LOC110491832 (LOC106560753)


Basic Information

Item Value
gene id LOC110491832
gene name LOC106560753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54951901 ~ 54976149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565626.2
CGTTTTTTAATTACCGGTGACTGTATAACAGTGATCTCGGAACTGTCACATAGTCTAGGCTATCATAGGACGCACATTTGGTCTGTCATGCAATGGAGGCTCGGATTTTTACCCTTTATTTACTTACCATCGTCTGCTTGTTTCACGTGTCTCTACAGGGAGAGCACCAGCGCAGACTGTACAAGGACCTGATGCGAAACTACAACCCTCTGGAGCGTCCCGTGTTCAATGACTCCCACTCGCTCACCGTACACTTCAGCTTCAGCCTCATGCAGATCATGGATGTGGATGAGAAGAACCAGGTCCTGACGACCAACATCTGGTTACAGCTGTACTGGACTGACTACTACCTGCAGTGGAACACCACAGACTACCCTGGAGTTACCAATGTCAGGTTCCCTGACACCCAGATATGGAGGCCTGACATTCTCCTCTACAACAGCGCTGACGAGAGGTTTGACGCCACCTTCCACACCAACGTCCTAGTCAACTCCACTGGCTACTGCCAGTATCTCCCCCCAGGAATCTTCAAGAGCACATGCTACATCGACGTGCGCTGGTTTCCCTTCGATGTCCAGCGCTGTGACCTCAAGTTTGGCTCGTGGACATACGGGGGCTGGTCTTTAGACCTGCAGATGATAGAGGCGGATGTGACTGGATACATTGCTAATGGAGAGTGGGACCTTGTGGAGGTCCCCGGACGGCGGAACGAGCGTTTCTATGACTGCTGTAAAGAGCCTTACCCTGACGTGACCTTCACGGTGGTGATGCGTAGACGCACCCTCTACTACGGCCTCAACCTGCTCATCCCCTGTGTCCTCATCTCCACCCTGGCCCTGCTCGTTTTCCTGCTGCCCGCGGACTCTGGAGAGAAGATCTCACTGGGTATCACTGTGCTGCtctctctaactgtcttcatgcTCTTGGTAGCCGAGATCATGCCGGCCACCTCCGACTCTGTTCCTCTCATAGCCCAGTACTTTGCCACCACCATGGTCATCGTGGGCCTGTCCGTCATCGCCACCgtcctggtcctccagtaccaccaTCATGACCCGGATGGAGCCAAAATGCCAAAGTGGACACGCGTGGTGCTCCTGAACTGGTGCGCCTGGTTCCTGCGTATGAAGCGGCCCGGCGAGGAGCGTGTGCGTCTGGCCTGCCACAACAAGCATCCGCGCAATAGCCTCTCCAGTGTGGAGCTCAGTATGAGCCAGGGGACCCTCCAGCCCACCAATGGCAACATGCTCTACATTGGCTTCCGGGGCATGGAGGGCATGCACTACACCACCACCCCCGACTCTGGCGTCATCTGCTCCAGGCTGGTGGGGGCAGGGGATGAGGAGGTGCTGCTACCCGGGGCCGGGCTGCCCAACTTGGGCAGCATGGCAGGCGGCACCGGGGTGGGGGTGGCGAGCCCCGTGGACTCCGACATGTCCAAGATCCTGGAAGAGGTGCGCTACATCGCCAAGCGCTTCCGGGGCCAGGACGAGGACGAGTCGCTGTGCAATGAGTGGAAGTTTGCGGCGTCTGTGATTGACCGGCTGTGCCTGATGGCGTTCTCTGTGTTCACCATCCTCTGCACCATCGGCATCCTCATGTCAGCGCCAAACTTCGTGGAGGCCATCTCCAAAGACTTCTTCACCTGAGCGGGCTGTTTGTGTTGGAGGATGAGAGGGAtggggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgtttgtttgtttgtttgtttgtttgtgtgggggggggggtgtacataTATACACTCACAaaagcacacacacgtacagtctcacacacaatctcacatatacacacacacattcccacttGCACTCACATGCATTTAATGTATACTGTTTATATCCCAAACACATCTTTACCTATGACTTATATCAGCTGACTACCCCACTCTTCAGTATTTTCACATACGTTACTGTATTTAGAGTGGCTGTTATAATGGCACAACTTATAGCAATACAAATGTGTTCATCATATGTGGTGTGAATCTGTGATCAATTGAGGTCTTCATCAACAATGACTGTGTATATTAAGTAGCACTTTGGGGATGTTCCAGAAAGCAGGATCATTGAGTTAACCAGCTAGCTTACTGAAATCCATATTTTTGAGAAATATACACTTGACATTGGCATAGTATATATTAATCAACAATCAGAAACGCATATTCAAGCTGAGCTAAATTAACCAAAAAAATTCAAGAGATATATATGATTGTTAATATGTTAGCTAGATAACTTAAGGATTTATTTGATTTTATCACAGGCTATTGGAAGTATACATGGGTGAAAATGTTTGTTCCAAAAAAGATTGGTGTTTTGTAATGTTCATTCgtgtacagtacatgtaaaaaTGGAAAAAGTAGTTTCCCTTGTTTATGCCTTTCAAAGGAAGTCTCTGTAAAGTTTCATGCTGAGTTTCTCTCAATCTAAAGCTCGTTTCATAGATTTGCTCGAGTGAATTGAAGAGACTGCCCCAATTGCAAAATGTAGATCATTTCTGTTTTCTTTCCTTCTGCATTAGAAGTTCAATTCCCAAGAGAACAGCCATGCCAATAATAATTGTAACAGTGtttttggacttgtggtttttgTGCTATTTATTCTTTGTTTCACTGCTTTGTGCCACTGACCCATTTGACATGCATGGAACCTATGACATTTGACATAAGTGTTTGGACGAAAAGCGTACAATGAGGGAGTTCAGGTGCAGTGGAGTGCAGTGATCCCTAGTGTCACCCTGGAATGAAGGACAAGTTCTGCTCGAATACTTCAGGTGTGTATTCACCAGGATCCAAACGGGAAGGATCTAACTAaatgtgtccaatagaaactctttttttttttggtaaacGTTTTTCCATTTCCAAACGTTTTGCAGCAGTTTGCTACGTTGTGcagtaatgaatacacccccagGTGATAGCTCAATCTGTTTGAAAATGGTTTCATACCTTCTGAATATGACCTTGGCTTGGGTTTTCCATCGCCCTCGGTTCTCCTCAACTGTTCCTCTGTACTGTAAAAGCTGTATGGGAGCCTACCGCTCTTCCCGTCCACCTTTATCAATTAACCTTTAACCCTTAAACGTTTGTCATTTATGTGAACTTGCATCCATGCCCAGAATACATTTTGATCCATgcacaaaaataaatgtatttttctaGATGTCA

