LOC110492171 (LOC106561080)


Basic Information

Item Value
gene id LOC110492171
gene name LOC106561080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56568574 ~ 56620288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566244.2
AATGATTTTGGTGAAATGTGATCAAACTACTTCAACAGGAACTGACGTTTATCTGCGCGAGCGGGTGGATGGATGGAAAACAATTGCAGCTGCAGGAAAATGATTACAAACATCGTACCGCTCAAAGGTGTTTGAAGAAGCAGAACTCCCGTCTGACCTGTTGACACCAGAGCTGAACTACAAACGCTGCGTACATGGCACCCTCCAGTTGACACCATGGCCCAGATATCCAGTGGTAATGGGTTCAAGCTGGATGTGGCCCAGCCAAAGGGGGTTGTGGGTAAGGAGGAGGCCCTTCGTATGGAGGCAGAGGCCTTAGCTAAACTACaaatggagaagagacagacgCTCCCGGCGACCTCgtcttccacctcctcttctgCTTCCTCACAAAACAAACTTCATCCCACCGCCGCTCCCAGGCCTACTCCTTCCTCCAGCAACCGACCGGAGAAGGATCTCATTGTCTTCCCCGAGGCCAAGAAGCAGGTAGAGAAGGACAAGTTCCGGGACATCGACGTCGACAAGCTGACCAACCAGGAGCTAGAGAAGCTCCTGCTGGACGACAGCTTCGGGGCCAACAGCAGCAAGGCCTCGCGGCCCTCCTTGCTGCTGGGGTTCAACCTCAGCGCTTCTTACCCGGGGGGCCACGCCACCTGCAGTCCCTCGCCCTTCCACAGCGGCCAGTGGACACCCTCCATGCTCACCACCCCCTCCAGTTCGGGTGTGTCCACACCCACCCACCAGCAGGCTCCCATGTTCCCTTCTGCTCCGTTCCCTAACCCCGAAAACTTCTCCTTCCACAATGGCTTTTCACCGGCCATGCCGCCCTACATAGGCCTGCCCGGCCCGCAGACCTCATTCATGGCCTTCACTCCCATCCAGCAGCCCGGGACCATGGTGTTCCAGCAGCCCACCGTCACCCTGGAGATGGCCAAGCTCTTCGACAAGATCCACAGTACCTCGGAATACTTGAAGAACGGCAGGTCGGCCAGCACTGACCTGGATTCTTCGTCGACTAGCGTCGCGTCCCTGGCGCCCAACCCACCGCAACCTGCCGTGGAATCCCCTGCTTTCAGCCGCTTCGAGTGGCTGGACCTGGACCCACTCAACAAGCGCAAAGCTGAGGGCGAGGAGGGCTCCTCCCTGGCATCGCGCGGTACAGTAATGGTGGTGGGAGGACCAGCTGGAGGGGACCCCTGGGATGCCGTGCTGCTCGACGAGACAGAGGGCGTGGCTGATGGCAGCAGTCCACCCGTGGAGGTGACAGGTCAACTCGCGGGTCGCTCTCAGCCCCGGAGGTCGTCGACGGGGGCAGCGGTCACCAGGAACCACTCCCTTACCATCCCAGCGTCCTCATCCCAGCAAAAGCCAAACAATCAGCACGATAAGGGAAGTGGGAAAGCACTGGCAAAGTACACCGCCCTGGAGGAAAAGGAAGCCCAGAACCTGGAAGTTGTAGCCTTCTGTGAAGACGTAGCAataCTGAGGTCAAAGTTCGCCCACGATGACCTCCACACCAACCCGGGGTACGTGCTGAGCGCGGTGATCCCCCAGAGGGACGGGGGAGGGGACAACGGCTGCAGCGTCAAGGTGTCCATCGAGATCTCTGAGTCCCAGGAGCCTGTCACTTTCACCTGCGACGTGAGTTCTCCTGTTGAGCTCCTCATCATGCAAGCCCTGTGTTGGGTCCACGATGACCTCAACCAGGTGGACATCGGCAGCTACGTCCTCAAGGTCTGCGGCCAAGAGGAGGTGCTGCAAAATAAGCACAGCCTGGGCAGCCACGAGTACGTACAGAACTGCAGGAAGTGGGAGGCAGAGATCAAGCTCCAGCTGCTCTCACAGAGCACCATGAGAAGGGATCTGGCACGAACGGCGGAAGACGACACCTCTCAGGTGGACTTGGAGAGGCACTTGGGCCAAGTGGAGAGGCCGTTCAAGGAGAACGTCACCAGacaaggCCTGGCCGACTATCTGGAAGGCTACCACAATCAAGTCAACATCTGCCTGCAGAATGAGAGCACCCAGTATAAGACGGTGGATCGGGTGGTGCAGACAGTGAAGAACCTCTGCTGTGCCCTGGACGAGGTGGAGACGCAGGCCATCACAGAAGCAGTGAGAAGGGTTAAGCGTTCTGTCAACCTCCCCAGGACACGCTCGCCAGAGGTGGGCTCCAAATCCTCGGCAAATGGTCACCTCAGCCCCGTGGAGGAGTGCATGGGCTTCCTAACGGACGCTGTCTACGACCTGGCCAAGCTGTACTTGCGCTCCTTCTGccccgtctcctcctcttcccccgaCCCCTCCTCCAACTCCCAGCATACCGAGGGGGAGTCTGCTGCGGAGGGGCGTGGCAGCAAGGAGGCCTCGGGCACCACGGACCATCTGCAGTTCACCCTGTTTGCCATGCACGGCATCCCCGCCGTCTGGGTCAGCAGCTATGAGAAGTACTACCTGATGTGTGCTCTGACTCACAACGGCAAGAACCTGTTCAAGCCCATCCAGTCCAAGAAAGTGGGCACCTACAAGAGCTTCTTCTACCACATAAAATGGGACGAAATGATCAACTTTCCAATGGCGGTGTCCCTGCTTCCATTGGAGTCGATgctgactctctccctctttggGGTCCTGAACCAGAACGCCAGCGGCTCCCCAGACTCCAACAAACAGCGCAAGGGACCAGAAGTGCTGGGCAAAATCTCCCTGCCCCTATTTGACTTCCGACGGGTGCTGGCGAGGGGAACCAAGCTGCTGTGTCTGTGGACCTCTCCTCAGGCTGCCTCTGCTGCAGCCGGGATCCGGAGGAAGAACCTGGCCGAGAGGATCATACTGCAGgtcGACTTCCCCAGCCCAGCAGTGGACGTGCTGTACGTGGGGCCCCAGGAGAGCCCCTGCCCTGACCCCAACACCCTGGAGGAGCTGGACCCTGACCTGCGCCGCCGGGTGGAGAAACTTTGCAGCCGAGCCTCTACCTTCGGGTTGACGCGGGCTGACCGCCAGCTGCTGTGGGACCAGCGGCACCACTGCCGAGCCCACACCCACAGCCTGCCCAAGGTGCTGGCCAGCGCCCCCAGCTGGGACTGGGGCAGCATGGCTGAGATTCACGCCCTCCTCCACAACTGGCCCTCACTCCAACCCGTCTGTGCCCTGGAGCTGCTCGACTCTAAGTTTGCTGACACAGAGGTGAGGAGTGTGGCTGTCAGCTGGATCGAATCCAGCAGTGATGACGAGTTGGCCGACTACCTGCCTCAGCTCGTGCAGGCGCTGAAGTTTGAGTGTCACCTGAAGAACGCCCTGGTGATATTCCTGCTGTCCAGAGCACAGGGCAACGTCAACATCACCCTTTACCTGTACTGGCTACTGAGGGATGCGGTGCAGGACCCCGCGTTTGGCCGGAGGTACGACCAGGTGCTGGGGGCCCTGCTTTGTCTGTGTGGGGCCGGCCTCCGGGCCGAGCTGGACAAACAGACCCGCTTGGTCACTCTGCTGGGGGTGCTGGCCGAGAAGGTCCGACAGGCCGGGGGCTACGCACGACAGgtggtgCTCCAGGAAGGTCTGGAGAGGGTGCAGTCATTCTTCCAGAGGAACAGCTGCAGACTGCCCCTCAGCCCCAGCCTGGAGGCCAAACAACTCAACATCAAGtCGTGCTCCTTCTTCAACTCCAATGCGGTGCCCCTGAAGCTGGCCCTGGTGAACGCTGACCCTCTGGGAGAGGAGATCAATGTCATGTTCAAGGTGGGAGAGGACCTGCGGCAGGACATGCTGGCTCTGCAGATGATCCGGATTATGGACCGCATCTGGCTTCAGGAGGGACTGGACCTGCGCATAGTCAACTTCAAATGCATCTCCACTGGCAAAGACAAAGGTATGGTGGAGCTGGTGCCGTCCTCAGACACCCTGAGGAAGATCCAGGCGGAGTATGGCGTGACAGGCTCCTTCAAGGACAAGCCCCTGGCAGAGTGGCTCCGCAAGTACAACCCTGCTGAGGATGAGTACGAGAAGGCGTCGGAGAACTTCATCTACTCGTGTGCGGGCTGCTGCGTGGCCACCTACGTGCTGGGTATCTGCGACCGCCACAACGACAACATCATGCTGCGCTCCACCGGTCACATGTTCCACATCGACTTCGGCAAGTTCCTGGGCCACGCCCAGATGTTCGGCAGCTTCAAAAGGGACCGTGCTCCATTTGTGCTGACCTCTGACATGGCCTACGTGATCAACGGGGGGGAGAGGCCCACCAGTCGCTTCCAGCTGTTTGTGGACCTGTGCTCCCAGGCCTACAACCTAATCCGTAAACACTCAGGCCTCTTCCTCAACCTGCTCTCACTGATGACGTTGTCAGGCCTACCAGAGCTTACTGGAGCTCAGGACCTTAAGTATGTGTACGACGCGCTGCAGCCCCAGACCACCGACGCAGAGGCCACCATCTTCTTCACCAGgttgATTGAGACCAGCCTGGGCAGCGTGGCCACCAAGTTCAACTTCTTCATCCACAACCTGGCCCAGATGCGCTTCTCTGGCCTGCCGTCCAACGACGAgcccatcctctccttctcccccaagACCTACACGCTGAAGCAGGAGGGACGCATCCGCGACGCCTCCATCTTCTCCTTCCAGAAGAGATACAACCCCGACAAGCACTACACCTATGTGGTGAGACTCTtgcgagaggggcagagcgaggcCCAGTTTCTCTTACGCACCTTCGACGAGTTCCAGGAGCTCCACAACAAGCTGTGCATCCTCTTCCCTCTGTGGAAGCTGCCAGGGTTCCCTAATAGGATGGTCTTGGGCCGTACACACATCAAGGATGTGGCGGCCAAGAGGAAGATTGAGCTCAACAGCTATGTCCACAACCTGTTGAGGAGCTCCACAGAGGTCACCCAGtGTGATCTTATCTATACATTCTTCCATCCGATCGCGAGAGACGACAAGACGGAAGGATTCGAGGCGATGGCCAAAGCACCAGAGGCGCCACCATTGAGTCCAACCTCAGGCagagtggagggggaggtgaAGCTGTCTGTTTCCTACAGGAACAGCACACTCTTCATCATGGTCATGCACATCCGAGACCTGGTATCTGAGGAGGAGACAGACCCTAACCCTTATGTGAAAACCTACCTGCTCCCAGACCCCCACAAAACCTCCAAGTGCAAAACAAAGATATCCAGAAAGACCAGGAACCCCACTTTCAACGAAATGCTGGTGTACAGTGGCTACAGCAAGGAGACCCTTGGTCTGCGGGAGCTGCAACTGAGCGTGCTTAGTGCCGAGTCGCTGAGAGAGAACTGCTACCTGGGCGGCGTCACGCTCAAACTCAAGGACTTCGACCTCAGCAAGGAGACGGTCAATTGGTACAAGCTGACCGCCGTGCCCTACTTCTAGACAACTCCACCTGGGAACAACTCCACTTCTCACCTCTTCAAAAACTCCAGAGATACACCCATATAAGGGCAGCGGAACTGGCCACTCCCCAAGGGGGGTGCTTCTAAACTCCACCCCCTTCCTCCTCAAGCTCACCTCATTCCCAACCTCTCTTTGACCCTGTCCAGAAACCCCTCCTACCCCTGAAGGCCGTTCATGTAGATCCTAAAGAATTATAAGCAATATGGTTGTAGCACCGAcctttcagatctacacaagtgcctaagggataggggctaggctaggggttgtttctgggtGTGGGGCCTTTCTCTCACTAATCATGGTTGTTTCCTCATCGTAGCAAACAATCTCCACTTATTTTGTTTGTTCCTAAACTATAACACGAGAgctgtaatgttttgtacattttgaCATTAGAGGACCAAAATGGCTTACTTTCAGAAGAGTATATATAGATtgacacatttattttttaaaaagggGCTCATTTTTACATGTAACTTTTTTCTACATAGACAAATAGGAAGCGTCTGGTTTCCTGCTAAGCTAGCTGAGAATGTCTGGGGATGTGTCCGTCTCAAACCAGACTCCAGGAAAGAGAGTGATCTTGTGTTTCCCAATCACGTGCCAAAAGAACTGATGATGATGGCAAACCACTCTTCCAAAGGGGAACCGAACAGGGTGCCGTGTTTGTGTTCACAATCTCTACTACGCTCCACTTTAACCTTATCACAGTATATTTGATAGAAATTGTGATACCCCAATTGAAAAAGAAATCTATTCTGTCAAATAATGTCAACAGTTCTTCCACTGTGAGCGTGGTACAGTACTAGCATCAGAAGGTGTTGGAATGATCAGCTCCAACTTGTCTACACACCACCATGTCTTTTTAATGGTAATTACTTGACTCCTTTTCGGGATTTGTATCACGAACACACTCTTGTTGTGCATTTGATGATGTAGGATAAGGTTGCCTCtaaacactgatctaaggtcagatGTTATATCGCCACCTATTGGTTTAAGGGTAGAATTTGGGGtggggtaagctgatcctagatctgtgctgtAGGGGTAATGTGACCTGGAGCCATATGGACAAAAAAAGGGAAAGACATCCAGGGCAAGAGATACGCTGCTTCCTCTGAGCCGACTACAAAACTAAAGATGAAATAATGAATAATGAATTTATCCTGGAGGGGTTTTAAAGAGAATATCAACAAAGACAAATAGTGACGATCCACTATTTTAAtgactgtaaaaaataaaaaataaacatgctGAGTTTGTATTATTAACATGGCCAGTTATTTATTCGTAATTGGTTATCTTAACCAGAATGAATCGGTGTGTACTGTAATCCCTTCTTTCCTAAAGCGAATTAAATGTTTTTTGAACAAAGA

