coro2bb (coro2b)


Basic Information

Item Value
gene id coro2bb
gene name coro2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54303365 ~ 54339835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565490.2
AGCATCATCACAACAGCAGCAGCTATTGGCTCCTTCCACATAGTGAGTGAGAGTGCAGCTtcactccctcttcctctcccctctctctctttttctctctctcgttgtgtCTCTCAGATTAAAAGGAGTTCCTGTGCGATAAGAGCACGTTGGTGGAACACCCACACGCCTCCACTGCATGGCTCTCACAAAGATATCATGGCGTCCAACATACAGAAGCTCAAAGTTTCGGAATGTGTATGGCAAGGCAGGCAACCGAGAGCAGTGCTTCGATGGCATCCCCATCACCAGAAACGTTCATGATAACCACTTCTGTGCTGTCAATGCCAAGTTCCTGGCCATTGTCACTGAGACTGCAGGTGGAGGGTCCTTTCTCGTCATCCCTGTCAACAAGGCTGGGCGAATCGACCCTCACCAACCTAAAGTGTGCGGCCACCAGGGAGGCGTGCTGGACATCAAATGGAATCCCTTCATCGACAACATCATAGCCTCCTGCTCAGAGGACTGCTCTGTGCGGATATGGGAGATTCCAGAGGGAGGGCTGAGGCGGAACATGTCCGAGGCGGTGCTGGAGTTGTATGGACACAGCCGACGAGTGGGTCTCATAGAGTGGCACCCCACCTGTAGTGGTATCCTCTTCAGCGCTGGCTACGACTTTAAGATCCTGATCTGGAACCTGGAGGTGGGAGGTCCAGTGAAGATGATCGACTGTCACTCAGACGTGGTGCTCTGCATGTCCTTCAACACTGACGGCAGCCTGCTGGCCACCAGCTGCAAGGACAAACACCTGCGTGTGATCGAGCCTCGCTCGGGCAAGGTCCTGCAGGAAGCTGACTGTAAGAGCCACAGGGTGAACAGAGTGGTGTTTCTGGGCAACATGAAGCGCCTGGTGACCACCGGAGTCTCTCGATGGAACACTAGACAAGTGGCACTGTGGGATCAGGAGGACCTGTCCATGCCCATCATAGAGGAGGAGATTGATGGGCTTTCTGGGCTGCTCTTCCCTTTCTATGATTCTGACACACACATGCTCTACCTGGCAGGCAAGGGAGACGGTAACATCAGATACTATGAGGTCGGCACAGAGAAGCCCTACCTGCAGTACCTAATGGAGTTCAGGTCCCCGGCTCCACAGAAAGGCCTGGGAGTGATGCCAAAACATGGGCTGGACGTGGCGGCCTGCGAGGTGTTCCGCTTCTACAAGCTGGTGACTCTGAGGGGCCTCATCGAGCCCATCTCCATGATAGTGCCACGAAGGTCCGAGACATACCAGGAGGACATCTACCCTATGACAGCAGGCACAGAACCAGCCCTCACTGCAGATGAGTGGCTGAGTGGGATGGACAGAGagcCAGTGTTGATGTCCCTAAAGTCTGGATACAAGCGCCCCTGCCAGAAGGCCTTCAAGGCCCCTGTGAGGGAGAGGAAGACCATGGTGATGAATGGCCTGCTGGAGAGTATTCCACCCAAGACAGAGAACGAGCTCATGCGCACGTTCTTCAGGCAGCAAGATGAGCTAAAGAGGTTGAGAGAGGAGCTGGTGCAGAAAGACGTTAGACTCCAACAGCTGGAGCTGGAGCTCAACAACCTGCGGAACAACTCCAACAAACTGTGACCTTTGACCtggctgacccctgacctcccCACTCTGACCTCCTGCCCACTCAGGGAGAGAGACCACTGGTGGCCGACTCCCTTCCCTTCTTCCCAAAGTGTGCACCCCGGGTGGAAACTCCCTCTGTCTAGTCCATGCGGGTCCAGTGAGTGAGCCCGTGCTCACTTCTGGGAGAAGGGTAAGGAATCGGAAGGCAACCTCTGTCACACTGTGTCCCTCACCCTGAGAGCGGGTCACCAAGCCCTGAACACTGCCAAAAATATACCCAGAACCACCCTACCTGGCTGCACCTCTTCATCCCTTCTCCATGTTCCAAAGAACTTCACCTCCTTCAGCAACAGAACCTTAGTATGTCCCCATTCAGCCAAAGCACCAAGACCAACTGTGGTAGATAGCTCTGCTTAGAATTTACTCAAGTTGACAGGATCAGTTATGTGGGGAGTGAAGCCATTGTTTCCCTTTAACTTCAAGCAGGCTCTGTCCTCAAGACATGAAATGTCATGTCTTGCGACTTGAAGGCCCTTGAATATGAGGACTTGTGAGGACTGTAGTTGCATAGCAGGGGTATTGCAGGTGTATCGCTGGGTTGAGCATGTGTAGTCTGTAGTCTCTGCAGTGGTCCTATCGGAGGATGGGGAAAGAGATGAGGCAATAGAGTGGTAACCAAGCCTATTCAAACAGATGGCTTGTCTAGTACTATTCATCCCATACATTATTCATCCTATTACTTATGACGAATCTGCGATAGAGCCTCATCATATTTTCACTTTATAGTTACATTTCGCCATTAAATGAACATTCTgactaaaaaaataaataaatacatgagcGCCATGTTAGACGaaaggcaaaaacagactttaaAGCCATATTGGGTGACAAATCTTTGCTGACTTGGTAGCAGGTTGACCACAACATGAACATGACTGAGGCTTTCCCAAGGTAGAAGGGACCCCTGAGGGATGTGTGTATGCCCCTCGACCACTGAGGGACCATGTCCTCGCAGACGTCTGTATGAAGTCGGTAGAGATGCTCGCAATTCACGTTGGCCACACGTAGCTACTGCGTGACCACTCTGTGGTCATGTGTGACTACCGATCAGAGGTAACTAGCAACGGCAAACACTTATCATTTGACTGTATAATACAGTACGCCCGTAACCGGCAATGATACTGGTATATTTATATTGTAGTACATGATGATAGAACGATAGGAGAGAGTATTTATTGCAAGTAAAACAAATAATGTCATGTACGGAGAGAAAAATGATAGGGTAAGTGTATTAAGGATATAGCCATAGGCAGCAGTGGGTTTAGTAAGATACCCAAGGTAAATGTATGACTGCTAGAGGATGTTATTTCTTAATGACTGTAACATAATATCATAATATGTCTTCCTGAAGTTGCCCCTCTCCCTAAATAAATGCGTTGACACCATAA

