LOC110492175 (LOC106561078)


Basic Information

Item Value
gene id LOC110492175
gene name LOC106561078
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56633497 ~ 56637636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566268.2
CGACGCGAACTTGTTTATTTAAGGACAGTGTCGTCGCAATCGTTCGACATTCACTCTACTACAACATCACAACTGAAAATATGCCTGCACGACTACTCAACGTTTGAGATATTTTACATTCGTAGAAAGTAATACTTCAGGGGAAAATGAAGTATTGTCTTACGGTACGACAACTGACAAGGGAGAGTAATCTAGTTGTTTTCGACGAGCGATATCAGAATACGTGAGGATAATTGTTCGAATTATAGACATGGCTCGAGTTAAAATGGCATCAAGTGGCATCAATTCTTCTGCGATAAGTTCTAATCGAACTGCGATGGAGAGGTTTGGCGACCGTGGTATGGCACTCCTACCGTGGATCATGCATATACTGACCGTACTGTGGGAACAACTACGGCCGTTGGTCCATGTCATTCACTACAGTTTCTTGTCAGGGGCCTTTCTGTCCAGTCTACAGGCTGAGGCGATGTGCTGCAGATTGGTGGACGACTTTGTGTCCCATGCCAGGATGGATAGTGATTATGGACTTTATCTTGGACACCACCCCAGCTGGAAACTGGGCTTTCCAAGTGACTGTAACCTGTTAGTGAGCAGCGCTGACCGTAGCTCCAGCTTGGATGAAATGTCTCGCAACAACAAGGAGAAAGTGTTTGACTTTAAAACCAAACATGACACCGCCGAAGATGATCTGAGTGTTTACTGGGGTAAAGAGGATGACCGAAACatgggagcatttgacagtgaggaCAGTAAAGCACTTTGCGAGTCCCTGGCCATCTCCAGCGACCCTTACAAccccttctctttcccctcttgcaATTCAAGCTGCTCCAATATGGAGGAAACAATAAATGAAGATCAAATTGGCGGCGGCGGCCTCGACTGTAACTTGTCCAGCCGGCCGGGTGAAGAACTCCAAGAGGGCCTCGGTGGCTTGACCATCTGGACCAGTCGTTCAGATAGCGAAAGCAGCTGGGGGAGTTCTGATGATTCGTGCGCAGACCTGGACGAAGAGGAGAGCGACAGACTCTGGGCGCTCTTCACCAGCCCCGTCGACCCATACAATCCCCTGTGTTTCACAGCATCTGTAGCCAGCTCAGTCCCTCACACAGACAAAACACTTACACACTCCCAGGAGGCTGAAAGGGCCTCAGTCCTGACCTCATGTTCTTCTGACACCGTTGACAGCGAGACCCCTggcccttcctcctctgaggatgACACAGAGGAGCAGCTATGGAAGTCCCGCTCCCAAAATAAAGACCCTTACCACCCTCTGAACTTCTGTGCCTGCCTCCAGAGCTCCCCTACAACCACAGAACCACCTGCCTTCAGCACTGGAGACCCACTCACCCCACAGACCTGTCCCACACAGACACCACCCAGCCAGGGTAAGCAGAGGGGCGTTGTGGCCAAAAGCCTCCAAACAACCAGGCACACAAAGCCTTGTCTACCCAAGAGACCGCTAAAGCAGCATTGCCACCCAGCTACTACACTAGTGCCCTGGAAGAGACCTGAAGCTAAAGTAACAGGAGGACAAGGACAACCTCAGGAGAAGTTCAACCACCCTCTTAAAAAGGTGCGGTTCTCACCACTTGTCCAGGTCCATGTGATGCATACTTGGCCCTTTGCCCGGCAGATGTCTCGCAAAGGACCCTGGGAGGAACTAGCCCGCGATAGAGACCGGTTCCGAAAGAGGATCCAGGAAACCGAGCAGGCCATTGGCTACTGCTTCAGTCAATCACACAGAGACACGATTCGGGCAAATTTGCTAAGCACTTCAACATCAGCCATGCCCCTGGTCCATGAGCTCTGAACATACATGTTTTACCATACCTTCCTAATGAGAACTTTTGATTGGTTGCAATGCAACATATGGTTTTAGGTCAATTATAATGTAAAGATGGTGGTTTTAGGCCAAAAGGATTTGGCATCAAATTCTACCTCAACACTGTTGCACTGATTTTTATATTGGATATAGTTTATTATTCAACATTAATGTATGTAATGTTCTTTTGTATGCCTTACAATGTAATTTATTAATGCCCTATGGAGCTTGTTTAAAGTGTTTCAATTGTACCAGTTTGAAATGTTCATCTTAATCCAGATAAGTGGTGTATTTAGAACTAAAATAATTAACAGATGGTATTTGTGATCATACTACAGTTAATAAACAACCTGTTTGACACCATAA
