cln6b (cln6)


Basic Information

Item Value
gene id cln6b
gene name cln6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54474023 ~ 54486909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579388.2
ATGCTGAGGTCGTGCATAGACTTCTGTGGGCTGAATAACATCGCTGTGAAGAACAAGTATCCCTTGCCACTCATCAGCTCTGCTTTTGCCCCTCTCCATGGTGCCACGGTGTTCACCAAACTCGCCCtccggaatgcctaccaccttgtCCGCGAGTGGAAACCGGCGTTCAACACACCACTGAGTATTTGCCGTCTGGCAGCACCTCTCACCGCCACCTCCACTCCGTTCCACTGGACCCCTGAGGCAGAGGCAGCTTTCCTGGAACTAAAATGCCGCTTCACTTCTGCTCCGATCCTCACCAAGCCAGACCCAGAACTCCAGTTCACCGTGGAGGTGGATGCCTCCGACACCGGGAGAAATTATGACATTAGTAACTGGGAACCCCTGGCAGCGAAGCTAGCTCTTGAGGAATGGCGTCACTGGCTGGAGGGTTCTATTCTCCCCTTCGTCGTGTGGACGGACCACAAACCTGTCCTTCACTGGAAATGGCATGGGTCCAAAGACATGGACTCATCTCTGCTGAAGCCCAAATTCCACCTGGACCTGTGGGTCAGTTTCACCATCCAGAACTGGCTGCTGGACTTCGGGAGGCCCATTGTCATGATCATCCTCCCTCTAGAGTGGTTCCCCCTGAACAGACCCAGTGCTGGGGACTACTTCCACATGGCTTACAACATCATCACACCCTTCCTGCTTCTCAAGCTGATCGAGCGTAGCCCCAAGACCCTGCCCCACGCCGCTGTGTACCTGTGCATCATCACCTTTGTGATGGGCGCCAGCATCCACCTGGTGGGTGACTCCATTAACCATCGCCTCCTGTTGAGTGGTTACCAGCTCCACTTGTCTGTCAGAGAGAACCCCATCATCAAGAACCTCCAGCCTGCCTCTCTGATAGATTCCTTTGAGCTACTTTACTATTATGATGAAAAGCTTGGCCATTCTATGTGGTATGTTCccttcttcctcatcctcttcctctactTCACTGGTTGCTTCACACACatcaaggaggagaagaggatgcCGCTCGCTGCTTGGTTTCTTCTCGCTCCCAGCGCCGTCTACTATTGGTACCTGATCACAGAGGGCCAGATCTTCATCCTCTTCATCTTCACCTTCTTTGCCATGACTGCCACAGTGATGCACCAGAAACGTAAAGGCTTTGTCCCTGATAGCAATGGGCTCTTCCTGCTCTACAGTTTCTCCATCGCCCTGGGTCTGGTCAGCATCTGGGTGGCTTGTCTCTGGAGCGACCAGGTCCTCCGCAAGAAATACCGCGGGGTCATCTACATACCGGAGCCTTGGGCCTTCTACACTCTGCACATCAGAGACAAGGGGGCATCAGCTTGAGCAAGGCGAATTGCAGAATCGGTAATCTTGATCACATAATGAGTAGCTACTTTGGATGCAGGTGCACAGAAGAGACAATCAGCGTGTTGGATGGAATCAGTTTGAGCAAGCGAGGCACAGAATCACTTATCTTGATCACCCATAATATAATGAGTAGCTATCTGGGATGCGAGGTGATTTGTAGATTTTTCCCATTCCGACTGCAATGCAGTCGATCTCCAACACGCACAATCACTAGCTGCTCAAATGACTCACTCTAGTCATGTGTGCTGGGAGGaaaagaaagagggatagagcACGAGTTTACCTACTATGCAACAAAACTACAAAAGTAAGAGATGTTGAGGGGTACTGTACTCTTGGGACTGTGTCAAGAACTTGAATTATCTCCGAAGTGAAGtaactttttttttgttattaaGGTTTAAGTTACCTAAGATAAATTAACTTGATTGCGTA

Function

symbol description
cln6 Enables lysophosphatidic acid binding activity; protein homodimerization activity; and sulfatide binding activity. Involved in several processes, including cholesterol metabolic process; ganglioside metabolic process; and lysosomal lumen acidification. Located in several cellular components, including early endosome; endoplasmic reticulum lumen; and membrane raft. Implicated in neuronal ceroid lipofuscinosis; neuronal ceroid lipofuscinosis 4A; and neuronal ceroid lipofuscinosis 6.

NR:

description
ceroid-lipofuscinosis neuronal protein 6 homolog

GO: NA

KEGG:

id description
K12359 CLN6; ceroid-lipofuscinosis neuronal protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579388.2 True 1812 mRNA 0.51 10 54474023 54486909

Neighbor

gene id symbol gene type direction distance location
itga11b itga11 coding upstream 18069 54364918 ~ 54455954 (+)
dgkzb LOC106560764 coding upstream 282436 54100767 ~ 54191587 (+)
kcnj11l irk11 coding upstream 504860 53941853 ~ 53969163 (+)
bbs4 LOC106560769 coding upstream 547200 53905934 ~ 53926823 (+)
LOC110491599 NA coding upstream 575832 53894134 ~ 53898191 (+)
calml4b calml4 coding downstream 4816 54491725 ~ 54504596 (+)
spg11 spg11 coding downstream 365903 54852812 ~ 54944780 (+)
LOC110491832 LOC106560753 coding downstream 464992 54951901 ~ 54976149 (+)
LOC118940499 NA coding downstream 513530 55000439 ~ 55024185 (+)
znf609a LOC106560750 coding downstream 754491 55241400 ~ 55426308 (+)
G159417 NA non-coding upstream 119692 54354056 ~ 54354331 (+)
G159412 NA non-coding upstream 122301 54346852 ~ 54351722 (+)
G159407 NA non-coding upstream 129648 54344009 ~ 54344375 (+)
G159405 NA non-coding upstream 130075 54343670 ~ 54343948 (+)
G158946 nox5 non-coding upstream 179612 54294176 ~ 54294411 (+)
G159466 NA non-coding downstream 1870 54488779 ~ 54489407 (+)
G159507 NA non-coding downstream 43876 54530785 ~ 54530990 (+)
G159697 NA non-coding downstream 107351 54594260 ~ 54594503 (+)
G159896 NA non-coding downstream 248891 54735800 ~ 54736001 (+)
G159923 NA non-coding downstream 265258 54752167 ~ 54752497 (+)
G159415 NA other upstream 120635 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 452119 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 2649841 51816510 ~ 51824182 (+)
G155541 NA other upstream 3052901 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 3056905 51412121 ~ 51417154 (+)
G159889 LOC106562215 other downstream 241387 54728296 ~ 54728860 (+)
G160569 NA other downstream 1459234 55946143 ~ 55947245 (+)
G161687 NA other downstream 1758135 56245044 ~ 56252598 (+)
G162130 NA other downstream 2561405 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 3441241 57928150 ~ 57931991 (+)

Expression


Co-expression Network