Function

NR:

description
phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha

GO: NA

KEGG:

id description
K00923 PIK3C2; phosphatidylinositol-4-phosphate 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566244.2 True 6803 mRNA 0.55 33 56568574 56620288

Neighbor

gene id symbol gene type direction distance location
LOC110492152 LOC106584663 coding upstream 50039 56507636 ~ 56518535 (+)
LOC110492132 LOC106561087 coding upstream 71465 56486697 ~ 56497109 (+)
LOC110492043 catsper2 coding upstream 339497 56207828 ~ 56229077 (+)
LOC110491996 LOC106561096 coding upstream 397610 56146461 ~ 56170964 (+)
acanb LOC106561101 coding upstream 512194 56032490 ~ 56056380 (+)
LOC110492185 LOC106561079 coding downstream 1151 56621439 ~ 56633187 (+)
LOC118944174 NA coding downstream 12438 56632726 ~ 56632853 (+)
LOC110492175 LOC106561078 coding downstream 13209 56633497 ~ 56637636 (+)
LOC110492444 LOC106561059 coding downstream 29255 56649543 ~ 56654865 (+)
LOC110492194 LOC106561057 coding downstream 59420 56679708 ~ 56835186 (+)
G161964 NA non-coding upstream 46606 56521734 ~ 56521968 (+)
G161956 NA non-coding upstream 64015 56504355 ~ 56504559 (+)
G161949 LOC105006114 non-coding upstream 93597 56473760 ~ 56474977 (+)
G161893 NA non-coding upstream 186265 56380623 ~ 56382309 (+)
G161886 NA non-coding upstream 206493 56361607 ~ 56362081 (+)
G162033 NA non-coding downstream 27074 56647362 ~ 56648579 (+)
G162058 NA non-coding downstream 48593 56668881 ~ 56670364 (+)
G162059 NA non-coding downstream 49251 56669539 ~ 56669837 (+)
G162230 NA non-coding downstream 394732 57015020 ~ 57015234 (+)
G162231 NA non-coding downstream 395773 57016061 ~ 57016311 (+)
G161687 NA other upstream 315976 56245044 ~ 56252598 (+)
G160569 NA other upstream 621329 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1839714 54728296 ~ 54728860 (+)
G159415 NA other upstream 2215186 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2546670 54021608 ~ 54021904 (+)
G162130 NA other downstream 428026 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1307862 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1595389 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3325420 59945708 ~ 59953165 (+)
G166878 NA other downstream 3895344 60515632 ~ 60515880 (+)

Expression


Co-expression Network