LOC110492152 (LOC106584663)


Basic Information

Item Value
gene id LOC110492152
gene name LOC106584663
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56507636 ~ 56518535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951024.1
TCAATATAAATGTTTGTTATACATGCACTAAAAGTTGACGTATTATTTCAGGAGAAGAACGTTTTTACTTTTTTTCCCTATTAATCATGTTGGTATATTCCCATGTCAAAGTTGACGTGCATCGCTTTCTTTGTTGCATGCTAGAAAGTCCAAAGGGAAATTGATAGAGTACAATCGTTTtcaagaaaaataataataaacacattCAACCATATCTGTAAGAGGATTCAGTCTACTCAACAGCTTCAAGCTCTACAGGGGCAGTAGCCGGGCATCAACCACCATCACAGTCCTCACCCTCACTACACAGAGGGACCAAGACAGAGGGTCATGGCTCATATGGTTGTCAGTCATGAGCCCATGGCACTGCAAGAGCCCGCCAACATAGCGAAAGATTTAAAAGCAAATGCTTCATCGAACAAATCAGTGTTCCTGTGACAGTCGAGGCTAGTGTGAAGTTTCACAGCGAGGTGATTGGAAGATCTCTCCCTCTTGCAGCTCCAGCAAAAAAGCGAGGGAGAACGGCACAACCAAAGGAACCCAAGCCACCCAAAATGCCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGAGCCAAGGCCAAACCGGGACCCAAGCCCAAGAAAGGCAAGGAGTGTCAAGAGGCAGACGGCACGCAGGAGAAAATAGACAAGACCTTCAAGAAAGTCAAGAAGAAAAGGGACCGCTTCAAAGGCATGACTGAGGATGAGGTCATGAGTAGAACTCTGACCGACATCCTTGACCACAACCTGGACTATGTTATCATTGGAATCAACCCAGGTCTCGTGGCAGCCTATGTTGGACGATGGTTCCCTGGCCATGGAAACCATTTCTGGAAGTGCCTGTTCTTGTCCGGATTCACTGATGAGCAGCTTAACCACATGAGCGACACCAGCCTGCCAGAGAAATATAAGATCGGCTTCACCAACATGGTGGCAAGGACAACGCCTGGAAGCAAGGACCTGTCAACCAAAGAGCTACGCGAGGGCGCCTTAATTCTTGTTGAGAAGCTGAAAAAGTACAAGCCCCTAATAGCTGTTTTCAATGGAAAATGTATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAGCCCAAGAAGCTTGACTTTGGTCTGCAGCCACACAAGATACCGGACTGTGAAGTGGCATTGTATCTGATGCCCTCGTCGAGTGCCCGCTGCGCCCAGTTTCCCCGTGCCCAGGACAAAGTGCACTTCTACATCAAGCTGAGGGAATTGAGGGACCAGCTCAGGGGCGTGGCCCGATCTGAGGAGATTCAGGAGTTGGAGTACAGCTTTGACCTGGGACTGGCCAAAGAGGACGCTAAGAGGATGGCGATCAAGGAAGAGGCGTACGACCCAGGCTACGAGGCCGCCCTCGGCGGAGCGTATGGAGAGGGCGGGCCCGGGCCTGAGGAGGGCCAGAGCAACGGTCACTAACTTCTCGTTGGCTGGGAACACAGACGCTGCCGAGAAGGCAAACACTTACCAACCTCCTAcggccgccaccaccaccacagaaggACAACTCCCAGACAGACAGTGGATGAGGCAGTCTTTCACTGATCAGATTAGACATGGGTGGCTCTAAAGAACCACAGGCATGGGTGGGCAACGTATAAGAAAGGGTAAATGGCTCCTAACGAGCCCTATCTATTCGTGCACAGACCTCAAAGCCGCAcatcctttaccctcccttcAACAAGAAGCTGCACCTCTGTTTAAAGACAGAAATAATAGTTTTtagtgttttgtattttttttgccaTTTTGGAATATACACTTGGCTACTTGATAGATGGAATTGTCTAGATTTATAATTTTTAAAGGATTTGTGAAATATGagctttttttaaaaatctggttttgtcatactgtgtgtgtgtttgattgccCACAAGGCAGTCCTTTTTAAATATGTGAAATCAGGGACTTGACACTTTGTTTTAATACCGTACTTTGCCACAGGCAGGTACAGTAGGTGTAAGCAAAGCATGCATACTGTATTGGTTACTGCTCTGACAGTACAAATGGTTCTAAATCAAGCTTTTACACACGTGTCAGAGAGTCCCAAATAAACATGTGAcaaaacacatacagtaagaTGACACTGTAAGTAATGCATTGTGAAGTTTAAGATGAGCTAGTACTCTACTTTTTATATAAGTGCTGTACCTTGAGGAGAATGAACTAGACACAAGGTCAAAAAGTGATTCCACTGAGGGATGATTTAGTAATGTCTTTACAAGCCTTTTATCATGGAGTTGCAAAACTCAAGATGGGtgctatatattttttattttactttcttATGTTTAGTATGTTTCTGAAAATGTTGTTTATAAAATTATGGGGATTTTCTATTTTa
