LOC110491849 (LOC106560749)


Basic Information

Item Value
gene id LOC110491849
gene name LOC106560749
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55478547 ~ 55535685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565661.2
CTGCATGAGTGAGTGCACGTAGTAGATGGACCGTAGAGATCACAGTAGTAAGGCACACAAAAAATGCAGGAGGCGGGAACAGTAAATAAATAAGCCAGTGCCCAGCGCCGGTGGATGCTCAGCGCAACAAGTTCGCTTGTTAGTCAGCCCGAAATGTAATCTACTCGGTGCTCCTGCCTTTGTGTTTGACAGCTCGACAACTCTGACAACCGCTTTTCCCCTCTTCCAGTCTTGTCTACCATTTTCCCTTTACCCACGGACTTCTTCCTTTAGAGTACGATTAGGTGGACGGACATTCGACCTAATTTCTCTTCCCCGAGTCCGCCGCGGAAATGATATACTCGACAGCGTATCTACCCAGTTTCCACGGCTGAAGATGATGGAACACCAGGAGCAGAGTGATGACATCAGTGTCCTGAGCCCGCTGGAGTTGCTGGCAGAGGCCGCCAAGGAGGATGATGGACACTGCCAACCACAGTTCAGgcTGCAACTGATTGATGACCTGACCTATGAAGATGTCAAGAAATGCTACAGGGGCTCGACGGTCAGCAAGTACAATTCCCAGTACCACAAGCTGTTCCAGACCGTTCCCAAGGAGGAGATCCTCATGAAAGTGTATTCCTGTGCTCTTCTCCGAGACATCCTACTTCAGGGCCGCCTCTACATCTCCCGCAACTGGCTGTGTTTCTATGCCAACCTCTTTGGGAAGGACATCAAGGTGGCCATTCCAGTGGTGTCAGTACGGCTGGTGAAGAAACACAGGACAGCAGGCCTAGTACCTAACGGGTTGGCCATCACTGTGGACACCAGCCAGAAGTATGTGTTTGTGTCCTTGCTGTCCCGAGACAGTGTCTACGATGTCCTCAGGAGGATCTGTACACACCTTCAGGTGAATGGGAAGAAAAGCCTTAGCCTGAAGCAGTACTTGGAGGAGCCTAGCTCACTATCTATGGATGAGTTCCCTGTGGTCAATGACTTCCCTCCTGTGTTGAAGTGGAGGAGAAAGCCGTCCATTCCGTCcgtgtcctcctctctcccagacctcCTGGGGAACTCCACCAGCAGCCTGAGCGCAGTGGACACCCCCTACCTACCCACTGAGGTTCCACTGACATTGAAGAGTAAGATCAAAGAGCGGAGTCTGGAGACGGAGAAGATCCTCCTGGCAGAGCCAGTACCAGAGCTGGGCCACATGGAGTACCAGCTGCTCAAGTTCTTCATCCTTCTTATCATTCTGCTCATCGTGTCCTCCTGCTACCTGGCCTTCCGTGTGTGTAGTCTGGAGCAGCAGCTGTCCTTCCTCAATACACACCCGACAGTGCacatgagagagagGTAACACTTGCTGTATGCTGCGTCCCCATTGGACAGATGTCCTGTCAGTCACGGAGGTTCTCCTGATGATTGGGCAAACAGAGACTCGGTTCATTTACCTGTCCCACCATGTAGGTGTGGAGGAGTGCCCTGCTGGTTCAATGAGAAGACAATGACTTGAGAAAAGCCAAGATCCGAAGCAAAAACTGCACTTAAACAGACAGCCTAGTAGGGGGTGCCAGTGAGTCAATAATCCTCTTGTCATTCCCTAGAAAGACTATGGACCCCTCGGGACAAGAGACTAGGATGGAATGAGGAGAATGGAGGAAAATTGGAAGTAGAGGACTAGAGAGTAAATGTCAATAGGGCTGTGCCAACCAAGTTCACCTGACCTTTGACCTCAATGTCCTTATTTTACTGCCAAGGAATTACAATTACAATTCCAGTCGACTGATCAGACACCTTCTTCGCATTCAGGATTTCAGAGACTagagtatttttttttcttccagagACTTTTTCAACAGGAACAGACTGAACCCAAGTGGGTGTTTTTTGTGTACACTTTTGTGGAGAGTTGCTGCCAGAGAGACTGAAGACAAGGTATTCCCTTCCGTTAAGGAACTCAACCTGACCTGGTCAAACAGTTCCCACCGCAACCCACCCGGCAATGTTTACTGAGCACCGTCACTAAGGCACGAACTCTCCTGTACCCTAATGAAGAAACTATTTCAATAGACATTATTATCAGAACTTTATCTGCCTGTCAGAATTGTGAGATGATATGCTAGAGTTACGGCTGAACTATAGCGGTCTTGTCATGCAAACTGAAAACATGGTACCGTGTGTGTCGGGTGAGGTCGACAAGTCGTGAGGTGAAAGGATGCGAGCgtgtgtgcgtgtcagtgtgGGTGCGTGTTTACGTGTGTATGAGTGTTTTCAAACATTATGTGTGCAACTTAAACAAGTGACTGGGAATATCTCAAGGTAGCGTGCAGCTTCTCCACCTGACAAACGATGCCTGCATGTAATGTAACACTAGATATTGACCGAATTGTAAAGCCATTGTCTGTGACACTGTTGCATGGATGTTATCGACGGAGTGGAACTAACGCAGAGTAAAGCAGTGACGGTATCGAGAGAGACGCAGGTTGACAGAGAATGTCGTTGCTGTTCACTTGTTCTGTAGCGTTCCACGTGGAGGTGTGTACTATAGAGATTGTACAGTACTTGAAACCTAATCATTGCATTTCATAGGAGATTATGTATTCATGTCATCCATGGTGTGGAAAAATATGGCCTCCACTTCAGCTACTAGGTGCACCTTTTTAAAGCGTATCTGAGGCTGGTTCAGAGAGAATTGTGTAGACTAGAGTGTATTTACTACTAGAGcctgtatgtatttatttgtgtGCAATTTTGTACTGAGTCAGAAAGGCATGTTGTTTTTAGTGAGTCGGTATGGGTGTTTGTTCACTGACGTATTTCTAACATGGGTCGTGTTCATTTTgcacaaaagggggggggggggggactgatttTAAATTAACTACTTGGATTTGTCCAAtcgtgccctaatgaatacgaccctgtcTTGCAGTAGGGCTGGAGTCAGCAGTGCCGTGCGTAACTGTGAGACAGCAGTGACTAATAAACAGCCTTCCTTGCCTGTG
