Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110492185 |
| gene name | LOC106561079 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 56621439 ~ 56633187 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| 40S ribosomal protein S13 |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02953 | RP-S13e, RPS13; small subunit ribosomal protein S13e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021566280.2 | True | 573 | mRNA | 0.52 | 6 | 56621439 | 56633187 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492171 | LOC106561080 | coding | upstream | 1151 | 56568574 ~ 56620288 (+) |
| LOC110492152 | LOC106584663 | coding | upstream | 102904 | 56507636 ~ 56518535 (+) |
| LOC110492132 | LOC106561087 | coding | upstream | 124330 | 56486697 ~ 56497109 (+) |
| LOC110492043 | catsper2 | coding | upstream | 392362 | 56207828 ~ 56229077 (+) |
| LOC110491996 | LOC106561096 | coding | upstream | 450475 | 56146461 ~ 56170964 (+) |
| LOC110492175 | LOC106561078 | coding | downstream | 310 | 56633497 ~ 56637636 (+) |
| LOC110492444 | LOC106561059 | coding | downstream | 16356 | 56649543 ~ 56654865 (+) |
| LOC110492194 | LOC106561057 | coding | downstream | 46521 | 56679708 ~ 56835186 (+) |
| LOC110492317 | LOC106561060 | coding | downstream | 235894 | 56869081 ~ 57027778 (+) |
| LOC110492362 | LOC106561070 | coding | downstream | 656305 | 57289492 ~ 57302882 (+) |
| G161984 | NA | non-coding | upstream | 10230 | 56550698 ~ 56611209 (+) |
| G161987 | NA | non-coding | upstream | 23600 | 56547997 ~ 56597839 (+) |
| G161964 | NA | non-coding | upstream | 99471 | 56521734 ~ 56521968 (+) |
| G161956 | NA | non-coding | upstream | 116880 | 56504355 ~ 56504559 (+) |
| G161949 | LOC105006114 | non-coding | upstream | 146462 | 56473760 ~ 56474977 (+) |
| G162033 | NA | non-coding | downstream | 14175 | 56647362 ~ 56648579 (+) |
| G162058 | NA | non-coding | downstream | 35694 | 56668881 ~ 56670364 (+) |
| G162059 | NA | non-coding | downstream | 36352 | 56669539 ~ 56669837 (+) |
| G162230 | NA | non-coding | downstream | 381833 | 57015020 ~ 57015234 (+) |
| G162231 | NA | non-coding | downstream | 382874 | 57016061 ~ 57016311 (+) |
| G161687 | NA | other | upstream | 368841 | 56245044 ~ 56252598 (+) |
| G160569 | NA | other | upstream | 674194 | 55946143 ~ 55947245 (+) |
| G159889 | LOC106562215 | other | upstream | 1892579 | 54728296 ~ 54728860 (+) |
| G159415 | NA | other | upstream | 2268051 | 54352983 ~ 54353388 (+) |
| G158778 | LOC106560766 | other | upstream | 2599535 | 54021608 ~ 54021904 (+) |
| G162130 | NA | other | downstream | 415127 | 57048314 ~ 57053642 (+) |
| G163513 | LOC106561046 | other | downstream | 1294963 | 57928150 ~ 57931991 (+) |
| G163660 | LOC106561040 | other | downstream | 1582490 | 58215677 ~ 58216383 (+) |
| G166131 | lmod2 | other | downstream | 3312521 | 59945708 ~ 59953165 (+) |
| G166878 | NA | other | downstream | 3882445 | 60515632 ~ 60515880 (+) |
