XLOC_020650 (fbxo42)


Basic Information

Item Value
gene id XLOC_020650
gene name fbxo42
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 191931 ~ 193234 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040848
caggtgGGCCAGTGTGTGGTGGTGTTCTCCCAGGCTCCATCTGGTCGGGCCCCTCTGAGCCCCAGTCTGAACTCTCGGCCGTCCCCCATCAGCTCCACCCCTGCTCCTCTGGGCCCTGACCCACCATCCCTGCGGTCCCAGTCTCCGGTGCGCAGCGGGGCGGCGGGGGCAGTGCTGGGGGCAGTGGAGGAGGCCCCGTGTGTGAACGGGCGCTGGGGAACTCTGCGGCCCCGAGCGTCAGCACGAGCGTCCTCGTCCTCATCTCCCTCACGGGGCCCTGATAGCCCTCCTCTCCTCAACGGGGCCTCGCCGTCCCCGCGCACCAGCCCTGTGCAGCAGGCCTCGCCTCCCGCCCGGCCCCCGGGCCCTGCAGATCTCAGCTGGGACGGCTCTCCGCCGAGTGCCAATGGTCTGCACACACCACCGGGTTCCCCGCGGACGCCCCCAGGAGCCGTGTCTCCAGCAGCGCTGCGCAGGGGTTTGGAAGCCGTCAAAGCCTCATCCTCTCTGCCGTCCCCGCCGCCCGCACCGCAACCAGGCCCCTCAGCCCCCAGCGGGACCCCTCCAGCCCCTGCCAGCCCCCCACCCATCGCCCGCCGCCTCGGGCACCACCCGCCGCAGAGCCTGAACGTGGGCAAGCCGCTGTACCAGGCGCTGAGCTGTAAGCCCATGCAGATGTACCTGCTGGACGTGTCGCGGGCGCGGACGCAGGGTGTGGTGGCGTGGCGGGTGTACGGCAGCGGCGGAGCTCCCAGCGCCGTCACCGGGCCCCCCGAGACCAGCCTGCACACCGTGGTCCAGGGCCGCGGGGAGCTCATCATCTTCGGCGGACTCATGGACAAAAAGCAGAACGTCAAATACTACCCCAAAACcaacactagcatgtgtgtgtgtgtgcgagtgcgagtgcgagtgtga

Function

symbol description
fbxo42 Orthologous to human FBXO42 (F-box protein 42).

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-7399 Orthologous to human FBXO42 (F-box protein 42).

Ensembl:

ensembl_id ENSDARG00000087545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040848 True 918 mRNA 0.70 2 191931 193234

Neighbor

gene id symbol gene type direction distance location
XLOC_020649 slc25a34 coding downstream 3819 184670 ~ 188112 (-)
XLOC_020648 fblim1 coding downstream 26987 158112 ~ 164944 (-)
XLOC_020647 si:ch1073-335m2.2 coding downstream 36304 130967 ~ 155627 (-)
XLOC_020646 NA coding downstream 90484 101082 ~ 101447 (-)
XLOC_020645 ndufaf3 coding downstream 97412 85597 ~ 94519 (-)
XLOC_020651 ora1 coding upstream 15410 208644 ~ 209741 (-)
XLOC_020652 zgc:66156 coding upstream 32703 225937 ~ 237651 (-)
XLOC_020653 zgc:66156 coding upstream 61156 254390 ~ 263117 (-)
XLOC_020654 myhz1.1 coding upstream 75118 268352 ~ 278328 (-)
XLOC_020655 CABZ01079178.1 coding upstream 85556 278790 ~ 282498 (-)
XLOC_020641 NA non-coding downstream 155815 27146 ~ 36116 (-)
XLOC_020657 NA non-coding upstream 120476 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 199385 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 466683 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 506979 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 540010 733244 ~ 735244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00676085_00686938 FBXO42 coding CI01000186 null 675557 ~ 687650 (+)