ciao2a (fam96a)


Basic Information

Item Value
gene id ciao2a
gene name fam96a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54847592 ~ 54852144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565587.2
GGTTTATAACTTTGTTactgtgttaactagtgacgaCTTTTTGTTTGTCACAACCTACGCAGATGTCAAAGCTTAAGTCTTCTTATAAAAACCGCGTTGATGAGCCAATCCATATGCTAGTATGTTTTATTAAACGGTGAACATACTGTCTAGTTTAGCGGAGCGTGAAAACACTGATGTCAAAGTCTCTCTGAAAGCTCGAGTATATGAAAATTTCAAATAGTGTCTGGCTTTGTCTCACTTAGTTACATTGAGTCACAAAGTATTGCAGTTCATCGGATTGCCAGACAACACGAATGCACCAAGGACACAAAATATGGAAGAGAAAGCATTAGAAGTATACGATGTCATACGCACTATTCGAGACCCAGAGAAACCTAACACGTTGGAGGAATTGGATGTCGTGTCAGAAGAATGTGTTGAAGTCCAAGAGCTTGGAGAGGACGAGTATCTCATAATTATCAAGTTCTCCCCAACTGTCCCACACTGCTCTCTGGCAACACTAATCGGCCTGTGCTTACAAGTTAAACTGCAAAGATGCTTGCCGTTTAAACACAAGTTGGACATTTTCATTTCTGAGGGAACCCATTCTACTGAGGAAGATAttaacaaacagatcaacgACAAGGAGAGAGTAGCAGCTGCTATGGAGAACCCCAACCTGCGGGACATTGTGGAGCAGTGTGTTACTGAACCTGATGACTGAGCCAAGGGACTGACATCTCAGGGACTTTAGACCAAGGTATTCaataggcaccaaatggaagaaaatggactgaatGAAACAGGGGGGTACTAGCTGAAGTTGTCCATTTAGAAATGCTAGTTTTCGCTTTCCATTGTAAAACATTTTGTTACTGTGTACCCTAATGAATGCGACCCAGCCATCAACTTAAAATCGTAGCCATCGtggaatgtgttttttttttatatatatataagtgcCTGGAGGATATGTCGGAGATCGGTTCCAGATCGGGACTGTTCAAATTTCTTAAATCCTTTTGTGAATAACCACCATGGTAAAAAAGTCCAAATCAGTAACAGAATTCCAACTTCAAGTTTATTGTCATCATGAAAGAATCACTAAGGGATAAGATGAAGAGTTGCAGGAAAATGTGAGAACTTCCCAGTTAGTTTTTAGACTTCTGAGCAACGTCCCTCGAACAATCGCCACAGAATGGACAGCAGTGTATATGGCTTTGTCTTGTTTGATCTTTTTCTAACATCATGATTGAAATAGGAAATAAAACATGTTCCTAAAAAGCTGA
>TU183295
CACAACCTACGCAGATGTCAAAGCTTAAGTCTTCTTATAAAAACCGCGTTGATGAGCCAATCCATATGCTAGTATGTTTTATTAAACGGTGAACATACTGTCTAGTTTAGCGGAGCGTGAAAACACTGATGTCAAAGTCTCTCTGAAAGCTCGAGTATATGAAAATTTCAAATAGTGTCTGGCTTTGTCTCACTTAGTTACATTGAGTCACAAAGTATTGCAGTTCATCGGATTGCCAGACAACACGAATGCACCAAGGACACAAAATATGGAAGAGAAAGCATTAGAAGTATACGATGTCATACGCACTATTCGAGACCCAGAGAAACCTAACACGTTGGAGGAATTGGATGTCGTGTCAGAAGAATGTGTTGAAGTCCAAGAGCTTGGAGAGGACGAGTATCTCATAATTATCAAGTTCTCCCCAACTGTCCCACACTGCTCTCTGGCAACACTAATCGTTGGACATTTTCATTTCTGAGGGAACCCATTCTACTGAGGAAGATAttaacaaacagatcaacgACAAGGAGAGAGTAGCAGCTGCTATGGAGAACCCCAACCTGCGGGACATTGTGGAGCAGTGTGTTACTGAACCTGATGACTGAGCCAAGGGACTGACATCTCAGGGACTTTAGACCAAGGTATTCaataggcaccaaatggaagaaaatggactgaatGAAACAGGGGGGTACTAGCTGAAGTTGTCCATTTAGAAATGCTAGTTTTCGCTTTCCATTGTAAAACATTTTGTTACTGTGTACCCTAATGAATGCGACCCAGCCATCAACTTAAAATCGTAGCCATCGtggaatgtgttttttttttatatatatataagtgcCTGGAGGATATGTCGGAGATCGGTTCCAGATCGGGACTGTTCAAATTTCTTAAATCCTTTTGTGAATAACCACCATGGTAAAAAAGTCCAAATCAGTAACAGAATTCCAACTTCAAGTTTATTGTCATCATGAAAGAATCACTAAGGGATAAGATGAAGAGTTGCAGGAAAATGTGAGAACTTCCCAGTTAGTTTTTAGACTTCTGAGCAACGTCCCTCGAACAATCGCCACAGAATGGACAGCAGTGTATATGGCTTTGTCTTGTTTGATCTTTTTCTAACATCATGATTGAAATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565587.2 False 1271 mRNA 0.40 5 54847592 54852144
TU183295 True 1144 lncRNA 0.39 4 54847621 54852096