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-7-like isoform X1

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04809 CHRNA7; nicotinic acetylcholine receptor alpha-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565626.2 True 3211 mRNA 0.48 10 54951901 54976149

Neighbor

gene id symbol gene type direction distance location
spg11 spg11 coding upstream 7121 54852812 ~ 54944780 (+)
calml4b calml4 coding upstream 447305 54491725 ~ 54504596 (+)
cln6b cln6 coding upstream 464992 54474023 ~ 54486909 (+)
itga11b itga11 coding upstream 495947 54364918 ~ 54455954 (+)
dgkzb LOC106560764 coding upstream 760314 54100767 ~ 54191587 (+)
LOC118940499 NA coding downstream 24290 55000439 ~ 55024185 (+)
znf609a LOC106560750 coding downstream 265251 55241400 ~ 55426308 (+)
LOC110491849 LOC106560749 coding downstream 502398 55478547 ~ 55535685 (+)
myo9ab LOC106560748 coding downstream 616512 55592661 ~ 55819518 (+)
scamp2 scamp2 coding downstream 865296 55841445 ~ 55857300 (+)
G160045 NA non-coding upstream 10220 54941100 ~ 54941681 (+)
G159949 NA non-coding upstream 103933 54768824 ~ 54847968 (+)
G159940 NA non-coding upstream 190344 54761331 ~ 54761557 (+)
G159923 NA non-coding upstream 199404 54752167 ~ 54752497 (+)
G159896 NA non-coding upstream 215900 54735800 ~ 54736001 (+)
G160061 NA non-coding downstream 2761 54978910 ~ 54982484 (+)
G160082 NA non-coding downstream 34060 55010209 ~ 55077415 (+)
G160127 NA non-coding downstream 97380 55073529 ~ 55074103 (+)
G160184 NA non-coding downstream 209441 55185590 ~ 55205725 (+)
G159889 LOC106562215 other upstream 223041 54728296 ~ 54728860 (+)
G159415 NA other upstream 598513 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 929997 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 3127719 51816510 ~ 51824182 (+)
G155541 NA other upstream 3530779 51420847 ~ 51421122 (+)
G160569 NA other downstream 969994 55946143 ~ 55947245 (+)
G161687 NA other downstream 1268895 56245044 ~ 56252598 (+)
G162130 NA other downstream 2072165 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 2952001 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 3239528 58215677 ~ 58216383 (+)

Expression


Co-expression Network