LOC110491985 (LOC106561098)


Basic Information

Item Value
gene id LOC110491985
gene name LOC106561098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56091212 ~ 56136350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565899.2
CtcactctgacaccgcctatctTTCAATCTCACCAACCAACGCAGCAGCACCACACGGAGCAGCTGTGTTTTTGTCCCAAGAGttcaaagagagagtgaaagaagccACAATGAAGACCCAAATTCGTTTCGCGTTCTCCATACCACTCTTTGTAGTTTGTTTTCTGGTTGGTGCCCTTTCCACAGTGAATGgtGACTACTGTGAGGTTAACGTCTGCGGTAACGGAGGGATCTGTGTGACCGGGGCCGGAGCCCCCTTCATCTGTATCTGCCCCGACGGATACACCGGGGACACCTGCAACGACACAGAGGCTGGGCCCTGCAACCCCAACCCCTGCAAGAACGATGCCATCTGTGAGGTGACTGGCCAGTCACGCCGAGGGGACGTCTTCAGCGAGTACATCTGCACGTGCCAAGATGGCTTTGACGGAGTCCACTGCCAGAACAATGTGAATGACTGTGTCGGCCAGCCGTGCAAGAATGGTGGCTCCTGCAGGGACCTAAATGGAGACTTCAACTGCCGCTGTCCGTCCCCCTACGTGGGCAAGCACTGCCAACTGCggTGTATCTCTCTGTTGGGCATGGAGGGCGGAGGCATTGCAGAGTCTCAGATCTCGGCCTCGTCGGTGCACTACGGCATCCTGGGCCTGCAGCGCTGGGGGCCCGAGCTGGCCCGTCTCCACAATAAAGGCCTGGTAAACGCCTGGACCTCTGCCTCCCATGATAGGAACCCCTGGATAGAGATTAACATGCAGAGGAAGATGCGTTTCACGGGCATTGTGACGCAGGGCGCCAGCCGCATGGGGTCAGCAGAGTTCATCAAGGCCTTCAAAGTGGCGTCGAGTCTGGATGGGAGGACCTACACCGTGTACCGCCTGGATGGGCAGAAGAAGGACAATGTGTTTGTGGGGAACGTGGACAACGACAGCACCAAGACCAACCTGTTTGACCCTCCCATCATTGGCCAGTACTTCCGCATCATCCCTGTGGTCTGTCGCAAGGCCTGCACCCTGCGCATGGAACTGGTGGGCTGTGAGCTCaatgTGTATTCAAACACGGCAGGTTGCTCTGAGCCCATGGGCATGAAGTCGCGCCTGCTCTCCGACCGCCAGATCTCGGCCTCAAGTGTCCACCGCACCTGGGGAATTGAGGCGTTCACCTGGCAGTCCTACTACGCCCGGCTGGACAAGCAGGGCAAGACTAACGCCTGGACAGCGGCCACCACCAACCGCTCCGAGTGGTTGCAGGTGGACCTGGAGTCCCCCAAGAGGATCACAGGCATCATTACCCAGGGGGCCAAGGACTTTGGAGCAGTCCAGTTTGTTTCTGCCTTCAAGGTGGCCTACAGCGACGACGGCCAGTCCTGGAGCATAGTCAAGGACGACGTCACCAGCACAGACAAGATCTTCCCGGGTAACAGCGACAACAACGTCCACAAAAATAATGTGTTCGAGCCTCCCTTCTATGCCCGATTGGTCCGCATCCTGCCGTGGGCGTGGCACGAGCGCATCACCTTGCGAATGGAGTTGTTGGGCTGCGATGAGTAGCCCCGTCCCCGGCCAAATCCCCTCCACTTTCCCTGCCCTTCCTCATCTTTCTCCTCCTTTCCAAAACCTCCTGAGCCACGCCTGCACTGCCTTGCTCACACCCGTAGAGGGCAGCAAAACACCAcgaccaccaccacaaccctgGAGAAGGTACAAAATTGACCCTAACCACTGATCTAGGGTCGGATAATGGTTACCACTGATCTAGCCCACCTAATGGTTACGGGTAAGATTAGGTaggggtaatctgatcctaggtCGGGTGCTGAAGGTCAACTTGTACGTCGAGCGCACAGACTACTGCTGTGTCAGCCGGAACTACATGGACTCTGAACCTGTCCTTCCTAGATCAGGGCCTTATTCAGAGttttagagtaggagtgctgatctaggatctggttCCCcctattattaattattattatttagaggcaaaactgatcttagatcagcactgctactgtgagacgctttatgaatctGGGCACAGAAGACTGAACCCGAGACCCATCGCTAGTGATGTACAATACAGTAGTAGCTAACTTGGCTGTGATGTTTTTCCAACTGGGAATTTTCACCTGACCATCCTGAGACACTGAAGTGCGTAGTAGTATTATCGAACACCCTCGTGTAGTCTTATCGCCTAGCCGTTTCCTTGATTCTGCAGTGCTCTGGAAGAGATGTTTTTGCGGGAgttcttgtttgtgttttatttCGTTGGGCTTCTTAACCAGGGAAAGACCCGTCGTGTGACTATAGGATTTATAAGATTGATTTGTATTTTTTGAAAAAGAAAAGGTATACCAAATGAATTTCACTTTGTTGACAAATTGATGGTGTTCGTTGACTAGTTGTGAATGCATTATGATTTATTAGCCATGTTTTTACTAAATGCAGTTTTCAAATAAGTAGCAGACCTAAGAAAAAAAATAGAAAGCATGTATAAAAAGCTGGAGAGAGACTCTTATTCTGTAATCTTGTGACATTGAGTGATATTCAAATCCCCAAATAGTTCAATGCAATCTTAGTTTATAATTCTTTGCTAAAGGGTATGTAAAAGTGCAGTAATACTCCTACAGTATGTGGTGTTGTTCTATAACTCAATCTGCTCTGATTGTGATGTCTGTCCTTTCATTAATGCACTGTGAGTTGTGACGTCAATGTAATGCATTTATTACTAATTGACTAATATTATGAAGTGACATAGAAAATAGGGGGTTAGCAAGTTGATGATGCTGCCAGATGTTTTTTTGAGATTAAGGCAGATCAATTCTAGCCTGATCCCAGAGATGTGCTGTCTTGACAAACACGATCATAGGCGTTGGCTAGACGGCACagcagatctggaaccaggcatATTTTCATATTATATGTGCTACTAATGTTGTTATAACCCTTATGATACACAGCTCAACTTAATATGATTTTGTTTTCCCCCTTTTTAAAAGGCACTTTCAGGGTCAAATCTGTAtaattgttttctgaggtaaATATGTGGAAACTCAAAGTTTTCTCCATTAAAGAAATAAAGTACTGATGTTGACAGACATATACAAGTAACTGccgaaataaaggaaacacttgagtaaatgagggatacaaatgatattgaaagcaggtgcttgcacacaggtgtggttcctgagttaattaagcaatgaaCATCCCAGCATGCTTAGGATCGTGTATAAAACTGCCCCATTGCTTAATAATGCCAATTATGTTGCCTACCATGGccagaagaagagatctcagtgactttgaaagaggggtctcaaaggagcatagggtgtttaaagggtgtgtgtctcagtcaccagatctcaacccaatttaacacctatgggagattctggagtggcgcctgagacagcgttttccaccatcaACCAAACACCAAATGACGGAATTTCTCGTGGAGGAATGGTATCACATCCCTTCAATTTGCTCCATTTATTCATTTTATTCGAGtttcagacacttgtagaatctatgccaaggcacattgaagctgttctggtggctcgtagaggcccaacgccctattaagacactttatgttggtgtttcctttattttgacactTCCCTGAAGATTGAGTGTTTGAGAACAAAGCGTTTTAATACTATGAATCTGTCATGTCACTGCATAGGAGAGCAGTTATATGGCTTCCATAAGTTATCAAGGGGCAGTTTTAGATTTTTGACATGATAGCAACCAAAAAAAGACATTTCTGCCAGTTAGTTTTTTTCTGAGCTGGTTATCCTACCTAATGTAAATACTTTTTGTAAAAATGTGTTCCTTGAAGTTGTAATATGTAAATGTTTTGCAGCAGACCAATCAAATGCCATCCATTTATCACAAGAGGACCAAATTGATGCGTAGAATTCGAAGCCTGTGGCCACACTGATAAGATGGAAAAGAAAAATCTAATTTAAAAAACGATTTCTATGGTTGCACTGAACGTAAGACGTGACATGGCAATCTGCATATTGCTCCTAGGTCATAGCTAGCATTGTCAAGCTCCCCCCATGAATTATGAATTACGGGTGTGTGCAATAAGAAGATTAGTTTTTGATTTGAATGAATATTAATATGAACAGCTGGAAAACATCGGCGATAGATATCCTCTTTTAAATGCATGTGAATAACGATGCATTTGCAAGGCTATGGAAAGGATTGTGGTGTCAGACTAATATATTTATAATCTTTGTAGACTGTTCCAAAATAGTTATTATCTGATGTCTGCATGCATTGTATTGACTATACTTTTTTATTTGATCCAACATAGACATTTTGATTATATTGTTTTCTCTGTACATTTTTCTGATTCGTTCATCAGACTCTAGTTATTCCCATTCTTTCATTTTCCACAATGTCCTGGTTTTATATGattcataaaaaataataatacaattgaTGTGTTTTTATGCGATATTATTAATATTGATCAGTTCTTGTTTTCTGTGTTTCTTAAAAGAATTCCCTTAACTCTCAAGACATAAACAATAAAGGATTTAACATCA