>XM_021565670.2
AGGAGGTTTAGAAGCATTCTGGCTCTGATTTGGGGTCAGTAGCAGCACTACACAATAtaactgtttgtgtttgtttagTTGTAAAACCGCCGCCCCTTGAATGTCTTTTGGACCCCTAAAGTTACTACTTACTCGTTAGAACTCCCAAAGAGCAGCCATGATCTATCGTTCAGGCTGAAGATGATGGAACACCAGGAGCAGAGTGATGACATCAGTGTCCTGAGCCCGCTGGAGTTGCTGGCAGAGGCCGCCAAGGAGGATGATGGACACTGCCAACCACAGTTCAGgcTGCAACTGATTGATGACCTGACCTATGAAGATGTCAAGAAATGCTACAGGGGCTCGACGGTCAGCAAGTACAATTCCCAGTACCACAAGCTGTTCCAGACCGTTCCCAAGGAGGAGATCCTCATGAAAGTGTATTCCTGTGCTCTTCTCCGAGACATCCTACTTCAGGGCCGCCTCTACATCTCCCGCAACTGGCTGTGTTTCTATGCCAACCTCTTTGGGAAGGACATCAAGGTGGCCATTCCAGTGGTGTCAGTACGGCTGGTGAAGAAACACAGGACAGCAGGCCTAGTACCTAACGGGTTGGCCATCACTGTGGACACCAGCCAGAAGTATGTGTTTGTGTCCTTGCTGTCCCGAGACAGTGTCTACGATGTCCTCAGGAGGATCTGTACACACCTTCAGGTGAATGGGAAGAAAAGCCTTAGCCTGAAGCAGTACTTGGAGGAGCCTAGCTCACTATCTATGGATGAGTTCCCTGTGGTCAATGACTTCCCTCCTGTGTTGAAGTGGAGGAGAAAGCCGTCCATTCCGTCcgtgtcctcctctctcccagacctcCTGGGGAACTCCACCAGCAGCCTGAGCGCAGTGGACACCCCCTACCTACCCACTGAGGTTCCACTGACATTGAAGAGTAAGATCAAAGAGCGGAGTCTGGAGACGGAGAAGATCCTCCTGGCAGAGCCAGTACCAGAGCTGGGCCACATGGAGTACCAGCTGCTCAAGTTCTTCATCCTTCTTATCATTCTGCTCATCGTGTCCTCCTGCTACCTGGCCTTCCGTGTGTGTAGTCTGGAGCAGCAGCTGTCCTTCCTCAATACACACCCGACAGTGCacatgagagagagGTAACACTTGCTGTATGCTGCGTCCCCATTGGACAGATGTCCTGTCAGTCACGGAGGTTCTCCTGATGATTGGGCAAACAGAGACTCGGTTCATTTACCTGTCCCACCATGTAGGTGTGGAGGAGTGCCCTGCTGGTTCAATGAGAAGACAATGACTTGAGAAAAGCCAAGATCCGAAGCAAAAACTGCACTTAAACAGACAGCCTAGTAGGGGGTGCCAGTGAGTCAATAATCCTCTTGTCATTCCCTAGAAAGACTATGGACCCCTCGGGACAAGAGACTAGGATGGAATGAGGAGAATGGAGGAAAATTGGAAGTAGAGGACTAGAGAGTAAATGTCAATAGGGCTGTGCCAACCAAGTTCACCTGACCTTTGACCTCAATGTCCTTATTTTACTGCCAAGGAATTACAATTACAATTCCAGTCGACTGATCAGACACCTTCTTCGCATTCAGGATTTCAGAGACTagagtatttttttttcttccagagACTTTTTCAACAGGAACAGACTGAACCCAAGTGGGTGTTTTTTGTGTACACTTTTGTGGAGAGTTGCTGCCAGAGAGACTGAAGACAAGGTATTCCCTTCCGTTAAGGAACTCAACCTGACCTGGTCAAACAGTTCCCACCGCAACCCACCCGGCAATGTTTACTGAGCACCGTCACTAAGGCACGAACTCTCCTGTACCCTAATGAAGAAACTATTTCAATAGACATTATTATCAGAACTTTATCTGCCTGTCAGAATTGTGAGATGATATGCTAGAGTTACGGCTGAACTATAGCGGTCTTGTCATGCAAACTGAAAACATGGTACCGTGTGTGTCGGGTGAGGTCGACAAGTCGTGAGGTGAAAGGATGCGAGCgtgtgtgcgtgtcagtgtgGGTGCGTGTTTACGTGTGTATGAGTGTTTTCAAACATTATGTGTGCAACTTAAACAAGTGACTGGGAATATCTCAAGGTAGCGTGCAGCTTCTCCACCTGACAAACGATGCCTGCATGTAATGTAACACTAGATATTGACCGAATTGTAAAGCCATTGTCTGTGACACTGTTGCATGGATGTTATCGACGGAGTGGAACTAACGCAGAGTAAAGCAGTGACGGTATCGAGAGAGACGCAGGTTGACAGAGAATGTCGTTGCTGTTCACTTGTTCTGTAGCGTTCCACGTGGAGGTGTGTACTATAGAGATTGTACAGTACTTGAAACCTAATCATTGCATTTCATAGGAGATTATGTATTCATGTCATCCATGGTGTGGAAAAATATGGCCTCCACTTCAGCTACTAGGTGCACCTTTTTAAAGCGTATCTGAGGCTGGTTCAGAGAGAATTGTGTAGACTAGAGTGTATTTACTACTAGAGcctgtatgtatttatttgtgtGCAATTTTGTACTGAGTCAGAAAGGCATGTTGTTTTTAGTGAGTCGGTATGGGTGTTTGTTCACTGACGTATTTCTAACATGGGTCGTGTTCATTTTgcacaaaagggggggggggggggactgatttTAAATTAACTACTTGGATTTGTCCAAtcgtgccctaatgaatacgaccctgtcTTGCAGTAGGGCTGGAGTCAGCAGTGCCGTGCGTAACTGTGAGACAGCAGTGACTAATAAACAGCCTTCCTTGCCTGTG

