACTGATCCCGTGGTCATGAACGGATGCTGGGACCTACCAGAAGGAGCAACGCTTgtcaggcaagacctcagaataaGTGTTTCACAACAAGTTTCACAACAAGTACTCTTGTGACACCTCATCCATTGTTGCCAGTCTCCCTCAACTCTGATGAAAAGGACACACCGTCATGAGGCCTCTGACCGTGAGTTACTGCCCTGACGACACAGATGGCTTCATCGACAGGCACTTCCAGTCAACACCACCTAATAAGATTGGCTGCTGCAGTTGTTTGAGAGATGTCCAGTTTGCAGCTGAACGTGCAGCATAGAGAAGACAAGCAAGGGGTCCCTCATCAGCATCATGCAGACATGCCCTCACAGTgagcattcctatgaatggaacagttgTGACTGACAAGTATCCGACCAGCGACCTTCACTTGTCAGCGGCAACAGCTTTCACAGGATCATCATTTGTACAAATACAAAGACTTAATTATTTTGATACATTTGATTACATGTAAACTGACATTAGTTGTTGCTTATTTTCTACTTCTTAGTTGCGTATAATGTCCAGGGCATAACCTAGCCTGGTTGAACCAGCCTGATCCCTGTGTTCACCATTCTATTTCACTTCAAATTTTATAtctgaagtgaaataaaaaaaggtgAATGGAGCAATCAGGATATTTCTACCAAGCtaatcataaccaccattgataatgtaatcagtgctgtgtgtgtgtgaccgaccAGTATCTTTGAGGGACCAGTAGCTGATCTACGCTACTATGTCCATCAATAGGGCTCTGGCAAAGACCTCACCTCCAGCCTCACATCTTGCCTGCTCACCAACAGTCTTTGATGGGAAGAACAGAATTAGGTTTAGGCTGACCTGTTTAAACTTCAACATAGGTGAGATCTGACAcacatccccctcttcaaagggggtgacactctagacccaaactgctacagatctatatctattctaccctgcctttctaaggtctttgaaagccaagttaacaaacagattaccgaccatttcaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468855.2 False 1379 mRNA 0.45 4 53894134 53896406
XR_005037059.1 False 1458 mRNA 0.42 4 53894146 53898191
XR_002468853.2 True 1974 mRNA 0.42 3 53894173 53896406

Neighbor

gene id symbol gene type direction distance location
snx22 LOC106560771 coding upstream 3396 53867516 ~ 53890738 (+)
snx1a LOC106560773 coding upstream 25861 53852828 ~ 53868273 (+)
cpeb1a LOC106560740 coding upstream 70500 53797226 ~ 53823634 (+)
LOC110491473 ap3b2 coding upstream 97046 53699818 ~ 53797088 (+)
rbpms2a LOC106560779 coding upstream 242280 53637305 ~ 53651854 (+)
bbs4 LOC106560769 coding downstream 7743 53905934 ~ 53926823 (+)
kcnj11l irk11 coding downstream 43662 53941853 ~ 53969163 (+)
dgkzb LOC106560764 coding downstream 202576 54100767 ~ 54191587 (+)
itga11b itga11 coding downstream 466727 54364918 ~ 54455954 (+)
cln6b cln6 coding downstream 575832 54474023 ~ 54486909 (+)
G158732 NA non-coding upstream 4895 53888904 ~ 53889239 (+)
G158731 NA non-coding upstream 5292 53888544 ~ 53888842 (+)
G158707 NA non-coding upstream 68411 53825402 ~ 53825723 (+)
G158706 NA non-coding upstream 69358 53824537 ~ 53824776 (+)
G158618 NA non-coding upstream 203731 53690202 ~ 53690403 (+)
G158742 NA non-coding downstream 16783 53914974 ~ 54010809 (+)
G158696 cd59-2 non-coding downstream 71263 53969454 ~ 53970875 (+)
G158776 NA non-coding downstream 117564 54015755 ~ 54016247 (+)
G158781 NA non-coding downstream 129467 54027658 ~ 54028060 (+)
G158783 LOC106560766 non-coding downstream 131433 54029624 ~ 54029860 (+)
G156000 LOC106560791 other upstream 2069952 51816510 ~ 51824182 (+)
G155541 NA other upstream 2473012 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2477016 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2571701 51317121 ~ 51339537 (+)
G154859 NA other upstream 2726960 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 123417 54021608 ~ 54021904 (+)
G159415 NA other downstream 454792 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 830105 54728296 ~ 54728860 (+)
G160569 NA other downstream 2047952 55946143 ~ 55947245 (+)
G161687 NA other downstream 2346853 56245044 ~ 56252598 (+)

Expression


Co-expression Network