>XM_021565907.2
CtcactctgacaccgcctatctTTCAATCTCACCAACCAACGCAGCAGCACCACACGGAGCAGCTGTGTTTTTGTCCCAAGAGttcaaagagagagtgaaagaagccACAATGAAGACCCAAATTCGTTTCGCGTTCTCCATACCACTCTTTGTAGTTTGTTTTCTGGTTGGTGCCCTTTCCACAGTGAATGgtGACTACTGTGAGGTTAACGTCTGCGGTAACGGAGGGATCTGTGTGACCGGGGCCGGAGCCCCCTTCATCTGTATCTGCCCCGACGGATACACCGGGGACACCTGCAACGACACAGAGGCTGGGCCCTGCAACCCCAACCCCTGCAAGAACGATGCCATCTGTGAGGTGACTGGCCAGTCACGCCGAGGGGACGTCTTCAGCGAGTACATCTGCACGTGCCAAGATGGCTTTGACGGAGTCCACTGCCAGAACAATGTGAATGACTGTGTCGGCCAGCCGTGCAAGAATGGTGGCTCCTGCAGGGACCTAAATGGAGACTTCAACTGCCGCTGTCCGTCCCCCTACGTGGGCAAGCACTGCCAACTGCggTGTATCTCTCTGTTGGGCATGGAGGGCGGAGGCATTGCAGAGTCTCAGATCTCGGCCTCGTCGGTGCACTACGGCATCCTGGGCCTGCAGCGCTGGGGGCCCGAGCTGGCCCGTCTCCACAATAAAGGCCTGGTAAACGCCTGGACCTCTGCCTCCCATGATAGGAACCCCTGGATAGAGATTAACATGCAGAGGAAGATGCGTTTCACGGGCATTGTGACGCAGGGCGCCAGCCGCATGGGGTCAGCAGAGTTCATCAAGGCCTTCAAAGTGGCGTCGAGTCTGGATGGGAGGACCTACACCGTGTACCGCCTGGATGGGCAGAAGAAGGACAATGTGTTTGTGGGGAACGTGGACAACGACAGCACCAAGACCAACCTGTTTGACCCTCCCATCATTGGCCAGTACTTCCGCATCATCCCTGTGGTCTGTCGCAAGGCCTGCACCCTGCGCATGGAACTGGTGGGCTGTGAGCTCaatgGTTGCTCTGAGCCCATGGGCATGAAGTCGCGCCTGCTCTCCGACCGCCAGATCTCGGCCTCAAGTGTCCACCGCACCTGGGGAATTGAGGCGTTCACCTGGCAGTCCTACTACGCCCGGCTGGACAAGCAGGGCAAGACTAACGCCTGGACAGCGGCCACCACCAACCGCTCCGAGTGGTTGCAGGTGGACCTGGAGTCCCCCAAGAGGATCACAGGCATCATTACCCAGGGGGCCAAGGACTTTGGAGCAGTCCAGTTTGTTTCTGCCTTCAAGGTGGCCTACAGCGACGACGGCCAGTCCTGGAGCATAGTCAAGGACGACGTCACCAGCACAGACAAGATCTTCCCGGGTAACAGCGACAACAACGTCCACAAAAATAATGTGTTCGAGCCTCCCTTCTATGCCCGATTGGTCCGCATCCTGCCGTGGGCGTGGCACGAGCGCATCACCTTGCGAATGGAGTTGTTGGGCTGCGATGAGTAGCCCCGTCCCCGGCCAAATCCCCTCCACTTTCCCTGCCCTTCCTCATCTTTCTCCTCCTTTCCAAAACCTCCTGAGCCACGCCTGCACTGCCTTGCTCACACCCGTAGAGGGCAGCAAAACACCAcgaccaccaccacaaccctgGAGAAGGTACAAAATTGACCCTAACCACTGATCTAGGGTCGGATAATGGTTACCACTGATCTAGCCCACCTAATGGTTACGGGTAAGATTAGGTaggggtaatctgatcctaggtCGGGTGCTGAAGGTCAACTTGTACGTCGAGCGCACAGACTACTGCTGTGTCAGCCGGAACTACATGGACTCTGAACCTGTCCTTCCTAGATCAGGGCCTTATTCAGAGttttagagtaggagtgctgatctaggatctggttCCCcctattattaattattattatttagaggcaaaactgatcttagatcagcactgctactgtgagacgctttatgaatctGGGCACAGAAGACTGAACCCGAGACCCATCGCTAGTGATGTACAATACAGTAGTAGCTAACTTGGCTGTGATGTTTTTCCAACTGGGAATTTTCACCTGACCATCCTGAGACACTGAAGTGCGTAGTAGTATTATCGAACACCCTCGTGTAGTCTTATCGCCTAGCCGTTTCCTTGATTCTGCAGTGCTCTGGAAGAGATGTTTTTGCGGGAgttcttgtttgtgttttatttCGTTGGGCTTCTTAACCAGGGAAAGACCCGTCGTGTGACTATAGGATTTATAAGATTGATTTGTATTTTTTGAAAAAGAAAAGGTATACCAAATGAATTTCACTTTGTTGACAAATTGATGGTGTTCGTTGACTAGTTGTGAATGCATTATGATTTATTAGCCATGTTTTTACTAAATGCAGTTTTCAAATAAGTAGCAGACCTAAGAAAAAAAATAGAAAGCATGTATAAAAAGCTGGAGAGAGACTCTTATTCTGTAATCTTGTGACATTGAGTGATATTCAAATCCCCAAATAGTTCAATGCAATCTTAGTTTATAATTCTTTGCTAAAGGGTATGTAAAAGTGCAGTAATACTCCTACAGTATGTGGTGTTGTTCTATAACTCAATCTGCTCTGATTGTGATGTCTGTCCTTTCATTAATGCACTGTGAGTTGTGACGTCAATGTAATGCATTTATTACTAATTGACTAATATTATGAAGTGACATAGAAAATAGGGGGTTAGCAAGTTGATGATGCTGCCAGATGTTTTTTTGAGATTAAGGCAGATCAATTCTAGCCTGATCCCAGAGATGTGCTGTCTTGACAAACACGATCATAGGCGTTGGCTAGACGGCACagcagatctggaaccaggcatATTTTCATATTATATGTGCTACTAATGTTGTTATAACCCTTATGATACACAGCTCAACTTAATATGATTTTGTTTTCCCCCTTTTTAAAAGGCACTTTCAGGGTCAAATCTGTAtaattgttttctgaggtaaATATGTGGAAACTCAAAGTTTTCTCCATTAAAGAAATAAAGTACTGATGTTGACAGACATATACAAGTAACTGccgaaataaaggaaacacttgagtaaatgagggatacaaatgatattgaaagcaggtgcttgcacacaggtgtggttcctgagttaattaagcaatgaaCATCCCAGCATGCTTAGGATCGTGTATAAAACTGCCCCATTGCTTAATAATGCCAATTATGTTGCCTACCATGGccagaagaagagatctcagtgactttgaaagaggggtctcaaaggagcatagggtgtttaaagggtgtgtgtctcagtcaccagatctcaacccaatttaacacctatgggagattctggagtggcgcctgagacagcgttttccaccatcaACCAAACACCAAATGACGGAATTTCTCGTGGAGGAATGGTATCACATCCCTTCAATTTGCTCCATTTATTCATTTTATTCGAGtttcagacacttgtagaatctatgccaaggcacattgaagctgttctggtggctcgtagaggcccaacgccctattaagacactttatgttggtgtttcctttattttgacactTCCCTGAAGATTGAGTGTTTGAGAACAAAGCGTTTTAATACTATGAATCTGTCATGTCACTGCATAGGAGAGCAGTTATATGGCTTCCATAAGTTATCAAGGGGCAGTTTTAGATTTTTGACATGATAGCAACCAAAAAAAGACATTTCTGCCAGTTAGTTTTTTTCTGAGCTGGTTATCCTACCTAATGTAAATACTTTTTGTAAAAATGTGTTCCTTGAAGTTGTAATATGTAAATGTTTTGCAGCAGACCAATCAAATGCCATCCATTTATCACAAGAGGACCAAATTGATGCGTAGAATTCGAAGCCTGTGGCCACACTGATAAGATGGAAAAGAAAAATCTAATTTAAAAAACGATTTCTATGGTTGCACTGAACGTAAGACGTGACATGGCAATCTGCATATTGCTCCTAGGTCATAGCTAGCATTGTCAAGCTCCCCCCATGAATTATGAATTACGGGTGTGTGCAATAAGAAGATTAGTTTTTGATTTGAATGAATATTAATATGAACAGCTGGAAAACATCGGCGATAGATATCCTCTTTTAAATGCATGTGAATAACGATGCATTTGCAAGGCTATGGAAAGGATTGTGGTGTCAGACTAATATATTTATAATCTTTGTAGACTGTTCCAAAATAGTTATTATCTGATGTCTGCATGCATTGTATTGACTATACTTTTTTATTTGATCCAACATAGACATTTTGATTATATTGTTTTCTCTGTACATTTTTCTGATTCGTTCATCAGACTCTAGTTATTCCCATTCTTTCATTTTCCACAATGTCCTGGTTTTATATGattcataaaaaataataatacaattgaTGTGTTTTTATGCGATATTATTAATATTGATCAGTTCTTGTTTTCTGTGTTTCTTAAAAGAATTCCCTTAACTCTCAAGACATAAACAATAAAGGATTTAACATCA