Function

NR:

description
PREDICTED: GRAM domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565661.2 False 2987 mRNA 0.48 12 55478547 55535685
XM_021565670.2 True 2791 mRNA 0.48 12 55480626 55535685

Neighbor

gene id symbol gene type direction distance location
znf609a LOC106560750 coding upstream 52239 55241400 ~ 55426308 (+)
LOC118940499 NA coding upstream 454362 55000439 ~ 55024185 (+)
LOC110491832 LOC106560753 coding upstream 502398 54951901 ~ 54976149 (+)
spg11 spg11 coding upstream 533767 54852812 ~ 54944780 (+)
calml4b calml4 coding upstream 973951 54491725 ~ 54504596 (+)
myo9ab LOC106560748 coding downstream 56976 55592661 ~ 55819518 (+)
scamp2 scamp2 coding downstream 305760 55841445 ~ 55857300 (+)
LOC110491898 map1a coding downstream 325737 55861422 ~ 55931584 (+)
acanb LOC106561101 coding downstream 496805 56032490 ~ 56056380 (+)
LOC110491996 LOC106561096 coding downstream 610776 56146461 ~ 56170964 (+)
G160184 NA non-coding upstream 272822 55185590 ~ 55205725 (+)
G160082 NA non-coding upstream 401132 55010209 ~ 55077415 (+)
G160127 NA non-coding upstream 404444 55073529 ~ 55074103 (+)
G160061 NA non-coding upstream 496063 54978910 ~ 54982484 (+)
G160508 NA non-coding downstream 234682 55770367 ~ 55770752 (+)
G160381 NA non-coding downstream 292075 55827760 ~ 55829632 (+)
G160589 NA non-coding downstream 397442 55933127 ~ 55933810 (+)
G160619 NA non-coding downstream 464698 56000383 ~ 56001041 (+)
G160635 NA non-coding downstream 483657 56019342 ~ 56019605 (+)
G159889 LOC106562215 other upstream 749687 54728296 ~ 54728860 (+)
G159415 NA other upstream 1125159 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 1456643 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 3654365 51816510 ~ 51824182 (+)
G155541 NA other upstream 4057425 51420847 ~ 51421122 (+)
G160569 NA other downstream 410458 55946143 ~ 55947245 (+)
G161687 NA other downstream 709359 56245044 ~ 56252598 (+)
G162130 NA other downstream 1512629 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 2392465 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 2679992 58215677 ~ 58216383 (+)

Expression


Co-expression Network