LOC118940499


Basic Information

Item Value
gene id LOC118940499
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55000439 ~ 55024185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037089.1
CCTTGTGTCTTGATGTACTGCCTTATGTTAGTGTCGTGTTCTTGGTGTTGATGTTTTACTAAAACGTTTCACCTGCATCCGACTCACCGCCCCATCATTACACCATTGTAACCAGTGTGTGCGTCCACTGACCTGGAGTTTCTTGAGTTTCAGCTGAACATGTGCAGGTGTTCTAATGCCTTTAGTGTCCACAATGGGCCTGGCCGTACTCAGCTGGAGGTGATGGTGGCGGCATCTGGCGCCAACAGGTGCTTGGAGACCATCAGCAAGGCTTGAGAAGAAAGCTGGAGGCATATGCTGCAGACAAAGCGGGggacctcctctccccctccctctcagtgTGCTGTCCCTGTGTtgatcagcagagagagactaaTGATGGGCAGGTTATCCCCCCACGTGTGAAGACCCAGGATTCAAAGGTCATAtcctcccccacccccccaccccccaagcCACCGAACTCTGCCATACCTCTGCCGATATTGAAAACCAATCAGGGCCTTCCTTCAGGCAATTTGTCGTGGTGGTCAGAAGGGGTGGAAGGGGGAGTATAAGTGGGATAGGAATAGGAAACAGGCTGAGAGGGAAGGTGTTTGTGTGTAGGGGGGGTTTGGGTGGTGGGTGGCAGTGGGGAGTGGGATACTGATGATTCTCCATCTGTCCGACAAGGACCTTAGGGAGGCAATCTGTTATTTTTGAAAAGCCCTTGTCGATGGTGAGAAGTTATAGAGGCTCTATCCGGCCATTTACTGCTTGATGTTGTTCATTTATAAACATGAAAAGACCCCTTTCCCCGGGTAAACAGTTTGACCCTGCGGACGGCAGGTCACTGTTATTATGTGATAGAGATTTGAGAAGGTGATGTGTAGTCTACCTCACTCAGCAGTTTGGTGTCAGTGCTGGATCATGCTACGGcagggctttttttttttttttacacgaaACGTTAAAAAAAAagctgaaacagggagggacttcCTAGATTtgtcaaattaaaaaaataaaaaaataaaaaaaagttttctgTTTTAAGACATTTGCCATTGCGTTCCCTAACATGAACCAGGCATCACAGCCTTCTCAATCTAAggcagtgattcccaaacctctCCTTGAGTACACCCAGCCATTCCACTTATTTCAATGTATTCCAGTTCTAGCACACCTCGTTAAATTGATCAACTAAACACAGAGCCCTTCATTGGTTGAAATCAGGTATGCCAGCACTGGAACACATCAAATACGTGGAATGTGGGGGTACACCAGGGgaggtttgggaaacactgatctaCAGAACGACCTGTGATGATGTTTTTGACACTACTAACTAGTCACCTTTTGCATAATATTAGCTGCCTGTTGTGTGGTACACTATGCCATTGATACTGACACAGTTTTGAGGCATCGGTAGAGATTGTGATAAACAGTTCAAATTAGATGACAATGGTATGTACGTATCTCTGTAGcacaagacacacacattcacacactgaaAAGTAGAGTCATCCCTGTGGTCTGTTACCTGAGAGATCCTGGGGCGGAGGAGTCTAATAcaggtgtgatgtcattgtgctaaacacacacacacacacacacacatacagtatacacacacacacatacagtacacacacacaccatctatttTTGTGAAAGGTCTGGCAGTCATCGTCTCTCGCCGATAAAGTCTGTTATTTCCTTATGTGGCAATGTGGGTATTTATATGTAGAGAAGATATCcaccaccgagagagagaggaacagtgagagagagagaggctactgcCTCTACAGGTTTGAGGCCACAGACAACTCTGTTTCCTCCCCCcgccctctctcctttcctctatcccccgGCCTTGCTtcatccttctctcatcctcctctctctcgtagacattagctaggtttccatgaACTTTTCcagcaattttttttttgggggggacattTAGAAAGTTCACATAGAAAACAGATGTGACAATTGCCTGCTacaatgtgtttccattgaacTATCTTGTGTCGATAaaacagctggatgtaatgaagtcacacctaaaaaaaaaaaaaaagaactttCTTTCGCAAGAAAGAACAGTGTCGGCTAAAAATGAACttgaagtgtttccattaccCATTTAGGCAAAATGCTCATTAATAAATTGGCGACAGCCTATATGCCATCCCAcctttctgtttcatgtctcaggtagcccgcATAGAGACAATGCAAGAATTTACTAATATTTGCCATATTCTAATCATTCTCATGTGCCAATGTATCGCCACAGTCTGTGTCAtggtgatttattttttatttttttagggggtggatcagctttaatatcgAGAATaaattgttgcttccatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037089.1 True 2375 mRNA 0.45 3 55000439 55024185

Neighbor

gene id symbol gene type direction distance location
LOC110491832 LOC106560753 coding upstream 24290 54951901 ~ 54976149 (+)
spg11 spg11 coding upstream 55659 54852812 ~ 54944780 (+)
calml4b calml4 coding upstream 495843 54491725 ~ 54504596 (+)
cln6b cln6 coding upstream 513530 54474023 ~ 54486909 (+)
itga11b itga11 coding upstream 544485 54364918 ~ 54455954 (+)
znf609a LOC106560750 coding downstream 217215 55241400 ~ 55426308 (+)
LOC110491849 LOC106560749 coding downstream 454362 55478547 ~ 55535685 (+)
myo9ab LOC106560748 coding downstream 568476 55592661 ~ 55819518 (+)
scamp2 scamp2 coding downstream 817260 55841445 ~ 55857300 (+)
LOC110491898 map1a coding downstream 837237 55861422 ~ 55931584 (+)
G160061 NA non-coding upstream 17955 54978910 ~ 54982484 (+)
G160045 NA non-coding upstream 58758 54941100 ~ 54941681 (+)
G159949 NA non-coding upstream 152471 54768824 ~ 54847968 (+)
G159940 NA non-coding upstream 238882 54761331 ~ 54761557 (+)
G159923 NA non-coding upstream 247942 54752167 ~ 54752497 (+)
G160127 NA non-coding downstream 49344 55073529 ~ 55074103 (+)
G160184 NA non-coding downstream 161405 55185590 ~ 55205725 (+)
G160508 NA non-coding downstream 746182 55770367 ~ 55770752 (+)
G160381 NA non-coding downstream 803575 55827760 ~ 55829632 (+)
G159889 LOC106562215 other upstream 271579 54728296 ~ 54728860 (+)
G159415 NA other upstream 647051 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 978535 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 3176257 51816510 ~ 51824182 (+)
G155541 NA other upstream 3579317 51420847 ~ 51421122 (+)
G160569 NA other downstream 921958 55946143 ~ 55947245 (+)
G161687 NA other downstream 1220859 56245044 ~ 56252598 (+)
G162130 NA other downstream 2024129 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 2903965 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 3191492 58215677 ~ 58216383 (+)

Expression


Co-expression Network