LOC110491875


Basic Information

Item Value
gene id LOC110491875
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55676049 ~ 55698528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468918.2
CAGGGAAGTGAGGTATGTTGAAAGCTTGTGGAGCAGAGCTTTGTAAACAAGAAGGGAGTAATGAAGTGATCTACATTCTGATACAGGATGCAGTAcatcagtagaacacACTGGACTCTCCTCCGCCAATCATagaaggagaatggtctaattcctcccatcaaaaagagagctggcccaagcaagcaCAGGTTACACCTAAAGCATGAGGAGCGTGACCTTCATCAACGACTACGCAGAGGATAATGCAATAGTATTATCAGGACGCCACCTAGGACAAAAACACTTGGTGGAAAGCTGCTGATGCCATGTGACAAAAGCAGCTCTACAAGAAATCAATGACAAACCTTGcttcgatgctctggagcctggtgtcGTCATCACCAAGCGTTCAGACTCAgtcgggaccaggtttcagctgctgcgcaacgctgacatcatagatggtctgcctgtaGAAGCACCgcctggactggacacagcttGACAAACGTATATTTTTGAGAAGATCGGGGAGTTTTGCGACgaagaggctatggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtggttcggaaggaccagtcatcagcactatctgcagtgcctctattcacATGACTCTCTCCATATGTTGctttttatttattatatattttatttacccctgattgtatgcatatCTGCCTCATCTATCatttgtttcatgagctgaaataaaaagatcacagaaatgttcaatACGCAC
>TU183963
GAGCTTTGTAAACAAGAAGGGAGTAATGAAGTGATCTACATTCTGATACAGGATGCAGTAcatcagtagaacacACTGGACTCTCCTCCGCCAATCATagaaggagaatggtctaattcctcccatcaaaaagagagctggcccaagcaagcaCAGGTTACACCTAAAGCATGAGGAGCGTGACCTTCATCAACGACTACGCAGAGGATAATGCAATAGTATTATCAGGACGCCACCTAGGACAAAAACACTTGGTGGAAAGCTGCTGATGCCATGTGACAAAAGCAGCTCTACAAGAAATCAATGACAAACCTTGcttcgatgctctggagcctggtgtcGTCATCACCAAGCGTTCAGACTCAgtcgggaccaggtttcagctgctgcgcaacgctgacatcatagatggtctgcctgtaGAAGCACCgcctggactggacacagcttGACAAACGTATATTTTTGAGAAGATCGGGGAGTTTTGCGACgaagaggctatggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtggttcggaaggaccagtcatcagcactatctgcagtgcctct

Function

NR:

description
hypothetical protein cypCar_00043689, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468918.2 False 795 mRNA 0.45 3 55676049 55698528
TU183963 True 623 lncRNA 0.48 3 55676186 55698493

Neighbor

gene id symbol gene type direction distance location
si:ch211-284k5.2 LOC106560792 coding downstream 675015 54978917 ~ 55001034 (-)
ciao2a fam96a coding downstream 823905 54847592 ~ 54852144 (-)
LOC110491804 LOC106560756 coding downstream 1151049 54510925 ~ 54525000 (-)
fem1b fem1b coding downstream 1213212 54458665 ~ 54462837 (-)
coro2bb coro2b coding downstream 1336214 54303365 ~ 54339835 (-)
mpi LOC106560745 coding upstream 129228 55827756 ~ 55840888 (-)
LOC110491905 ppip5k1 coding upstream 237121 55935649 ~ 56006747 (-)
LOC110491965 LOC106561100 coding upstream 369019 56067547 ~ 56084173 (-)
LOC110491985 LOC106561098 coding upstream 392684 56091212 ~ 56136350 (-)
LOC110492010 LOC106561097 coding upstream 473017 56171545 ~ 56177565 (-)
G161226 NA non-coding downstream 60332 55615374 ~ 55615717 (-)
G161178 NA non-coding downstream 126563 55548531 ~ 55549486 (-)
G161100 NA non-coding downstream 249878 55423239 ~ 55426171 (-)
G160787 NA non-coding downstream 699932 54967731 ~ 54976117 (-)
G160745 NA non-coding downstream 774600 54901133 ~ 54901449 (-)
G161396 LOC106593556 non-coding upstream 117364 55815892 ~ 55819433 (-)
G161371 NA non-coding upstream 133604 55832132 ~ 55857297 (-)
G161411 NA non-coding upstream 159828 55858356 ~ 55858644 (-)
G161412 NA non-coding upstream 160370 55858898 ~ 55859175 (-)
G159890 LOC106562215 other downstream 947189 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 1407696 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 1704710 53969443 ~ 53971367 (-)
G159120 NA other downstream 1818497 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 2563758 53032902 ~ 53112547 (-)
G161823 NA other upstream 602827 56301355 ~ 56302095 (-)
G162657 NA other upstream 1128768 56827296 ~ 56830576 (-)
G162745 NA other upstream 1416039 57114567 ~ 57117150 (-)
G162897 NA other upstream 1541751 57240279 ~ 57241372 (-)

Expression


Co-expression Network