>XM_021566210.2
GTTTGTTATACATGCACTAAAAGTTGACGTATTATTTCAGGAGAAGAACGTTTTTACTTTTTTTCCCTATTAATCATGTTGGTATATTCCCATGTCAAAGTTGACGTGCATCGCTTTCTTTGTTGCATGCTAGAAAGTCCAAAGGGAAATTGATAGAGTACAATCGTTTtcaagaaaaataataataaacacattCAACCATATCTGTAAGAGGATTCAGTCTACTCAACAGCTTCAAGCTCTACAGGGGCAGTAGCCGGGCATCAACCACCATCACAGTCCTCACCCTCACTACACAGAGGGACCAAGACAGAGGGTCATGGCTCATATGGTTGTCAGTCATGAGCCCATGGCACTGCAAGAGCCCGCCAACATAGCGAAAGCTCCAGCAAAAAAGCGAGGGAGAACGGCACAACCAAAGGAACCCAAGCCACCCAAAATGCCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGAGCCAAGGCCAAACCGGGACCCAAGCCCAAGAAAGGCAAGGAGTGTCAAGAGGCAGACGGCACGCAGGAGAAAATAGACAAGACCTTCAAGAAAGTCAAGAAGAAAAGGGACCGCTTCAAAGGCATGACTGAGGATGAGGTCATGAGTAGAACTCTGACCGACATCCTTGACCACAACCTGGACTATGTTATCATTGGAATCAACCCAGGTCTCGTGGCAGCCTATGTTGGACGATGGTTCCCTGGCCATGGAAACCATTTCTGGAAGTGCCTGTTCTTGTCCGGATTCACTGATGAGCAGCTTAACCACATGAGCGACACCAGCCTGCCAGAGAAATATAAGATCGGCTTCACCAACATGGTGGCAAGGACAACGCCTGGAAGCAAGGACCTGTCAACCAAAGAGCTACGCGAGGGCGCCTTAATTCTTGTTGAGAAGCTGAAAAAGTACAAGCCCCTAATAGCTGTTTTCAATGGAAAATGTATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAGCCCAAGAAGCTTGACTTTGGTCTGCAGCCACACAAGATACCGGACTGTGAAGTGGCATTGTATCTGATGCCCTCGTCGAGTGCCCGCTGCGCCCAGTTTCCCCGTGCCCAGGACAAAGTGCACTTCTACATCAAGCTGAGGGAATTGAGGGACCAGCTCAGGGGCGTGGCCCGATCTGAGGAGATTCAGGAGTTGGAGTACAGCTTTGACCTGGGACTGGCCAAAGAGGACGCTAAGAGGATGGCGATCAAGGAAGAGGCGTACGACCCAGGCTACGAGGCCGCCCTCGGCGGAGCGTATGGAGAGGGCGGGCCCGGGCCTGAGGAGGGCCAGAGCAACGGTCACTAACTTCTCGTTGGCTGGGAACACAGACGCTGCCGAGAAGGCAAACACTTACCAACCTCCTAcggccgccaccaccaccacagaaggACAACTCCCAGACAGACAGTGGATGAGGCAGTCTTTCACTGATCAGATTAGACATGGGTGGCTCTAAAGAACCACAGGCATGGGTGGGCAACGTATAAGAAAGGGTAAATGGCTCCTAACGAGCCCTATCTATTCGTGCACAGACCTCAAAGCCGCAcatcctttaccctcccttcAACAAGAAGCTGCACCTCTGTTTAAAGACAGAAATAATAGTTTTtagtgttttgtattttttttgccaTTTTGGAATATACACTTGGCTACTTGATAGATGGAATTGTCTAGATTTATAATTTTTAAAGGATTTGTGAAATATGagctttttttaaaaatctggttttgtcatactgtgtgtgtgtttgattgccCACAAGGCAGTCCTTTTTAAATATGTGAAATCAGGGACTTGACACTTTGTTTTAATACCGTACTTTGCCACAGGCAGGTACAGTAGGTGTAAGCAAAGCATGCATACTGTATTGGTTACTGCTCTGACAGTACAAATGGTTCTAAATCAAGCTTTTACACACGTGTCAGAGAGTCCCAAATAAACATGTGAcaaaacacatacagtaagaTGACACTGTAAGTAATGCATTGTGAAGTTTAAGATGAGCTAGTACTCTACTTTTTATATAAGTGCTGTACCTTGAGGAGAATGAACTAGACACAAGGTCAAAAAGTGATTCCACTGAGGGATGATTTAGTAATGTCTTTACAAGCCTTTTATCATGGAGTTGCAAAACTCAAGATGGGtgctatatattttttattttactttcttATGTTTAGTATGTTTCTGAAAATGTTGTTTATAAAATTATGGGGATTTTCTATTTTa