Function

NR:

description
lactadherin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565899.2 False 4573 mRNA 0.45 10 56091212 56136350
XM_021565907.2 True 4555 mRNA 0.45 10 56091212 56136350

Neighbor

gene id symbol gene type direction distance location
LOC110491965 LOC106561100 coding downstream 7039 56067547 ~ 56084173 (-)
LOC110491905 ppip5k1 coding downstream 84465 55935649 ~ 56006747 (-)
mpi LOC106560745 coding downstream 250324 55827756 ~ 55840888 (-)
LOC110491875 NA coding downstream 392684 55676049 ~ 55698528 (-)
si:ch211-284k5.2 LOC106560792 coding downstream 1090178 54978917 ~ 55001034 (-)
LOC110492010 LOC106561097 coding upstream 35195 56171545 ~ 56177565 (-)
LOC110492018 i20l1 coding upstream 57328 56193678 ~ 56197521 (-)
pdia3 pdia3 coding upstream 62535 56198885 ~ 56207633 (-)
LOC110492055 LOC106561094 coding upstream 103730 56240080 ~ 56258432 (-)
LOC110492077 LOC106561093 coding upstream 170823 56307173 ~ 56309253 (-)
G161600 NA non-coding downstream 485 56090245 ~ 56090727 (-)
G161545 NA non-coding downstream 30118 56054756 ~ 56061094 (-)
G161486 NA non-coding downstream 67042 56023969 ~ 56024170 (-)
G161484 NA non-coding downstream 73370 56017463 ~ 56017842 (-)
G161806 NA non-coding upstream 136823 56273173 ~ 56273381 (-)
G161810 NA non-coding upstream 142759 56279109 ~ 56279411 (-)
G161816 NA non-coding upstream 155616 56291966 ~ 56292481 (-)
G161818 NA non-coding upstream 158745 56295095 ~ 56295463 (-)
G161841 NA non-coding upstream 177128 56313478 ~ 56313924 (-)
G159890 LOC106562215 other downstream 1362352 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 1822859 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2119873 53969443 ~ 53971367 (-)
G159120 NA other downstream 2233660 53856686 ~ 53857552 (-)
G161823 NA other upstream 165005 56301355 ~ 56302095 (-)
G162657 NA other upstream 690946 56827296 ~ 56830576 (-)
G162745 NA other upstream 978217 57114567 ~ 57117150 (-)
G162897 NA other upstream 1103929 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 1108031 57244381 ~ 57250155 (-)

Expression


Co-expression Network