LOC110492158 (LOC106561083)


Basic Information

Item Value
gene id LOC110492158
gene name LOC106561083
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56527654 ~ 56541534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566219.2
ccctctccctcccacaaaCTCTCTCCTGAGAAAACAAAGCTGATCTGAgtatctgtctgtgtgagagtgaaCAACAGTCCAAATGGCTCAGCAAGGAGTTCTCCTGGATCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCAGTCACTACTGCCTGTGGACACAGTTACTGTTGGAGGTGTATTGAGGACTGCTGGGATAAGAATGTTCTGAAAGGGGTCTATAGCTGTCCCCAGTGCAGACAGACCTTCACTCCAAGGCCTACTCTGAGGAAAAATAACATGTTGGCTGAGGTAGTTGAGAAACTGAAGAAGACAGTACTCCAGGCTGCTACCCCTCCTACTCTGTGCTAtgctggacctggagatgtggCGTGTGATTTCTGCACTGGgaccagaaagcagaaagccctcATGTCCTGTCTGGCGTGTTTGgcctcttactgtgagactcacctcCAACCTCACTATGAAGTTCCTGCCTTTAAGAAGCACAAATTGATTAAAGCCACAGCTCGACTACAGGAGAAGATCTGCTCTCATCATGACAAACTGCTGGAGTTTTACTGTCGTACACATCAGCAGTGTATCTGTATGCTGTGTGTGATGGATGTACATAAAGGCCATGATACAGTGTCAGCTGCAGCAGAGAGAACTGAGAAACAGAAGCAACTGGGGATGAGTCAGCAGAAGGTCCAGCAGAGAGtccagaagagagagaaggagttgaAGGAGCTCCAACAGGCTGTGGAGTCTCTCAAGCACTCTGCACAGGCAGCAGTGGATGACACTGAGAAGATCTTTACTCAGCTGATACGCTCCATTGAGAGAAGGTGCTCCGAAGTGAAGGAGCTGATCAGAGCCCAAGAGAAGGTTCAAGCGAGTCAAGCTGAAGGACTTCTGGAGCAACTGAAGCAGGAGATAGCTGAGCTGAGGAAGAGAAACGCTGAGCTGGAccagctctcacacacagaggaccACATCCATTTCCTGCAGagttatcagtctctctccagtctgaGTGTTTCTTCAGACTTACCCAGCATCACTGTCCGTCCTCTTCAGTACTTTGGATATGTGAGTAAGACTGTGtctgagctgagagagaaactaGAATACTTCCTTAAAAGAGAATGGACCAAGATCTCGACTACAGTGGATGTTTTGCCTACAGAGCCCAAGACCAGAGAACAGTTCTTACAATATTCCTGTcagctcacactggacccaaacacagcatGTGAAGAACTCTTTCTGACTGAAGGGAAGAGAAAGGTCACCTTTACAGATCAAGCCCAATCATATCCTAACCATCCAGACAGGTTCACCAACTACTACCAGgttctgtgtagagagggtctgtctggatgctgttactgggaggtggagtggagtgggcACTGGGTACATACAGCAGTCTCATATAAAGACATCAGCAGAACAAGGGCAGGTCATGCATTCGGATCCAATGACAAGTCCTGGAGTTTAGGGTGCTCTACGGGTGGTTATCGTTTCATACACAATAATGTTGTGACTAATGTACCGGGCCCTTGGTCCTCCAGAGTGGGAGTGTACCTGGATCACAAGGCAggtactctgtccttctacagcaTCTCTGACACAATGACCCTCCTCCACAAAGTCCACACCACATTTCCTCAGCCCCTCTATCCTGGGTTTCGTCTCTATGGAGCTAATGATACTGCTGAGCTGTGTAAACTGTGGTAGGGgcccacatagatactagtcatgctggtggtGACAGTCCCCATATGTGATGCTTCATTCGGCTTAGTTTTTTTTCTGCAGTTACTTCATCGGACTGATTAGATCTTCAGAGATGTaattaataaaaatgtaatgtatttATATTCTATCAAATGGAATGTTTTAATCTTGTATATTCACCATGGTGTATGTTTTTGATGTATATTGGTTTGCATTGAGCGCCATTGATACGTTTTCTATTGGTTATCGGTCTCTATGCAATTTTTCTCAGTGGCATGGAATAGGTAGTTTCACTTACTTGCTAACTAAACTATTTGGGatggtttcccggacacagattaagcccagTACTAGACTTAAAAGCATGTTCAATGGAGCTGTCTGGGAAACCCGTTCTAAATTTGGCATATTTTATGCACCCATAATTTTCAGGCGCAACATTAAACCTATCCAGCAGATGGTGCTACTGACCAAACAATAAAAAACTGCAAATATCTTGACTTGCCAGTCAATATATTGTGCTAATATGTTGTAGATGTATCGTCAATCAACTATCCCGAGTTAGGAATAGATTAAGTTAGGCCTTCTATTGTTCAGtgataaaaat

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566219.2 True 2348 mRNA 0.45 6 56527654 56541534

Neighbor

gene id symbol gene type direction distance location
c2h12orf73 NA coding downstream 40994 56484556 ~ 56486660 (-)
si:dkey-42p14.3 LOC105006113 coding downstream 43184 56479441 ~ 56484470 (-)
LOC110492118 LOC106561086 coding downstream 45077 56469565 ~ 56482577 (-)
LOC110492111 api5 coding downstream 58461 56454574 ~ 56469193 (-)
LOC110492101 NA coding downstream 93416 56402425 ~ 56434238 (-)
LOC110492166 LOC106561081 coding upstream 6303 56547837 ~ 56560787 (-)
LOC110492408 smap coding upstream 294276 56835810 ~ 56838821 (-)
LOC118941078 NA coding upstream 426614 56968148 ~ 56971786 (-)
LOC118941077 NA coding upstream 492902 57034436 ~ 57039319 (-)
zgc:113516 eki1 coding upstream 506777 57048311 ~ 57118294 (-)
G162414 NA non-coding downstream 71138 56406492 ~ 56456516 (-)
G162446 NA non-coding downstream 71590 56455639 ~ 56456064 (-)
G162435 NA non-coding downstream 88432 56436438 ~ 56439222 (-)
G162560 NA non-coding upstream 115315 56656849 ~ 56657252 (-)
G162565 NA non-coding upstream 122250 56663784 ~ 56663991 (-)
G162647 NA non-coding upstream 253761 56795295 ~ 56797167 (-)
G162662 NA non-coding upstream 274628 56816162 ~ 56816758 (-)
G162657 NA non-coding upstream 285762 56827296 ~ 56830576 (-)
G161823 NA other downstream 225559 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 584089 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 1798794 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2259301 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2556315 53969443 ~ 53971367 (-)
G162745 NA other upstream 573033 57114567 ~ 57117150 (-)
G162897 NA other upstream 698745 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 702847 57244381 ~ 57250155 (-)
c2h11orf16 cssa10h11orf16 other upstream 791544 57332151 ~ 57340310 (-)

Expression


Co-expression Network