LOC110492101


Basic Information

Item Value
gene id LOC110492101
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56402425 ~ 56434238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468952.2
TGAGGTGGGAGGATCCAGATATAGCTCGTGAACCCGACCTCCTACTCGGTACAGTAACTTGTCCAGTTCCAAGGGGGGAGTAGGTATACCGGGCCTCCTGTGGTATTTCTCTCTCCAAAACAATGATGGGGTCTAAAAACACTGACTAAATAACCTCAAGGGTGAGGGAAGAAGTAGGCACGACCGTGAAGGGCTCGAGCGCCATGTGACATCCTGGCCAGAAACGTCAACTCGATTGGGATTTCATCATCTCCATTGAGAAAGGGAGCCGGCCTATCACCCGTGGACCACTAAAATCACCACCTCTTGGTCCTTCCTCTCTCGTGTTCAGCGCAAGATGTTCGTGGTGGGATCTGAGAGCAATGTGAACAACTACAGGTGCAACCCGTACAGATGGACGTAACGTATGAAATGTGCTGAATATATCCATGTATTTAGATCCTAATATGTACACATGGAATTGCTGTATTAATTTGATGCTTTTAGAACGTCTCTTCATAAAATCTCAAATGCTGAAAGA
>XR_002468953.2
AGCGAGAAGGCTTCGAAGAGCTGAGCGAGAGCACGGCGCAGTCAAATAtcgataataataatatatgaaaagaaagagtgagagggataTTAGTGGAGTAAAGTACTGTGCTTTGAGATACGGGGAGGGGGCTCTTGTGCAGAGTTGGAGAGGCAAAATAATGTACATTACATGCACTACACGTAACGTCCCTGAGCGATGCCTTTCAAGTGGTCCCTGCTACGGTGAGGGAAGAAGTAGGCACGACCGTGAAGGGCTCGAGCGCCATGTGACATCCTGGCCAGAAACGTCAACTCGATTGGGATTTCATCATCTCCATTGAGAAAGGGAGCCGGCCTATCACCCGTGGACCACTAAAATCACCACCTCTTGGTCCTTCCTCTCTCGTGTTCAGCGCAAGATGTTCGTGGTGGGATCTGAGAGCAATGTGAACAACTACAGGTGCAACCCGTACAGATGGACGTAACGTATGAAATGTGCTGAATATATCCATGTATTTAGATCCTAATATGTACACATGGAATTGCTGTATTAATTTGATGCTTTTAGAACGTCTCTTCATAAAATCTCAAATGCTGAAAGA
>XR_002468951.2
CCTATGAGGATGATTAAAATTACCCCATTTTTTGGCGGGCTTCTTTCATCAGTTGGTTTTCGCGCTTAACTCGGTGTTCCCGTCCGCGCTCTGTTCCTGAATAAGAACAACACCAGATATGTTCGCCCCAGATAGATAACTGAAACGACGCGCACGGCTTGACCCCCTTTCGCCGTCCTGCTTTGGGCTCCGACCTAGAACTCTTTCCCTTTCTTTGTCTCAAAAAGTATCTCATTCAGACGAAGCCCTTTTGCAGACTACTCGAGCACAAACAGACAATACTTCTCACACAGGGCTTTGTACCATAACTTTGGTGTCAATTGTGTGAGGAGTAGGGGTGGGAGACTGTATTCTTACAGCTGTCTCAGCAAGTGGTCCCTGCTACGGTGAGGGAAGAAGTAGGCACGACCGTGAAGGGCTCGAGCGCCATGTGACATCCTGGCCAGAAACGTCAACTCGATTGGGATTTCATCATCTCCATTGAGAAAGGGAGCCGGCCTATCACCCGTGGACCACTAAAATCACCACCTCTTGGTCCTTCCTCTCTCGTGTTCAGCGCAAGATGTTCGTGGTGGGATCTGAGAGCAATGTGAACAACTACAGGTGCAACCCGTACAGATGGACGTAACGTATGAAATGTGCTGAATATATCCATGTATTTAGATCCTAATATGTACACATGGAATTGCTGTATTAATTTGATGCTTTTAGAACGTCTCTTCATAAAATCTCAAATGCTGAAAGA
>TU185208
GGAGGATCCAGATATAGCTCGTGAACCCGACCTCCTACTCGGTACAGTAACTTGTCCAGTTCCAAGGGGGGAGTAGGTATACCGGGCCTCCTGTGGTATTTCTCTCTCCAAAACAATGATGGGGTCTAAAAACACTGACTAAATAACCTCAAGGGTGAGGGAAGAAGTAGGCACGACCGTGAAGGGCTCGAGCGCCATGTGACATCCTGGCCAGAAACGTCAACTCGATTGGGATTTCATCATCTCCATTGAGAAAGGGAGCCGGCCTATCACCCGTGGACCACTAAAATCACCACCTCTTGGTCCTTCCTCTCTCGTGTTCAGCGCAAGATGTTCGTGGTGGGATCTGAGAGCAATGTGAACAACTACAGGTGCAACCCGTACAGATGGACGTAACGTATGAAATGTGCTGAATATATCCATGTATTTAGATCCTAATATGTACACATGGAATTGCTGTATTAATTTGATGCTTTTAGAACGTCTCTTCATAAAATCTCAAATGCTGAAAGATCCTGTCAAAATACATGCTTGGTGTGTTTATTTGGCTCTTTGCTGTCTTTCATTTATAGATGAATTCTGAAGGACCTTTATAAGATAACACTGTAGTTGGCCACGTTAAATTACATCCTATTCATACGCCTGGTCATCTAAGCAGGATGAAAAGAATAGGCTACGTTTTAATGAACTACCAATTTTGGATTAATAGCCTGTCATGTTAAGAGATATGcatgtaaaaaatatatgtttggtGATATGTCAGATAGGCTACAAAAGGGATTTCGTTGTAAACTGCTGAAAAGCCAGTTCACCCAATCCCATCGGCCCAATCCCATCGGCTCCACAAGCCTCCGGGTATATTCACTTCTGTAAAAGAATGCAAATGACGACATGACGATTTCTACAAGTCAATTGATTTTTCCAACAAGCACATTTTGATGAGTACACTACACCTGTCAGTTATACTCAGGCAGTTCTGGTTGGTCCATACTTTATGTTTAGTTACATTACGGTGTACGCATACAGCTAGTATGgcgatagtgtgtgtgtgtgtgggcgggggGGTCTTGAAGACAAAAGCAGCCTAGGCTACACTGTTGTGAGACTTTCCGTCTGGATTACAAGCTAATGCATTTAACATAAAAAATGGCCAACTCTCCCGAGTCGTGACATCCCTCCAAGGAGACGCATATTCTCTCAACAATCCTGTTCGAGTCGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468952.2 False 520 mRNA 0.47 3 56403133 56427305
XR_002468953.2 False 583 mRNA 0.46 4 56403133 56430672
XR_002468951.2 False 745 mRNA 0.47 5 56403133 56434238
TU185208 True 1221 lncRNA 0.43 3 56402425 56427298

