LOC110492077 (LOC106561093)


Basic Information

Item Value
gene id LOC110492077
gene name LOC106561093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56307173 ~ 56309253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566081.2
GGGTAACTGCTATGAAAGCTGGAACGATGACTGAGAAGGAGCGATTTGATTTTGGCACAGAGAGATATCGAGGTTTTCCACTAGATaatacagccacaaagtcaaaatgtgTTCTATCGTAAAAATTAttgaaaacaaacattttctttttggtcttcatttaaggttaaagttaggcataaggttaacaTAGTggataaggtaagggttaaggttaggtttaaaaatcagattttaagaagagaaattgtagaaataggcaggtTTATGGCATTGcggctgtgttaactagtgacgaCTGAGCCCGAGAGGGAAGGGGGTGGAGTAGTAAAGTTGAGTGGGTAGTGAGACGACGCTATAAAAGCCGGTGCCGGAGCTGTCTGTGTCAGTAACACTCGCTGACTGAGGCAGATACAGCGACatagagaaacaacaacaacaagaaggaGGAACAGCTTACAGCACGAGTGGACATATGTAGCAACCTCTGCTCGCACCGGCTCTGCAGTACTGACAAGGACTCAAAGATTAGAGAATTGGAAAAAAGAGGCTGACATCTGATACAGCAGCTCTTTGGTACAAACACAGAGTTTCATCATCCAGGACTTTGGGAGATTTTGGTATGGTTAAGAGAACTTTGCTTCGCCGTCTTTCCTGAGAAAGAGCATCTGACAATAGAGGaggcaccagagagagagagagagggagagagggagaactgtGGGACAATAGCATACGAAGGAGCAAAACAACTGCTTTTTCCACCTGCTTTCACACCCAGTGTTCCACACATGGCTGCTGTCCGTCAGATGCCCATGGAGACCCAGGGCTTCCACCACATGCTACCTGCCCATATTCTCTCCTCGACCATGGAGGAGTTCCCCCAGCAGCTCCCCGTCCCCAAGGGGCACGCCCGTGGCAAGAGCCGCCCCCGCCGGGCCCGCGAGGCCCGCTTCAAGACCCAGCCCGTCACCTTCGCCGAGATCAccgaggtggaggaggagggcgcCTCGCCCCTGGAAGAGGAGAGGGCACGCCGGTCTTTCCTGCAGTCCCTGGAGAACCTTCGCCGGAGCACGCAGGCGCTCTACTGTCCGACGACTGGTCGACGCACGCCCACGGCCACGGCCACACAGCAAAGCCTGGACTCTAGTGACTCTGACTCTGCCCATTGACGGGCAGGACCTGAGGAGAAGTGGAGAAGTGTACGCACCCTGCCTGGCACTGGCACAAGCCCCTTTGCCCTTCCAATTCTGCTTCACACAGGAGCCCAATGAActaaactgaactgaactgatATCCAAGCTGCTCCTGTGCATATAGGCCATTCTCCTTGAAAATATATGTTTCCACATACACATATATTAGCATACCAATATATGTGGCTACGGTATGCATTTGACACATTTTTGTAAAGAACGCTACCCTGTAATATATATCACTGGCTGGTTATATTGCTAACGCCTCTTAGAGAAGCTAGGTGTAGAATACAAGCTATGATGCAGTGTTGAATACACCACTTCAGAGATATTCTTCTTCAGATATATTCCTCTTCTACTGGCGAGGACTTCAGGCCAGGAGGGGCTTTGGAACTTGAAatgggttaaatgtggaatgtCTTTGTTCTTTCTTTTATATAAAAGGATGGAAAcaatgttgtttttctatgttgtactTGTTTTGTATTCTGCTTCAAACAGATTCTCCAAGTGCAGTCGTGATTGAAAGAGACAGCTCATTCAGATTTGACTGACTGAACTCTGTGTATGGAAAGATACTCAATGCTAACTGAAGTTAGCAGTTACTTTGCAATGTTTTGGCACTGCTCTTATTTCTATGTTAAGCTCCACAGCTAGCGAATGccactcacaaaaaaaaaatgccttTCCACAGATGTGAAAATATTTATTCTCTTATTTTGTTTGTAACAGCAAATCTACAAATATTATTTTGTCGTTGACTCGTTTGATTTCTAAAGTCACACTTGATTTCTAAGAtgaatatctttttttttttttttacattgttttacaTCCATATTTGTTAGTTTGCTTCAAGTGTAATAAATATTTGCAACGATA

Function

NR:

description
uncharacterized protein C11orf96 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566081.2 True 2081 mRNA 0.45 1 56307173 56309253

Neighbor

gene id symbol gene type direction distance location
LOC110492055 LOC106561094 coding downstream 48741 56240080 ~ 56258432 (-)
pdia3 pdia3 coding downstream 99540 56198885 ~ 56207633 (-)
LOC110492018 i20l1 coding downstream 109652 56193678 ~ 56197521 (-)
LOC110492010 LOC106561097 coding downstream 129608 56171545 ~ 56177565 (-)
LOC110491985 LOC106561098 coding downstream 170823 56091212 ~ 56136350 (-)
alkbh3 alkbh3 coding upstream 32654 56341907 ~ 56362608 (-)
hsd17b12a hsd17b12 coding upstream 65688 56374941 ~ 56401083 (-)
LOC110492101 NA coding upstream 93880 56402425 ~ 56434238 (-)
LOC110492111 api5 coding upstream 145321 56454574 ~ 56469193 (-)
LOC110492118 LOC106561086 coding upstream 160312 56469565 ~ 56482577 (-)
G161818 NA non-coding downstream 11710 56295095 ~ 56295463 (-)
G161816 NA non-coding downstream 14692 56291966 ~ 56292481 (-)
G161810 NA non-coding downstream 27762 56279109 ~ 56279411 (-)
G161806 NA non-coding downstream 33792 56273173 ~ 56273381 (-)
G161600 NA non-coding downstream 216446 56090245 ~ 56090727 (-)
G161841 NA non-coding upstream 4225 56313478 ~ 56313924 (-)
G161847 NA non-coding upstream 9671 56318924 ~ 56319129 (-)
G161859 NA non-coding upstream 22913 56332166 ~ 56332380 (-)
G161863 NA non-coding upstream 25665 56334918 ~ 56335175 (-)
G162411 NA non-coding upstream 81136 56390389 ~ 56390611 (-)
G161823 NA other downstream 5078 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 363608 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 1578313 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2038820 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2335834 53969443 ~ 53971367 (-)
G162657 NA other upstream 518043 56827296 ~ 56830576 (-)
G162745 NA other upstream 805314 57114567 ~ 57117150 (-)
G162897 NA other upstream 931026 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 935128 57244381 ~ 57250155 (-)
c2h11orf16 cssa10h11orf16 other upstream 1023825 57332151 ~ 57340310 (-)

Expression


Co-expression Network