>XM_036951022.1
ggatgccacctttccaacaattcagtttgtcaaacttctgccctgctagagctgctctggtcaactgtaagtgctgttattgtgaagtggaaacatcagGGAGCAACATCAGCTCGGACGCAAAGTGGATTCAGTCTACTCAACAGCTTCAAGCTCTACAGGGGCAGTAGCCGGGCATCAACCACCATCACAGTCCTCACCCTCACTACACAGAGGGACCAAGACAGAGGGTCATGGCTCATATGGTTGTCAGTCATGAGCCCATGGCACTGCAAGAGCCCGCCAACATAGCGAAAGCTCCAGCAAAAAAGCGAGGGAGAACGGCACAACCAAAGGAACCCAAGCCACCCAAAATGCCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGAGCCAAGGCCAAACCGGGACCCAAGCCCAAGAAAGGCAAGGAGTGTCAAGAGGCAGACGGCACGCAGGAGAAAATAGACAAGACCTTCAAGAAAGTCAAGAAGAAAAGGGACCGCTTCAAAGGCATGACTGAGGATGAGGTCATGAGTAGAACTCTGACCGACATCCTTGACCACAACCTGGACTATGTTATCATTGGAATCAACCCAGGTCTCGTGGCAGCCTATGTTGGACGATGGTTCCCTGGCCATGGAAACCATTTCTGGAAGTGCCTGTTCTTGTCCGGATTCACTGATGAGCAGCTTAACCACATGAGCGACACCAGCCTGCCAGAGAAATATAAGATCGGCTTCACCAACATGGTGGCAAGGACAACGCCTGGAAGCAAGGACCTGTCAACCAAAGAGCTACGCGAGGGCGCCTTAATTCTTGTTGAGAAGCTGAAAAAGTACAAGCCCCTAATAGCTGTTTTCAATGGAAAATGTATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAGCCCAAGAAGCTTGACTTTGGTCTGCAGCCACACAAGATACCGGACTGTGAAGTGGCATTGTATCTGATGCCCTCGTCGAGTGCCCGCTGCGCCCAGTTTCCCCGTGCCCAGGACAAAGTGCACTTCTACATCAAGCTGAGGGAATTGAGGGACCAGCTCAGGGGCGTGGCCCGATCTGAGGAGATTCAGGAGTTGGAGTACAGCTTTGACCTGGGACTGGCCAAAGAGGACGCTAAGAGGATGGCGATCAAGGAAGAGGCGTACGACCCAGGCTACGAGGCCGCCCTCGGCGGAGCGTATGGAGAGGGCGGGCCCGGGCCTGAGGAGGGCCAGAGCAACGGTCACTAACTTCTCGTTGGCTGGGAACACAGACGCTGCCGAGAAGGCAAACACTTACCAACCTCCTAcggccgccaccaccaccacagaaggACAACTCCCAGACAGACAGTGGATGAGGCAGTCTTTCACTGATCAGATTAGACATGGGTGGCTCTAAAGAACCACAGGCATGGGTGGGCAACGTATAAGAAAGGGTAAATGGCTCCTAACGAGCCCTATCTATTCGTGCACAGACCTCAAAGCCGCAcatcctttaccctcccttcAACAAGAAGCTGCACCTCTGTTTAAAGACAGAAATAATAGTTTTtagtgttttgtattttttttgccaTTTTGGAATATACACTTGGCTACTTGATAGATGGAATTGTCTAGATTTATAATTTTTAAAGGATTTGTGAAATATGagctttttttaaaaatctggttttgtcatactgtgtgtgtgtttgattgccCACAAGGCAGTCCTTTTTAAATATGTGAAATCAGGGACTTGACACTTTGTTTTAATACCGTACTTTGCCACAGGCAGGTACAGTAGGTGTAAGCAAAGCATGCATACTGTATTGGTTACTGCTCTGACAGTACAAATGGTTCTAAATCAAGCTTTTACACACGTGTCAGAGAGTCCCAAATAAACATGTGAcaaaacacatacagtaagaTGACACTGTAAGTAATGCATTGTGAAGTTTAAGATGAGCTAGTACTCTACTTTTTATATAAGTGCTGTACCTTGAGGAGAATGAACTAGACACAAGGTCAAAAAGTGATTCCACTGAGGGATGATTTAGTAATGTCTTTACAAGCCTTTTATCATGGAGTTGCAAAACTCAAGATGGGtgctatatattttttattttactttcttATGTTTAGTATGTTTCTGAAAATGTTGTTTATAAAATTATGGGGATTTTCTATTTTa
