LOC110492444 (LOC106561059)


Basic Information

Item Value
gene id LOC110492444
gene name LOC106561059
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56649543 ~ 56654865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110492444
ATGTTGAAACAGCAATCCAAGTCCACACCTACAATCGACCTCTACAAGAGTGCCGTGGATCAAGCCATTCAGAGTACCAATGGACACCTGCACCTGTTCCTCCGCTTCCTTCTCGGCCTTTCACTGAAGTCCAATCAGACTCTCTTAAGAGGCCTACTGGCACAGACAGGAAGCAGCTCACGCACCAATGAGGAAACGGTTGAGTACATCAAGGAGAAGATCAGGGAGAATCCCTCATTGGAGAGATGCATTAACTTGTTCCACTATCTAAACGAGCTGAATGACCattctctagtggaggagatccaaAGCTACCTGAGCTCAGGAAGTCTCTCTGAAGATCTCGCTCCTGCACAGTTGTCAGCTTTGGTTGTTGTGGTGTTGACTTCAGAAGAGGAGCTGGATGTGTTTGAGCTGAGAAAATACTCGGATGAGGGTCTTCTGAGGATGCTACCGGTGGTCAAAGCCTCCAGAACAGCTGTGCTCTCAGGTTGCAGAGTCACTGGGAAAAGCTGTGCTTCTCTGGCTTCAGCTCTGAAGTCAAACCCCTCCCACCTGAGAGAGTTGGATCTGAGTGGGAGAAATCCAGGGGACTCCGGCATGAGCCTGCTCTCTGCTGCACTAGAGGATCCACTCTGTAAACTGGAGACACTGAGGCTATCACGTTGTAGTGTCACAGAGGAAAGCTTGCTTCTCTGGcttcagctctgaggtcaaaccccgcgaacctgagagagctggacctgagctgCAATTATCCAGGTGACTCAGGAGTGAAACTGCTCTCTGCTCTACTGGAGGAGCCACACAAACTGAAGACTCTGAGGTGAGTTGTGGATTCACAGACaaaaggctgtgcttctctggcttcagctctgaggtcaaacccttCACACCTGAGATAACTGAATATGAGCTGGAACTACCCAGGTGACTCAGGAGTGAAGCTGATCTCTGCTTTACTGGAGGATCCGTGGTGCACACTGAAAACACCGAGATTAAGTCCATGGGCCAGAGACTGGTGACAGAACTGGAGGACGGAAGAGCATCCCAGCCCAGCAGAGCGGATGTGTCATTACTGTTATTGGGAAACTTGCTTTTCAGAGCTGGAAAGCTGCTTTCACTGTCCAAACAGGAGGAAACAAAATAGCCTGTATGGATCTCAGATCTCAGTGACAGATGTGCTGAATATCACATCCCTATTCTAATAGTGCTTACTtagcagaggtgggaccaagtcataagtaagtctcaagtcttagcactcaagtctcaagtcaagaccatcaagtcaagtctcaagtcctaaactttga

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110492444 True 1316 mRNA 0.49 5 56649543 56654865

Neighbor

gene id symbol gene type direction distance location
LOC110492175 LOC106561078 coding upstream 11907 56633497 ~ 56637636 (+)
LOC110492185 LOC106561079 coding upstream 16356 56621439 ~ 56633187 (+)
LOC118944174 NA coding upstream 16690 56632726 ~ 56632853 (+)
LOC110492171 LOC106561080 coding upstream 29255 56568574 ~ 56620288 (+)
LOC110492152 LOC106584663 coding upstream 131008 56507636 ~ 56518535 (+)
LOC110492194 LOC106561057 coding downstream 24843 56679708 ~ 56835186 (+)
LOC110492317 LOC106561060 coding downstream 214216 56869081 ~ 57027778 (+)
LOC110492362 LOC106561070 coding downstream 634627 57289492 ~ 57302882 (+)
rpl27a rpl27a coding downstream 671463 57326328 ~ 57329184 (+)
LOC118944169 NA coding downstream 672524 57327389 ~ 57327520 (+)
G162033 NA non-coding upstream 964 56647362 ~ 56648579 (+)
G161984 NA non-coding upstream 38334 56550698 ~ 56611209 (+)
G161987 NA non-coding upstream 51704 56547997 ~ 56597839 (+)
G161964 NA non-coding upstream 127575 56521734 ~ 56521968 (+)
G161956 NA non-coding upstream 144984 56504355 ~ 56504559 (+)
G162058 NA non-coding downstream 14016 56668881 ~ 56670364 (+)
G162059 NA non-coding downstream 14674 56669539 ~ 56669837 (+)
G162230 NA non-coding downstream 360155 57015020 ~ 57015234 (+)
G162231 NA non-coding downstream 361196 57016061 ~ 57016311 (+)
G162239 NA non-coding downstream 369390 57024255 ~ 57024524 (+)
G161687 NA other upstream 396945 56245044 ~ 56252598 (+)
G160569 NA other upstream 702298 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1920683 54728296 ~ 54728860 (+)
G159415 NA other upstream 2296155 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2627639 54021608 ~ 54021904 (+)
G162130 NA other downstream 393449 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1273285 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1560812 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3290843 59945708 ~ 59953165 (+)
G166878 NA other downstream 3860767 60515632 ~ 60515880 (+)

Expression


Co-expression Network