LOC110492132 (LOC106561087)


Basic Information

Item Value
gene id LOC110492132
gene name LOC106561087
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56486697 ~ 56497109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566172.2
CAAATACTTTTGCTAAGAACAAGCCAACAAACTGAAGACAGATCCCCCCCCAATGTTCCTAAATGGTCTTTGTTTTGGGTGCATTGATCGCCCTCATTCGGTGCATTTGCTGAAAAGGGAATTGTAAACATATGTATAACAGTAAATCCTCGTAAAGATGGAAGAAAAGCAGTATACGTCACTGACGGTTCCTACGGATTATCTCCAACAGTGGTACCAGTCCACCCAGCAGCACCCCCAAGCTCAACATGTGATGCAGTACCATAACACAGGTCATATGGGCCATTACATGGAGGGATCCAGAGAGGACCGGGTCATGACAGAGCTGTCGGTCCACCAGGAGCTCCCAGTCCACCAAGAGCTGGACTTCCATCATGACTTCCTCGGCCATCAAGAGCCAATTGTCCAACATCATCAGCCTGTGGATACATCACAAGCTCCAATGccagggaagagaaagagaggtaggccTCCCAAACAGAAGCCTGGGGAGGGCCAACCGCAGGAGGAACACGATCAGGCAGAAGCTCTGAAGAAAGCCAAAAGGACCCTTAACCGCTTCAATGGCATGTCAGTGGATGAGGTCATGGCCAAAACCCTGCCAGACATTATTGACCACAACCTCGACATTTTGATAATTGGTATCAATCCAGGACTATTGTCAGCCTACAAGGGACGACATTACCCAAACCCAGGAAATCATTTTTGGAAATGCCTGTTCCTCTCTGGTCTTACTGATGAGCAACTCAACCACATGCACGATCGAAACTTACCGGAGAAATATGGCATTGGCTTTACCAACATGGTGGAGAGGACAACGCCAGGAAGCAAAGACCTCTCAAGCAAAGAGTTTCGTGAAGGAGGCCATCAATTGGTAGAGAAGCTGAAGAAATACAAGCCGCTAATTGCAGCTTTCAATGGAAAATGTATTTACGAAATTTTCAGCAAAGAGATCTTTGGAGTGAAGGCAAAGAAACTCGAGTTCGGCTTACAGCCGTACACAATCCCAGAAACCGAAACGGTGTGCTACTTGATGCCCTCGTCAAGCCCCCGCTGTGCCCAGTTCCCCCGCGCTCAGGACAAGGTTCACTTCTACATCAAGCTGAAGGAGCTACGGGACAAGATCAAGGGTGTGGCCCCAGTCGCCCGTGAGGTGCAAGAGACAGAGTACCACTTCGACTTGGGACTTGCCAAAGAAGATGCTAAGAGGATGGCCATCAAGGAAGAGCAGGTGGATCCGGAGTACGAGAACTGCGGTGGGGCGTCCCAGGATGCAAAGCAAAGCACCAGCTACTGCAACATTTCCTCCACCAAAGAGACTGGAATGCCCAGTAAGGACCAAGCTACAGCAATGAGCCACATGCCATACGACCAGTGGATGACACAGTCGTTTGCGGACCAGATACCGGACATTAGCTGTAACAGTAGCAATGTACCTCAACCTCAGTTGGGAGCAGAAACCTTTTGAAGAAGGTCCCACAAGAAGAGTCATTGGGTCATACCGTTTGAGGCATCATAATGCATGCGTCACACTAGAAGGAAGACGGAGGGGAAGTGGCCCATCTTGACTGGACTCCCATTTTCAAATCCTCTTTAAAACACAGGCCattttttttcttaattttgtaACTATTTATTGCATTTCATACAGCATGTGTCCAGTgtcttatttttatatttttaaagaaTGGGAATTTTGTCGTATATCTCACTTGTGGAAGTGTAATTGTGCTCTGGAATTTTCAAGTTTGTTATTACCGAGATATTAAATCAGTTGTAAAACTGA
>XM_021566180.2
TACTTTTGCTAAGAACAAGCCAACAAACTGAAGACAGATCCCCCCCCAATGTTCCTAAATGGTCTTTGTTTTGGGTGCATTGATCGCCCTCATTCGGTGCATTTGCTGAAAAGGGAATTGTAAACATATGTATAACAGGTACCAGTCCACCCAGCAGCACCCCCAAGCTCAACATGTGATGCAGTACCATAACACAGGTCATATGGGCCATTACATGGAGGGATCCAGAGAGGACCGGGTCATGACAGAGCTGTCGGTCCACCAGGAGCTCCCAGTCCACCAAGAGCTGGACTTCCATCATGACTTCCTCGGCCATCAAGAGCCAATTGTCCAACATCATCAGCCTGTGGATACATCACAAGCTCCAATGccagggaagagaaagagaggtaggccTCCCAAACAGAAGCCTGGGGAGGGCCAACCGCAGGAGGAACACGATCAGGCAGAAGCTCTGAAGAAAGCCAAAAGGACCCTTAACCGCTTCAATGGCATGTCAGTGGATGAGGTCATGGCCAAAACCCTGCCAGACATTATTGACCACAACCTCGACATTTTGATAATTGGTATCAATCCAGGACTATTGTCAGCCTACAAGGGACGACATTACCCAAACCCAGGAAATCATTTTTGGAAATGCCTGTTCCTCTCTGGTCTTACTGATGAGCAACTCAACCACATGCACGATCGAAACTTACCGGAGAAATATGGCATTGGCTTTACCAACATGGTGGAGAGGACAACGCCAGGAAGCAAAGACCTCTCAAGCAAAGAGTTTCGTGAAGGAGGCCATCAATTGGTAGAGAAGCTGAAGAAATACAAGCCGCTAATTGCAGCTTTCAATGGAAAATGTATTTACGAAATTTTCAGCAAAGAGATCTTTGGAGTGAAGGCAAAGAAACTCGAGTTCGGCTTACAGCCGTACACAATCCCAGAAACCGAAACGGTGTGCTACTTGATGCCCTCGTCAAGCCCCCGCTGTGCCCAGTTCCCCCGCGCTCAGGACAAGGTTCACTTCTACATCAAGCTGAAGGAGCTACGGGACAAGATCAAGGGTGTGGCCCCAGTCGCCCGTGAGGTGCAAGAGACAGAGTACCACTTCGACTTGGGACTTGCCAAAGAAGATGCTAAGAGGATGGCCATCAAGGAAGAGCAGGTGGATCCGGAGTACGAGAACTGCGGTGGGGCGTCCCAGGATGCAAAGCAAAGCACCAGCTACTGCAACATTTCCTCCACCAAAGAGACTGGAATGCCCAGTAAGGACCAAGCTACAGCAATGAGCCACATGCCATACGACCAGTGGATGACACAGTCGTTTGCGGACCAGATACCGGACATTAGCTGTAACAGTAGCAATGTACCTCAACCTCAGTTGGGAGCAGAAACCTTTTGAAGAAGGTCCCACAAGAAGAGTCATTGGGTCATACCGTTTGAGGCATCATAATGCATGCGTCACACTAGAAGGAAGACGGAGGGGAAGTGGCCCATCTTGACTGGACTCCCATTTTCAAATCCTCTTTAAAACACAGGCCattttttttcttaattttgtaACTATTTATTGCATTTCATACAGCATGTGTCCAGTgtcttatttttatatttttaaagaaTGGGAATTTTGTCGTATATCTCACTTGTGGAAGTGTAATTGTGCTCTGGAATTTTCAAGTTTGTTATTACCGAGATATTAAATCAGTTGTAAAACTGA