>XM_036951023.1
TGAGGCAGTtctgagagagagGATTCAGTCTACTCAACAGCTTCAAGCTCTACAGGGGCAGTAGCCGGGCATCAACCACCATCACAGTCCTCACCCTCACTACACAGAGGGACCAAGACAGAGGGTCATGGCTCATATGGTTGTCAGTCATGAGCCCATGGCACTGCAAGAGCCCGCCAACATAGCGAAAGCTCCAGCAAAAAAGCGAGGGAGAACGGCACAACCAAAGGAACCCAAGCCACCCAAAATGCCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGAGCCAAGGCCAAACCGGGACCCAAGCCCAAGAAAGGCAAGGAGTGTCAAGAGGCAGACGGCACGCAGGAGAAAATAGACAAGACCTTCAAGAAAGTCAAGAAGAAAAGGGACCGCTTCAAAGGCATGACTGAGGATGAGGTCATGAGTAGAACTCTGACCGACATCCTTGACCACAACCTGGACTATGTTATCATTGGAATCAACCCAGGTCTCGTGGCAGCCTATGTTGGACGATGGTTCCCTGGCCATGGAAACCATTTCTGGAAGTGCCTGTTCTTGTCCGGATTCACTGATGAGCAGCTTAACCACATGAGCGACACCAGCCTGCCAGAGAAATATAAGATCGGCTTCACCAACATGGTGGCAAGGACAACGCCTGGAAGCAAGGACCTGTCAACCAAAGAGCTACGCGAGGGCGCCTTAATTCTTGTTGAGAAGCTGAAAAAGTACAAGCCCCTAATAGCTGTTTTCAATGGAAAATGTATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAGCCCAAGAAGCTTGACTTTGGTCTGCAGCCACACAAGATACCGGACTGTGAAGTGGCATTGTATCTGATGCCCTCGTCGAGTGCCCGCTGCGCCCAGTTTCCCCGTGCCCAGGACAAAGTGCACTTCTACATCAAGCTGAGGGAATTGAGGGACCAGCTCAGGGGCGTGGCCCGATCTGAGGAGATTCAGGAGTTGGAGTACAGCTTTGACCTGGGACTGGCCAAAGAGGACGCTAAGAGGATGGCGATCAAGGAAGAGGCGTACGACCCAGGCTACGAGGCCGCCCTCGGCGGAGCGTATGGAGAGGGCGGGCCCGGGCCTGAGGAGGGCCAGAGCAACGGTCACTAACTTCTCGTTGGCTGGGAACACAGACGCTGCCGAGAAGGCAAACACTTACCAACCTCCTAcggccgccaccaccaccacagaaggACAACTCCCAGACAGACAGTGGATGAGGCAGTCTTTCACTGATCAGATTAGACATGGGTGGCTCTAAAGAACCACAGGCATGGGTGGGCAACGTATAAGAAAGGGTAAATGGCTCCTAACGAGCCCTATCTATTCGTGCACAGACCTCAAAGCCGCAcatcctttaccctcccttcAACAAGAAGCTGCACCTCTGTTTAAAGACAGAAATAATAGTTTTtagtgttttgtattttttttgccaTTTTGGAATATACACTTGGCTACTTGATAGATGGAATTGTCTAGATTTATAATTTTTAAAGGATTTGTGAAATATGagctttttttaaaaatctggttttgtcatactgtgtgtgtgtttgattgccCACAAGGCAGTCCTTTTTAAATATGTGAAATCAGGGACTTGACACTTTGTTTTAATACCGTACTTTGCCACAGGCAGGTACAGTAGGTGTAAGCAAAGCATGCATACTGTATTGGTTACTGCTCTGACAGTACAAATGGTTCTAAATCAAGCTTTTACACACGTGTCAGAGAGTCCCAAATAAACATGTGAcaaaacacatacagtaagaTGACACTGTAAGTAATGCATTGTGAAGTTTAAGATGAGCTAGTACTCTACTTTTTATATAAGTGCTGTACCTTGAGGAGAATGAACTAGACACAAGGTCAAAAAGTGATTCCACTGAGGGATGATTTAGTAATGTCTTTACAAGCCTTTTATCATGGAGTTGCAAAACTCAAGATGGGtgctatatattttttattttactttcttATGTTTAGTATGTTTCTGAAAATGTTGTTTATAAAATTATGGGGATTTTCTATTTTa

