LOC110492166 (LOC106561081)


Basic Information

Item Value
gene id LOC110492166
gene name LOC106561081
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56547837 ~ 56560787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566231.2
tgtgataaCTAATGATGACCACTAGGGTTAGGAAGAGACTCTGGCCGGTGTGTAGTGCATGACAGCTGGAAACGGACTCCAGTCTTTTTAACGTTAATTTTAACGTCTCAAAAGCGCAACGTGACAGACAATTACTTGAAAGTGGCAGCTGTCAAAATGTTGTGGAGTAAAGCCTTCTGCCGCTGCCCTGTGCTCGTCCTGAGCTTGTGGTTCTGTGTGGAAGCAGTGCCCATCGCTGTGGACAAGACTAAAGTGGAAACCCCAGAGCAGAAACTTGAGGCGCCacagagtgtggACACGGGGCTTCACTATGACCGCTACCTCAGGGAAGTCATTGATTTCCTGGAGAAGGACCAGCATTTCAGAGAGAAgctccacaacacagacatggAGGACATTAAGCAAGGCAAACTGGCCAAAGAGCTGGACTTTGTCGGCCATCACGTGAGGACCAAACTTGACGAGTTGAAGAGGCAGGAGGTGAACAGGCTACGGACACTCATCAAAGCTAAACAAGACGTTGAGGGAGGGCATGAAATGAACCACAAGGCGCTGCTCATGCAGTTTGAGTACATGAACCACATGAACCCACACACCTTCGAAGTGGAGGACCTGGATAAGCTTATTAAATCGGCTACCAGTGACCTGGAAAACTATGACAAGGATCGTCACGAGGAGTTTAAGAGGTACGAGATGATGAAGGAGCACAAGAGGAAGGAGCACCTGAAGAACCTCGACGAGGAGCAACGCAAGGACGAGGAACAGCACTACGAAGAGCTGAGGAAGAAACACGCAAACCATCCCAAAATCAACCACCCTggaggtcAGGACCAGCTGAAAGAGGTCTGGAAGGAGTCTGACGGTTTGGACCCAAATGACTTTGACCCCAAGACCTTCTTCAAACTCCACGACAACAACGGAGATGGCTACATTGATCAACAGGAGCTTGAAGCCCTGTTCactaaagagcTGGAGAAGATGTACAGCCCTAATCTTGAAGAGGATGACatgacagagatggaggaggagcgaCTGCGCATGAGGGAACACGTCATGAATGAGGTGGACACCAACAAGGATAGACTGGTCTCCCTGGATGAGTTCCTGATTTCCACAAACAAGAAAGAGTTCCAAGAGCCAGACAGCTGGGAGacTCTGGAGCAGGCCCCAGCCTACACGGACGAGGAGATGCAGTTGTTTGAGGAGCAGCTGGCCCAGGAGGAGAGCAACCTCAAGCAGAAGAACGTAGAGCTGCAGAAACAGAAAGAGGAGCTGGAAAGGCAGCAGGAGCAACTTGACGCCCAGAAAGCCGAGCTGCAGCAGGCGGTGGAACAAATGCAGATAATAAAATTTGAAAAAGCAAATGCGGCCGTTGAGGTCAAAGATGGAGGAGCTACAGTAGCAGTGCCCCCTGGAGGTCAATCATTGCCAGTACTACCAGGAGACAGCCAACCTCTACCCCCGAGTCACCACCAAGACTTACCTGCACACTCTTAGCGGGCCCGGCagctttttctgtgtgtgtgaatctcttgatgtgtgtgtgtgtgtgggcgctcatgtgtttttgtgtgcatatgtgtgtaaaTTAATCTTGCAACGAATCCGTTTTAGTTAGTTTTAATGTGTTGTCGGCGCTCTACGCTCCCACATTATACCCGGACGCACACATACAGTCCAACAATTTCCAGAGACCAGCTAAACCAATCAGAATGAAGCCTTGGATTTTGACCCACTTCCAGTCGTCGCATTCCGGAGCTGGCAGGAACAGCCAGCACAACCAACGAGACTTGAAATAATTGCTGAACCAGGCATTTTGTAGACAATCCACTCTTTTGTTATTAGTTATTTTCCCTCTTGCCACAACCAGCACATGGTTCGATATGGGAAGTCATTTGGTTGAGAAGAGGGTTTTGTTCCTGAATACGTGCAATGTTTTGTTTTCTACCTAGTTAGGTATGCTACCCCGTGGGATTATTTCTGTGGGGAAAGATTTgtttaaaatacaaaatacattttggttaAATAGTTTACGGAGGTGGGTCAAATGAATGTCAATTTTGATATGCTGCTTGATAGTATGCTGTCATGATAAATAATGTAGAACCTTACCTGGAGATGGTTTACTGTGAGAACCTTGCTGATTCATTCCTGATATTAATAATTGCCCATACAGATACATTAAGCTAGAGATACATTACTGTAGTACAGAGATGCATTACACAGATACATACAGAAACATTACTGTAGTACAGAGATGCATTACAGATACATACAGAAACATTACTGTAGTACAGAGATGCATTACAGATACATACAGATACATTACTGTagtacagagatacattacacagaTACATACAGATACATTACTGTAGTACACAGATACATTAAGAAGGTACTGTAGTAATTTAATATTGGCCGAAAGAATGTTTACATGCCACAAACTGCTAATTGTTTTTGTGTAACAAAAATGCCCCATTTGATGTCGACTTAGAATGTTGTAAATTGTTTCATTGTGGTTGATAGGGACAATAGTGATAATAAGGAGTCTTAAATGACACATTCATCTTCATTTCCAGtgtctgtatttctgtgtgtgacCTTGTCTTTATTTGTGAGAGTATATATTATGATCACAGTTTAGGACCAAAGTCTATTGTGGGGAtataataaaaataacaatata