Function

NR:

description
G/T mismatch-specific thymine DNA glycosylase-like isoform X2

GO: NA

KEGG:

id description
K20813 TDG; thymine-DNA glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566172.2 False 1786 mRNA 0.47 11 56486697 56497109
XM_021566180.2 True 1711 mRNA 0.47 10 56486701 56497109

Neighbor

gene id symbol gene type direction distance location
LOC110492043 catsper2 coding upstream 257620 56207828 ~ 56229077 (+)
LOC110491996 LOC106561096 coding upstream 315733 56146461 ~ 56170964 (+)
acanb LOC106561101 coding upstream 430317 56032490 ~ 56056380 (+)
LOC110491898 map1a coding upstream 555113 55861422 ~ 55931584 (+)
scamp2 scamp2 coding upstream 629397 55841445 ~ 55857300 (+)
LOC110492152 LOC106584663 coding downstream 10527 56507636 ~ 56518535 (+)
LOC110492171 LOC106561080 coding downstream 71465 56568574 ~ 56620288 (+)
LOC110492185 LOC106561079 coding downstream 124330 56621439 ~ 56633187 (+)
LOC118944174 NA coding downstream 135617 56632726 ~ 56632853 (+)
LOC110492175 LOC106561078 coding downstream 136388 56633497 ~ 56637636 (+)
G161949 LOC105006114 non-coding upstream 11720 56473760 ~ 56474977 (+)
G161893 NA non-coding upstream 104388 56380623 ~ 56382309 (+)
G161886 NA non-coding upstream 124616 56361607 ~ 56362081 (+)
G161866 NA non-coding upstream 150076 56336419 ~ 56336621 (+)
G161862 NA non-coding upstream 150780 56335629 ~ 56335917 (+)
G161956 NA non-coding downstream 7246 56504355 ~ 56504559 (+)
G161964 NA non-coding downstream 24625 56521734 ~ 56521968 (+)
G161987 NA non-coding downstream 50888 56547997 ~ 56597839 (+)
G161984 NA non-coding downstream 53589 56550698 ~ 56611209 (+)
G162033 NA non-coding downstream 150253 56647362 ~ 56648579 (+)
G161687 NA other upstream 234099 56245044 ~ 56252598 (+)
G160569 NA other upstream 539452 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1757837 54728296 ~ 54728860 (+)
G159415 NA other upstream 2133309 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2464793 54021608 ~ 54021904 (+)
G162130 NA other downstream 551205 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1431041 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1718568 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3448599 59945708 ~ 59953165 (+)
G166878 NA other downstream 4018523 60515632 ~ 60515880 (+)

Expression


Co-expression Network