Function

symbol description
coro2b Enables talin binding activity and vinculin binding activity. Acts upstream of or within several processes, including negative regulation of cell-substrate adhesion; regulation of actin cytoskeleton organization; and regulation of establishment of protein localization. Located in focal adhesion.

NR:

description
coronin-2B-like isoform X2

GO: NA

KEGG:

id description
K13887 CORO2; coronin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565490.2 True 3054 mRNA 0.50 12 54303365 54339835

Neighbor

gene id symbol gene type direction distance location
nox5 nox5 coding downstream 4419 54281716 ~ 54298946 (-)
ambra1b LOC106560763 coding downstream 34971 54213602 ~ 54268394 (-)
chrm4b LOC106560739 coding downstream 92409 54209058 ~ 54210956 (-)
phf21ab LOC106560766 coding downstream 245209 53996094 ~ 54058156 (-)
prdm11 LOC106560765 coding downstream 307787 53977928 ~ 53995578 (-)
fem1b fem1b coding upstream 118830 54458665 ~ 54462837 (-)
LOC110491804 LOC106560756 coding upstream 181307 54510925 ~ 54525000 (-)
ciao2a fam96a coding upstream 507757 54847592 ~ 54852144 (-)
si:ch211-284k5.2 LOC106560792 coding upstream 639082 54978917 ~ 55001034 (-)
LOC110491875 NA coding upstream 1336214 55676049 ~ 55698528 (-)
G159353 NA non-coding downstream 1595 54301555 ~ 54301770 (-)
G159344 NA non-coding downstream 9245 54293908 ~ 54294120 (-)
G159343 NA non-coding downstream 11118 54291905 ~ 54292247 (-)
G159342 NA non-coding downstream 11529 54291591 ~ 54291836 (-)
G159408 NA non-coding upstream 4778 54344613 ~ 54344852 (-)
G159418 NA non-coding upstream 14440 54354275 ~ 54354496 (-)
G159425 NA non-coding upstream 18637 54358472 ~ 54358708 (-)
G159589 NA non-coding upstream 129482 54469317 ~ 54469653 (-)
G159591 NA non-coding upstream 130535 54470370 ~ 54470688 (-)
cd59 cd59-2 other downstream 332026 53969443 ~ 53971367 (-)
G159120 NA other downstream 445813 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 1191074 53032902 ~ 53112547 (-)
G155610 NA other downstream 2886255 51412269 ~ 51417110 (-)
G159890 LOC106562215 other upstream 388464 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 1595836 55935649 ~ 56006747 (-)
G161823 NA other upstream 1961520 56301355 ~ 56302095 (-)
G162657 NA other upstream 2487461 56827296 ~ 56830576 (-)
G162745 NA other upstream 2774732 57114567 ~ 57117150 (-)

Expression


Co-expression Network