>XM_036951029.1
AAATAATTCAGAATGCCTTTTGTAaactaacactcagacatgactTTTTTTTCACACTTTACTAGCTCTGACTAGAAAATGTACTTACTGTGATGTGGTTTTCCCACCTAGCTTTTAAGATACAAACCATGTTGTGGAGTAAAGCCTTCTGCCGCTGCCCTGTGCTCGTCCTGAGCTTGTGGTTCTGTGTGGAAGCAGTGCCCATCGCTGTGGACAAGACTAAAGTGGAAACCCCAGAGCAGAAACTTGAGGCGCCacagagtgtggACACGGGGCTTCACTATGACCGCTACCTCAGGGAAGTCATTGATTTCCTGGAGAAGGACCAGCATTTCAGAGAGAAgctccacaacacagacatggAGGACATTAAGCAAGGCAAACTGGCCAAAGAGCTGGACTTTGTCGGCCATCACGTGAGGACCAAACTTGACGAGTTGAAGAGGCAGGAGGTGAACAGGCTACGGACACTCATCAAAGCTAAACAAGACGTTGAGGGAGGGCATGAAATGAACCACAAGGCGCTGCTCATGCAGTTTGAGTACATGAACCACATGAACCCACACACCTTCGAAGTGGAGGACCTGGATAAGCTTATTAAATCGGCTACCAGTGACCTGGAAAACTATGACAAGGATCGTCACGAGGAGTTTAAGAGGTACGAGATGATGAAGGAGCACAAGAGGAAGGAGCACCTGAAGAACCTCGACGAGGAGCAACGCAAGGACGAGGAACAGCACTACGAAGAGCTGAGGAAGAAACACGCAAACCATCCCAAAATCAACCACCCTggaggtcAGGACCAGCTGAAAGAGGTCTGGAAGGAGTCTGACGGTTTGGACCCAAATGACTTTGACCCCAAGACCTTCTTCAAACTCCACGACAACAACGGAGATGGCTACATTGATCAACAGGAGCTTGAAGCCCTGTTCactaaagagcTGGAGAAGATGTACAGCCCTAATCTTGAAGAGGATGACatgacagagatggaggaggagcgaCTGCGCATGAGGGAACACGTCATGAATGAGGTGGACACCAACAAGGATAGACTGGTCTCCCTGGATGAGTTCCTGATTTCCACAAACAAGAAAGAGTTCCAAGAGCCAGACAGCTGGGAGacTCTGGAGCAGGCCCCAGCCTACACGGACGAGGAGATGCAGTTGTTTGAGGAGCAGCTGGCCCAGGAGGAGAGCAACCTCAAGCAGAAGAACGTAGAGCTGCAGAAACAGAAAGAGGAGCTGGAAAGGCAGCAGGAGCAACTTGACGCCCAGAAAGCCGAGCTGCAGCAGGCGGTGGAACAAATGCAGATAATAAAATTTGAAAAAGCAAATGCGGCCGTTGAGGTCAAAGATGGAGGAGCTACAGTAGCAGTGCCCCCTGGAGGTCAATCATTGCCAGTACTACCAGGAGACAGCCAACCTCTACCCCCGAGTCACCACCAAGACTTACCTGCACACTCTTAGCGGGCCCGGCagctttttctgtgtgtgtgaatctcttgatgtgtgtgtgtgtgtgggcgctcatgtgtttttgtgtgcatatgtgtgtaaaTTAATCTTGCAACGAATCCGTTTTAGTTAGTTTTAATGTGTTGTCGGCGCTCTACGCTCCCACATTATACCCGGACGCACACATACAGTCCAACAATTTCCAGAGACCAGCTAAACCAATCAGAATGAAGCCTTGGATTTTGACCCACTTCCAGTCGTCGCATTCCGGAGCTGGCAGGAACAGCCAGCACAACCAACGAGACTTGAAATAATTGCTGAACCAGGCATTTTGTAGACAATCCACTCTTTTGTTATTAGTTATTTTCCCTCTTGCCACAACCAGCACATGGTTCGATATGGGAAGTCATTTGGTTGAGAAGAGGGTTTTGTTCCTGAATACGTGCAATGTTTTGTTTTCTACCTAGTTAGGTATGCTACCCCGTGGGATTATTTCTGTGGGGAAAGATTTgtttaaaatacaaaatacattttggttaAATAGTTTACGGAGGTGGGTCAAATGAATGTCAATTTTGATATGCTGCTTGATAGTATGCTGTCATGATAAATAATGTAGAACCTTACCTGGAGATGGTTTACTGTGAGAACCTTGCTGATTCATTCCTGATATTAATAATTGCCCATACAGATACATTAAGCTAGAGATACATTACTGTAGTACAGAGATGCATTACACAGATACATACAGAAACATTACTGTAGTACAGAGATGCATTACAGATACATACAGAAACATTACTGTAGTACAGAGATGCATTACAGATACATACAGATACATTACTGTagtacagagatacattacacagaTACATACAGATACATTACTGTAGTACACAGATACATTAAGAAGGTACTGTAGTAATTTAATATTGGCCGAAAGAATGTTTACATGCCACAAACTGCTAATTGTTTTTGTGTAACAAAAATGCCCCATTTGATGTCGACTTAGAATGTTGTAAATTGTTTCATTGTGGTTGATAGGGACAATAGTGATAATAAGGAGTCTTAAATGACACATTCATCTTCATTTCCAGtgtctgtatttctgtgtgtgacCTTGTCTTTATTTGTGAGAGTATATATTATGATCACAGTTTAGGACCAAAGTCTATTGTGGGGAtataataaaaataacaatata