>XM_021566259.2
TTATTTAAGGACAGTGTCGTCGCAATCGTTCGACATTCACTCTACTACAACATCACAACTGAAAATATGCCTGCACGACTACTCAACGTTTGAGATATTTTACATTCGTAGAAAGTAATACTTCAGGGGAAAATGAAGTATTGTCTTACGGTACGACAACTGACAAGGGAGAGTAATCTAGTTGTTTTCGACGAGCGATATCAGAATACGTGAGGATAATTGTTCGAATTATAGACATGGCTCGAGTTAAAATGGCATCAAGTGGCATCAATTCTTCTGCGATAAGTTCTAATCGAACTGCGATGGAGAGGTTTGGCGACCGTGGTATGGCACTCCTACCGTGGATCATGCATATACTGACCGTACTGTGGGAACAACTACGGCCGTTGGTCCATGTCATTCACTACAGTTTCTTGTCAGttttccATATGTTCAGGTTTGAAGTTCACCTAAGAATCAACTCTGTCTCCGGAAATTCCCACACAGGGGCCTTTCTGTCCAGTCTACAGGCTGAGGCGATGTGCTGCAGATTGGTGGACGACTTTGTGTCCCATGCCAGGATGGATAGTGATTATGGACTTTATCTTGGACACCACCCCAGCTGGAAACTGGGCTTTCCAAGTGACTGTAACCTGTTAGTGAGCAGCGCTGACCGTAGCTCCAGCTTGGATGAAATGTCTCGCAACAACAAGGAGAAAGTGTTTGACTTTAAAACCAAACATGACACCGCCGAAGATGATCTGAGTGTTTACTGGGGTAAAGAGGATGACCGAAACatgggagcatttgacagtgaggaCAGTAAAGCACTTTGCGAGTCCCTGGCCATCTCCAGCGACCCTTACAAccccttctctttcccctcttgcaATTCAAGCTGCTCCAATATGGAGGAAACAATAAATGAAGATCAAATTGGCGGCGGCGGCCTCGACTGTAACTTGTCCAGCCGGCCGGGTGAAGAACTCCAAGAGGGCCTCGGTGGCTTGACCATCTGGACCAGTCGTTCAGATAGCGAAAGCAGCTGGGGGAGTTCTGATGATTCGTGCGCAGACCTGGACGAAGAGGAGAGCGACAGACTCTGGGCGCTCTTCACCAGCCCCGTCGACCCATACAATCCCCTGTGTTTCACAGCATCTGTAGCCAGCTCAGTCCCTCACACAGACAAAACACTTACACACTCCCAGGAGGCTGAAAGGGCCTCAGTCCTGACCTCATGTTCTTCTGACACCGTTGACAGCGAGACCCCTggcccttcctcctctgaggatgACACAGAGGAGCAGCTATGGAAGTCCCGCTCCCAAAATAAAGACCCTTACCACCCTCTGAACTTCTGTGCCTGCCTCCAGAGCTCCCCTACAACCACAGAACCACCTGCCTTCAGCACTGGAGACCCACTCACCCCACAGACCTGTCCCACACAGACACCACCCAGCCAGGGTAAGCAGAGGGGCGTTGTGGCCAAAAGCCTCCAAACAACCAGGCACACAAAGCCTTGTCTACCCAAGAGACCGCTAAAGCAGCATTGCCACCCAGCTACTACACTAGTGCCCTGGAAGAGACCTGAAGCTAAAGTAACAGGAGGACAAGGACAACCTCAGGAGAAGTTCAACCACCCTCTTAAAAAGGTGCGGTTCTCACCACTTGTCCAGGTCCATGTGATGCATACTTGGCCCTTTGCCCGGCAGATGTCTCGCAAAGGACCCTGGGAGGAACTAGCCCGCGATAGAGACCGGTTCCGAAAGAGGATCCAGGAAACCGAGCAGGCCATTGGCTACTGCTTCAGTCAATCACACAGAGACACGATTCGGGCAAATTTGCTAAGCACTTCAACATCAGCCATGCCCCTGGTCCATGAGCTCTGAACATACATGTTTTACCATACCTTCCTAATGAGAACTTTTGATTGGTTGCAATGCAACATATGGTTTTAGGTCAATTATAATGTAAAGATGGTGGTTTTAGGCCAAAAGGATTTGGCATCAAATTCTACCTCAACACTGTTGCACTGATTTTTATATTGGATATAGTTTATTATTCAACATTAATGTATGTAATGTTCTTTTGTATGCCTTACAATGTAATTTATTAATGCCCTATGGAGCTTGTTTAAAGTGTTTCAATTGTACCAGTTTGAAATGTTCATCTTAATCCAGATAAGTGGTGTATTTAGAACTAAAATAATTAACAGATGGTATTTGTGATCATACTACAGTTAATAAACAACCTGTTTGACACCATAA