Neighbor

gene id symbol gene type direction distance location
hsd17b12a hsd17b12 coding downstream 2050 56374941 ~ 56401083 (-)
alkbh3 alkbh3 coding downstream 40525 56341907 ~ 56362608 (-)
LOC110492077 LOC106561093 coding downstream 93880 56307173 ~ 56309253 (-)
LOC110492055 LOC106561094 coding downstream 144701 56240080 ~ 56258432 (-)
pdia3 pdia3 coding downstream 195500 56198885 ~ 56207633 (-)
LOC110492111 api5 coding upstream 20336 56454574 ~ 56469193 (-)
LOC110492118 LOC106561086 coding upstream 35327 56469565 ~ 56482577 (-)
si:dkey-42p14.3 LOC105006113 coding upstream 45203 56479441 ~ 56484470 (-)
c2h12orf73 NA coding upstream 50318 56484556 ~ 56486660 (-)
LOC110492158 LOC106561083 coding upstream 93416 56527654 ~ 56541534 (-)
G162411 NA non-coding downstream 12522 56390389 ~ 56390611 (-)
G161863 NA non-coding downstream 67958 56334918 ~ 56335175 (-)
G161859 NA non-coding downstream 70753 56332166 ~ 56332380 (-)
G161847 NA non-coding downstream 84004 56318924 ~ 56319129 (-)
G161841 NA non-coding downstream 89209 56313478 ~ 56313924 (-)
G162435 NA non-coding upstream 2200 56436438 ~ 56439222 (-)
G162446 NA non-coding upstream 21401 56455639 ~ 56456064 (-)
G162560 NA non-coding upstream 222611 56656849 ~ 56657252 (-)
G162565 NA non-coding upstream 229546 56663784 ~ 56663991 (-)
G161823 NA other downstream 101038 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 459568 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 1674273 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2134780 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2431794 53969443 ~ 53971367 (-)
G162657 NA other upstream 393058 56827296 ~ 56830576 (-)
G162745 NA other upstream 680329 57114567 ~ 57117150 (-)
G162897 NA other upstream 806041 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 810143 57244381 ~ 57250155 (-)
c2h11orf16 cssa10h11orf16 other upstream 898840 57332151 ~ 57340310 (-)

Expression


Co-expression Network