Function

NR:

description
G/T mismatch-specific thymine DNA glycosylase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951024.1 False 2409 mRNA 0.45 10 56507636 56518535
XM_021566210.2 False 2294 mRNA 0.46 10 56507647 56518535
XM_036951022.1 False 2208 mRNA 0.47 10 56509585 56518535
XM_036951023.1 True 2102 mRNA 0.47 10 56512579 56518535

Neighbor

gene id symbol gene type direction distance location
LOC110492132 LOC106561087 coding upstream 10527 56486697 ~ 56497109 (+)
LOC110492043 catsper2 coding upstream 278559 56207828 ~ 56229077 (+)
LOC110491996 LOC106561096 coding upstream 336672 56146461 ~ 56170964 (+)
acanb LOC106561101 coding upstream 451256 56032490 ~ 56056380 (+)
LOC110491898 map1a coding upstream 576052 55861422 ~ 55931584 (+)
LOC110492171 LOC106561080 coding downstream 50039 56568574 ~ 56620288 (+)
LOC110492185 LOC106561079 coding downstream 102904 56621439 ~ 56633187 (+)
LOC118944174 NA coding downstream 114191 56632726 ~ 56632853 (+)
LOC110492175 LOC106561078 coding downstream 114962 56633497 ~ 56637636 (+)
LOC110492444 LOC106561059 coding downstream 131008 56649543 ~ 56654865 (+)
G161956 NA non-coding upstream 3077 56504355 ~ 56504559 (+)
G161949 LOC105006114 non-coding upstream 32659 56473760 ~ 56474977 (+)
G161893 NA non-coding upstream 125327 56380623 ~ 56382309 (+)
G161886 NA non-coding upstream 145555 56361607 ~ 56362081 (+)
G161866 NA non-coding upstream 171015 56336419 ~ 56336621 (+)
G161964 NA non-coding downstream 3199 56521734 ~ 56521968 (+)
G161987 NA non-coding downstream 29462 56547997 ~ 56597839 (+)
G161984 NA non-coding downstream 32163 56550698 ~ 56611209 (+)
G162033 NA non-coding downstream 128827 56647362 ~ 56648579 (+)
G162058 NA non-coding downstream 150346 56668881 ~ 56670364 (+)
G161687 NA other upstream 255038 56245044 ~ 56252598 (+)
G160569 NA other upstream 560391 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1778776 54728296 ~ 54728860 (+)
G159415 NA other upstream 2154248 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2485732 54021608 ~ 54021904 (+)
G162130 NA other downstream 529779 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1409615 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1697142 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3427173 59945708 ~ 59953165 (+)
G166878 NA other downstream 3997097 60515632 ~ 60515880 (+)

Expression


Co-expression Network