XLOC_020648 (fblim1)


Basic Information

Item Value
gene id XLOC_020648
gene name fblim1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 158112 ~ 164944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040845
ctctctcgtctcCACTGATCGTGAGCACAGAGGAGTTGATCTGCTGTTCAGCTCCATCATGGCGTCGGCGGCTCCACAGAAGCGTATGGTATCGTCTGTCTTCATCACACTGGCGTCCCCGTCCAGAGCCACAGTCACTCCCACTGCACACGGCCAGCACAGCCCAGCCCGAGCCCAGAACACAGCCCCCACGGGCCCCTGCAGAACACAcgTTGTGAGTGGTGTTCCTCCTGCCCCCCGTGACCCCTGTGACCCCAAGCGTGACCTGTCTGGTGGCCCAGCAGAGGATGGAGCTGTGCTGAGATCAGCGCCCTCTGCTGGAGGACAAGAGAAGCagcagtcagacacacacacacactgcagcgatgtgTGTGGGTTCTGCCGTAAGCAGGTGTCTCCCTGTGAGTCGGCCATTGTGGCTCTGAACCGCTGCTATCACTCCGGCTGTTTCCAGTGTCGTCAGTGCTGCGCCCCTCTGGCCGGAAGACAGTACTACAGCCGCTCCGGCCTGCCACTGTGTGAAGCCTGCCATCAGGCCAGTCTGGAGCCCTGCTGGGCCTGTGGTGATGTCATCAAAGATCATGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTCTGCACCACCTGCCGACAACCAATCGGAGAGCAGCGATTCGCACAGGGGGAAGTGGGAGAGGTGTACTGCCTGCAGGACTactacagGAAGTACGCTCCTCAGTGCGGTGTGTGTGGGCTGATGATCATCCCGCGTGACGACGGAACTGACAGCTTCACCGTCGAGTGTTTGGGTCGCTCGTACCATGAAGACTGCTACCgctgtcagGTGTGTGCGGTTCTGCTGTCCCCGGAGCCGGATGAGCGAGGCTGCCACCCGCTGGACGGACAGATGCTCTGCAGGACCTGCCACAGCGCCCTGATCCACTGAACACACTGCActgagagaacacacacacacacacacacacacacacacacacactcacagcacaTGGCAGACACTATTACTCTTCATGTGTGTCTCAGACCGGTCTGCTGTTTACAGGGTTTTCTTGTTCCtctgttcaatcattcattctctttcagctgagtctctttattaatcaggggtcaccacaatggaatgaaccgccaactattccagcatatgttttacacagcggatacccttccagctgcaacccatcactgggaaacacccatacacactcattcacacacactacggctaaTTCAGCTGATCAGTTCccctgcaccacatgtctttttgggcccacgccaacacggggagaaagcACAATATTATATTGCCGTATTTAAATAAAGATATAAACGCTGA
>TCONS_00040846
CAGAGCTGGTCCGTTCCCGCCCCTCATGGCAGTTTTAGGTGTCCATTGGTCTAACTGTGTGTCCTGATCCTCTCTGATAGGCCAGTCTGGAGCCCTGCTGGGCCTGTGGTGATGTCATCAAAGATCATGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTCTGCACCACCTGCCGACAACCAATCGGAGAGCAGCGATTCGCACAGGGGGAAGTGGGAGAGGTGTACTGCCTGCAGGACTactacagGAAGTACGCTCCTCAGTGCGGTGTGTGTGGGCTGATGATCATCCCGCGTGACGACGGAACTGACAGCTTCACCGTCGAGTGTTTGGGTCGC

Function

symbol description
fblim1 Predicted to enable filamin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be active in focal adhesion and stress fiber. Orthologous to human FBLIM1 (filamin binding LIM protein 1).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0001725 stress fiber cellular_component
GO:0005925 focal adhesion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0031005 filamin binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-061013-662 Predicted to enable filamin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be active in focal adhesion and stress fiber. Orthologous to human FBLIM1 (filamin binding LIM protein 1).

Ensembl:

ensembl_id ENSDARG00000071558

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040845 False 1348 mRNA 0.56 8 158112 164944
TCONS_00040846 True 350 lncRNA 0.58 2 160577 161002

Neighbor

gene id symbol gene type direction distance location
XLOC_020647 si:ch1073-335m2.2 coding downstream 2485 130967 ~ 155627 (-)
XLOC_020646 NA coding downstream 56665 101082 ~ 101447 (-)
XLOC_020645 ndufaf3 coding downstream 63593 85597 ~ 94519 (-)
XLOC_020644 CABZ01101813.1 coding downstream 77579 76469 ~ 80533 (-)
XLOC_020643 CABZ01085139.1 coding downstream 100935 56644 ~ 57177 (-)
XLOC_020649 slc25a34 coding upstream 19726 184670 ~ 188112 (-)
XLOC_020650 fbxo42 coding upstream 26987 191931 ~ 193234 (-)
XLOC_020651 ora1 coding upstream 43700 208644 ~ 209741 (-)
XLOC_020652 zgc:66156 coding upstream 60993 225937 ~ 237651 (-)
XLOC_020653 zgc:66156 coding upstream 89446 254390 ~ 263117 (-)
XLOC_020641 NA non-coding downstream 121996 27146 ~ 36116 (-)
XLOC_020657 NA non-coding upstream 148766 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 227675 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 494973 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 535269 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 568300 733244 ~ 735244 (-)

Expression


Co-expression Network