Function

NR:

description
nucleobindin-2-like

GO: NA

KEGG:

id description
K20371 NUCB; nucleobindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566231.2 False 2689 mRNA 0.45 13 56547837 56559930
XM_036951029.1 True 2661 mRNA 0.44 13 56547837 56560787

Neighbor

gene id symbol gene type direction distance location
LOC110492158 LOC106561083 coding downstream 6303 56527654 ~ 56541534 (-)
c2h12orf73 NA coding downstream 61177 56484556 ~ 56486660 (-)
si:dkey-42p14.3 LOC105006113 coding downstream 63367 56479441 ~ 56484470 (-)
LOC110492118 LOC106561086 coding downstream 65260 56469565 ~ 56482577 (-)
LOC110492111 api5 coding downstream 78644 56454574 ~ 56469193 (-)
LOC110492408 smap coding upstream 275023 56835810 ~ 56838821 (-)
LOC118941078 NA coding upstream 407361 56968148 ~ 56971786 (-)
LOC118941077 NA coding upstream 473649 57034436 ~ 57039319 (-)
zgc:113516 eki1 coding upstream 487524 57048311 ~ 57118294 (-)
LOC110492288 LOC106561064 coding upstream 592131 57152918 ~ 57235251 (-)
G162414 NA non-coding downstream 91321 56406492 ~ 56456516 (-)
G162446 NA non-coding downstream 91773 56455639 ~ 56456064 (-)
G162435 NA non-coding downstream 108615 56436438 ~ 56439222 (-)
LOC110492101 NA non-coding downstream 120539 56402425 ~ 56434238 (-)
G162560 NA non-coding upstream 96062 56656849 ~ 56657252 (-)
G162565 NA non-coding upstream 102997 56663784 ~ 56663991 (-)
G162647 NA non-coding upstream 234508 56795295 ~ 56797167 (-)
G162662 NA non-coding upstream 255375 56816162 ~ 56816758 (-)
G162657 NA non-coding upstream 266509 56827296 ~ 56830576 (-)
G161823 NA other downstream 245742 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 604272 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 1818977 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2279484 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 2576498 53969443 ~ 53971367 (-)
G162745 NA other upstream 553780 57114567 ~ 57117150 (-)
G162897 NA other upstream 679492 57240279 ~ 57241372 (-)
LOC100135818 LOC100135818 other upstream 683594 57244381 ~ 57250155 (-)
c2h11orf16 cssa10h11orf16 other upstream 772291 57332151 ~ 57340310 (-)

Expression


Co-expression Network