alkbh3 (alkbh3)


Basic Information

Item Value
gene id alkbh3
gene name alkbh3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56341907 ~ 56362608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951019.1
CATAACTAAATAGGAACCCTTAAATTTGGTTGAAGTTTCAGGGGGATTTTTTTTCGAGTAACACAGGATAGAGCTGTCAAATTTGATATGTGGATAGCTAGCTTTTAAATTGTTCTAATCCTGTTGTTTCAGACCTCCAATCGGTGTCCTCATCTCGATGTGATGTCGGATAAACGTCAGCGTGCAAGGGTCCAGGGCTCTTGGGCCAAACCACTGCCCAAACAACCACGTCCAACAGGAGCAATTCCCAATTCCAGCACTGTTGTGATACCAAGTGCCAATCCACCACCTGCTGGTTGGGGAGTGGGACAGCGGATGTTTGAGTATCAACAGCCCGctaagCCAGTCAGAGATGTCCCTACGGAGAAGGTGATGGAAATGGGGGGTGATTATGAGATCAGCCATGGTCCATCAGGAGTGTCAAGactgagGCTGATCCATGGGTTCCTACCACCAGAAGAGGCTGACTGGGCCTTCAGTAAACTGCTAGCAGAGCTGCCTTGGTCTCAAAAGACTAACTACAGACAAGGTGAGGCCTACGAGGAGCCCAGGTTAACCTGCTGGTATGGGGAACTCCCTTACACGTACGCCCACTCTACTCTGGAGGCCAACGCACAGtggcaCCCGCTGCTGGTCACCCTGCGCTGCGCCGTAGAGAAGGCGAGTGGCCACCGTTTCAACTCGCTGATGTGTAACCTGTATAGGAACTGCAAAGACAGCATCGGCTGGCACAGTGACGACGAGGCCGCGCTGGGCACCCGGCCCACCATCGCCTCCCTCAGCCTGGGAGACATGAGGGTGTTCAGCCTCCGCAAGCAGCCTGCACCGGAGGAGGACGGGGATTACACTTATGTGGAGAGGCTGCGGATCCCTCTAACTCACGGCACTCTCCTGATGATGGAAGGAGCCACTCAGGATGACTGGCAGCATTCAGTGGCCAAAGAGTACCACGACCGAGGGCCTCGCATCAACCTGACCTTCCGCACCATGTACCCAGAGCATGAGGGGCCGAGACCAAGAGCCAGACTACCACCCCAACACTAAACACACTGTCCTTCACAAACACCTTCACACTCTGGGTGGGACTGCTATAAAGAGTAGAAATGGGAGATTGTGTGGAGGGGGAGGACATGACCTCGGCCCTTGATGGACATCGTTAAATACACTTTATGGGATAGTGAGGAAGACGAGTGTTGACATCAGGAGAAAATACAAGCTTAAAACCACCTGACAAGATTTGTAAGGAGTTGTCAACGTTTACAGTTATGCTCACTAAATATGTGGAGAGCAATGTTATTGTTTCATTGCATCACACGGTAGATTTTGCCTTAAATATATATCCCAGAACGGATTAGTTTGACACCTATAGTTTCTGTGGACTGGAATCACAGGGGTCAAGTTCTCTGAAGGCCTTATGaagttaaaaatatatgtttgagtaatttgtgcacatttatttatttgagaAGACTAATCAGGAAAAGGAAAAGATGGATGAGTTTTGGCTTTCTACCTGGTTGCCTTTTATTTCATATTTCTTTGGGGTCACGTTTTGCTTTTGTTTAATTAGGTATTCTATTTACAATTACAAGTCATAATTTAATACCCCTTGGTTTGTAGCCTTTCGAGAGAATATCCCAGCTATATAAAATGTGAAAGCACAACTACAGTGGCCAAGTTGACTAAATTATAGCCCCGTTTTATTTTGTAACGCTAAAGGATGAAGTTGTTGTGTTGAATGTTTGGTAAATTAAAAACGGAGCGAGAGAAtcata

Function

symbol description
alkbh3 Predicted to enable dioxygenase activity. Predicted to act upstream of or within DNA dealkylation involved in DNA repair and oxidative single-stranded DNA demethylation. Predicted to be active in nucleus. Orthologous to human ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG:

id description
K10860 ALKBH3, DEPC1; mRNA N1-methyladenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951019.1 True 1775 mRNA 0.47 10 56341907 56362608

Neighbor

gene id symbol gene type direction distance location
LOC110492077 LOC106561093 coding downstream 32654 56307173 ~ 56309253 (-)
LOC110492055 LOC106561094 coding downstream 83475 56240080 ~ 56258432 (-)
pdia3 pdia3 coding downstream 134274 56198885 ~ 56207633 (-)
LOC110492018 i20l1 coding downstream 144386 56193678 ~ 56197521 (-)
LOC110492010 LOC106561097 coding downstream 164342 56171545 ~ 56177565 (-)
hsd17b12a hsd17b12 coding upstream 12333 56374941 ~ 56401083 (-)
LOC110492101 NA coding upstream 40525 56402425 ~ 56434238 (-)
LOC110492111 api5 coding upstream 91966 56454574 ~ 56469193 (-)
LOC110492118 LOC106561086 coding upstream 106957 56469565 ~ 56482577 (-)
si:dkey-42p14.3 LOC105006113 coding upstream 116833 56479441 ~ 56484470 (-)
G161863 NA non-coding downstream 6732 56334918 ~ 56335175 (-)
G161859 NA non-coding downstream 9527 56332166 ~ 56332380 (-)
G161847 NA non-coding downstream 22778 56318924 ~ 56319129 (-)
G161841 NA non-coding downstream 27983 56313478 ~ 56313924 (-)
G161818 NA non-coding downstream 46444 56295095 ~ 56295463 (-)
G162411 NA non-coding upstream 27781 56390389 ~ 56390611 (-)
G162414 NA non-coding upstream 43884 56406492 ~ 56456516 (-)
G162435 NA non-coding upstream 73830 56436438 ~ 56439222 (-)
G162446 NA non-coding upstream 93031 56455639 ~ 56456064 (-)
G161823 NA other downstream 39812 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 398342 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 1613047 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2073554 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2370568 53969443 ~ 53971367 (-)
G162657 NA other upstream 464688 56827296 ~ 56830576 (-)
G162745 NA other upstream 751959 57114567 ~ 57117150 (-)
G162897 NA other upstream 877671 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 881773 57244381 ~ 57250155 (-)
c2h11orf16 cssa10h11orf16 other upstream 970470 57332151 ~ 57340310 (-)

Expression


Co-expression Network