hsd17b12a (hsd17b12)


Basic Information

Item Value
gene id hsd17b12a
gene name hsd17b12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56374941 ~ 56401083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566111.2
GCTATAGAGTAGGTGGTGGGTGTGTGTTTAAATCAGGATAGACTAGTGTTGTGGGAGTGTGATGCTACAACCTCCTTATAAAGGGATTCGCACGTTGTGCCTTGAAATTAGAGCACATTGCCTAAATTTGAGGTCTCCACAGAAAAACAGCTGTCATGTATTCGTTGAACGTGGAGGACATGCTTCCTGTGGCCGAGACGCCACTCTTCTGGGTCGGAGCATTCACCGTGGCCTCACTGTCTTTGTGGGTGCTCCACCGACTCCTCCAAGGTTTTCGGATTTGGGTCTGGGGAAATGGCCAGTTGCTCTCGCCGAAACTGGGCAAATGGGCAGttgtGACGGGAGCCACAGACGGCATCGGTAAAGTCTATGCGGAGGAGCTCGCTCGTAAAGGGTTCGCCATGATTCTCATCAGTCGCTCCCAGGACAAGCTGGATGATGTCGCCAGGCAGCTTGAGACGCAGTACAAGGTGGAGACCAAGACAATCGCCGTGGACTTTGGCCTATCGGACATCTACCCCAAGATCGAGGCTGGACTGGCTGGACTGGAGATCGGAGTCCTGGTGAATAATGTGGGGATATCCTATCCCTACCCTGAGTACTTCCTGCATATTCCTGACCTGGACAATTTCATCACCAACATGATCAATGTCAACATGACCTCCGTTTGCCAGATGACTCGTCTAGTTCTACCCAGAATGGTGGAGAGGTCCAAAGGTGTGGTCCTCAACATCTCCTCTGCCAGTGGCATGTACCCTGTCCCTCTTCTGACTGTGTACTCCTCTTCCAAGGCTTTTGTGGACTTCTTCTCCCGGGGACTTCAGGAGGAGTATAAGGCAAAGGGAATCATTGTCCAGAGCGTGCTGCCCTTCTTTGTGGCGACCAAGATGACCCGTATCAGGAAGCCCACCTTGGACAAGCCCACCCCGGAGCGCTATGTGGCTGCTGAGCTGACAACCATCGGACTGCAGGACCAGACCAACGGCTACTTCCCCCACGCAGTCATGGGCTGGTTGACCACTGTCCTGGTGCCCATTAACCTGGTCATTTACTTTGGGGCAAGGATGAACCGAGCCCAGCGTACTGGCTACCTGAAGAGGAGAAAGCTGAGGGAGCTGGCCAACCAGAGTAACGGGAAGAGTGACAGGCTGAAGAGCGaataagaacccccccccccccccccccatataacAGAACGGAAGCTGACCATAGAACTACCATACAACCACTCTGACTAGCCCTGACTCTGTCCATTAGTTAGTAATGTCGAATGATTCACGGGTGTGTTTTTGAGGATCTTTTTGTATGTTGACGCTAACGGATTTCTTCCTTGGAGCCCATATTGCCGCCACATGACACGTCCTTTTGAATGAAGTGGTTCAGCGACAACGTCTCTAACCAAAACGGCAGCTCTAACAGTGGCTGCGACAAAAATACATACTCTGCTCTCAGCACAGGGAATAGTTATTTTTCTATGTGACAAAAAATGATTGTAGAGAAGAACCTTGAAAGGCCAAGTGCagtcaaatgtgttttttttgtgggtTTTTTTCTTGTTTTATATTCGTTTCCACACTGAggatggaataatactgtgaaattgtgttaatgaaaatgcccttttagtgtaaatgctgtttgaaaagaccgcctgaactTCAGCATCATTTGGTGGTATGGAGTTGTGGTCTTCTATGTCACcatgcagtaaattagttaatagaccaataagaaagcaTCCCAAACCTTTCTGCCAATAACCGCTAATTTTCAGTCCCTTCCTCGCTCTGactactcccagacagtcctagcaaaatccTTGCTTGAGCAATTGCCCTATACTATTTTTggttatttttgaccattttttaATTAACAATCACAATTTACTTGTTACCCAAAACATATTTGATATTGAGAAACATCTTCATTGGACCTTTAAACAGGGTGATTTTCGTTGACTCTGCTGTTGTAAGCAGAATGGTGGCGGGCcaaatttagtttttttttatatatatatatttttatacatgTACGTAAAACCAAGCCGCAGGCACATCTTCAGGTACTTCGCACAGTGAAGTGCAGTTTACGCATTGGCTGTGCCTGAAGTTTACAAGCGATCACTCTATTTACGTTTtttgtgtatttaaaaaaaaaaaaaaaaaatggggatTTGTTGCACTGATCTATTTCTCTTTTTTCCAGTTGTCTGAACtttaagtttttttttcttctgtttttcTCAATGTCATTCTTATCCACATGCCTTCCAGCTCATGCTGGCATTGATCACGTCCAATGAGAGGGAGTCTTGCACATTGAAGGCTTTATATGGAGCTGTGAATGCGCTAAATGATAGTAGTTCTATTGCAAGCTAATGCTATACAATTGCCGTACAGGCTCAGACTACTGCCAAAGATTGTATACTATATATTGTGCACAATAGCCTTTGCAGTGGTGAGGGACTTCAACAACATGCACaactgttttctgtttgtctaggTGGTGTTCTATGTTTGACTTGGATCTCTGTATGACTTGTTCTGACCAATGTCCAGACTTTAACCATGGTGCCTTATGAAGATTTCTCAGGTGTGAAACTAGACCAGTTTATCAGGAATTTTGGAATTGCAATGTACTGTTACTCTTGCTGCTTTGCACCTGTACGAGTTAATCTGAACTTTCTACTTGAGAAATTCTGTACAATAAAGAATGCGGTCTGTTTTATTTCCTCTCTGACTTGCTTTCTGAATATTAATGAACAAGAACtatgctgtttaaaaaaaattaaataaagagAATTCAATGTCA