Neighbor

gene id symbol gene type direction distance location
LOC110491804 LOC106560756 coding downstream 322592 54510925 ~ 54525000 (-)
fem1b fem1b coding downstream 384755 54458665 ~ 54462837 (-)
coro2bb coro2b coding downstream 507757 54303365 ~ 54339835 (-)
nox5 nox5 coding downstream 548646 54281716 ~ 54298946 (-)
ambra1b LOC106560763 coding downstream 579198 54213602 ~ 54268394 (-)
si:ch211-284k5.2 LOC106560792 coding upstream 126773 54978917 ~ 55001034 (-)
LOC110491875 NA coding upstream 823905 55676049 ~ 55698528 (-)
mpi LOC106560745 coding upstream 975612 55827756 ~ 55840888 (-)
LOC110491905 ppip5k1 coding upstream 1083505 55935649 ~ 56006747 (-)
LOC110491965 LOC106561100 coding upstream 1215403 56067547 ~ 56084173 (-)
G159939 NA non-coding downstream 86729 54760579 ~ 54760863 (-)
G159924 NA non-coding downstream 94871 54752406 ~ 54752721 (-)
G159916 NA non-coding downstream 100022 54747259 ~ 54747570 (-)
G159895 NA non-coding downstream 115472 54731789 ~ 54732120 (-)
G159696 LOC100846954 non-coding downstream 253442 54593821 ~ 54594150 (-)
G160745 NA non-coding upstream 48989 54901133 ~ 54901449 (-)
G160787 NA non-coding upstream 115587 54967731 ~ 54976117 (-)
G161100 NA non-coding upstream 571095 55423239 ~ 55426171 (-)
G161178 NA non-coding upstream 696387 55548531 ~ 55549486 (-)
G161226 NA non-coding upstream 763230 55615374 ~ 55615717 (-)
G159890 LOC106562215 other downstream 118732 54728299 ~ 54728860 (-)
cd59 cd59-2 other downstream 876253 53969443 ~ 53971367 (-)
G159120 NA other downstream 990040 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 1735301 53032902 ~ 53112547 (-)
G161823 NA other upstream 1449211 56301355 ~ 56302095 (-)
G162657 NA other upstream 1975152 56827296 ~ 56830576 (-)
G162745 NA other upstream 2262423 57114567 ~ 57117150 (-)
G162897 NA other upstream 2388135 57240279 ~ 57241372 (-)

Expression


Co-expression Network