Function

NR:

description
protein phosphatase 1 regulatory subunit 15B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566268.2 False 2194 mRNA 0.47 3 56633497 56637636
XM_021566259.2 True 2246 mRNA 0.47 3 56633511 56637636

Neighbor

gene id symbol gene type direction distance location
LOC110492185 LOC106561079 coding upstream 310 56621439 ~ 56633187 (+)
LOC118944174 NA coding upstream 644 56632726 ~ 56632853 (+)
LOC110492171 LOC106561080 coding upstream 13209 56568574 ~ 56620288 (+)
LOC110492152 LOC106584663 coding upstream 114962 56507636 ~ 56518535 (+)
LOC110492132 LOC106561087 coding upstream 136388 56486697 ~ 56497109 (+)
LOC110492444 LOC106561059 coding downstream 11907 56649543 ~ 56654865 (+)
LOC110492194 LOC106561057 coding downstream 42072 56679708 ~ 56835186 (+)
LOC110492317 LOC106561060 coding downstream 231445 56869081 ~ 57027778 (+)
LOC110492362 LOC106561070 coding downstream 651856 57289492 ~ 57302882 (+)
rpl27a rpl27a coding downstream 688692 57326328 ~ 57329184 (+)
G161984 NA non-coding upstream 22288 56550698 ~ 56611209 (+)
G161987 NA non-coding upstream 35658 56547997 ~ 56597839 (+)
G161964 NA non-coding upstream 111529 56521734 ~ 56521968 (+)
G161956 NA non-coding upstream 128938 56504355 ~ 56504559 (+)
G161949 LOC105006114 non-coding upstream 158520 56473760 ~ 56474977 (+)
G162033 NA non-coding downstream 9726 56647362 ~ 56648579 (+)
G162058 NA non-coding downstream 31245 56668881 ~ 56670364 (+)
G162059 NA non-coding downstream 31903 56669539 ~ 56669837 (+)
G162230 NA non-coding downstream 377384 57015020 ~ 57015234 (+)
G162231 NA non-coding downstream 378425 57016061 ~ 57016311 (+)
G161687 NA other upstream 380899 56245044 ~ 56252598 (+)
G160569 NA other upstream 686252 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1904637 54728296 ~ 54728860 (+)
G159415 NA other upstream 2280109 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2611593 54021608 ~ 54021904 (+)
G162130 NA other downstream 410678 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1290514 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1578041 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3308072 59945708 ~ 59953165 (+)
G166878 NA other downstream 3877996 60515632 ~ 60515880 (+)

Expression


Co-expression Network