Function

symbol description
hsd17b12 Enables long-chain-3-hydroxyacyl-CoA dehydrogenase activity and long-chain-fatty-acyl-CoA reductase activity. Predicted to be involved in long-chain fatty-acyl-CoA biosynthetic process. Predicted to act upstream of or within extracellular matrix organization and positive regulation of cell-substrate adhesion. Part of fatty acid elongase complex.

NR:

description
very-long-chain 3-oxoacyl-CoA reductase-A-like

GO: NA

KEGG:

id description
K10251 HSD17B12, KAR, IFA38; 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566111.2 True 2814 mRNA 0.45 11 56374941 56401083

Neighbor

gene id symbol gene type direction distance location
alkbh3 alkbh3 coding downstream 12333 56341907 ~ 56362608 (-)
LOC110492077 LOC106561093 coding downstream 65688 56307173 ~ 56309253 (-)
LOC110492055 LOC106561094 coding downstream 116509 56240080 ~ 56258432 (-)
pdia3 pdia3 coding downstream 167308 56198885 ~ 56207633 (-)
LOC110492018 i20l1 coding downstream 177420 56193678 ~ 56197521 (-)
LOC110492101 NA coding upstream 2050 56402425 ~ 56434238 (-)
LOC110492111 api5 coding upstream 53491 56454574 ~ 56469193 (-)
LOC110492118 LOC106561086 coding upstream 68482 56469565 ~ 56482577 (-)
si:dkey-42p14.3 LOC105006113 coding upstream 78358 56479441 ~ 56484470 (-)
c2h12orf73 NA coding upstream 83473 56484556 ~ 56486660 (-)
G161863 NA non-coding downstream 39766 56334918 ~ 56335175 (-)
G161859 NA non-coding downstream 42561 56332166 ~ 56332380 (-)
G161847 NA non-coding downstream 55812 56318924 ~ 56319129 (-)
G161841 NA non-coding downstream 61017 56313478 ~ 56313924 (-)
G161818 NA non-coding downstream 79478 56295095 ~ 56295463 (-)
G162414 NA non-coding upstream 5409 56406492 ~ 56456516 (-)
G162435 NA non-coding upstream 35355 56436438 ~ 56439222 (-)
G162446 NA non-coding upstream 54556 56455639 ~ 56456064 (-)
G161823 NA other downstream 72846 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 431376 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 1646081 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2106588 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2403602 53969443 ~ 53971367 (-)
G162657 NA other upstream 426213 56827296 ~ 56830576 (-)
G162745 NA other upstream 713484 57114567 ~ 57117150 (-)
G162897 NA other upstream 839196 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 843298 57244381 ~ 57250155 (-)
c2h11orf16 cssa10h11orf16 other upstream 931995 57332151 ~ 57340310 (-)

Expression


Co-expression Network