LOC110492408 (smap)


Basic Information

Item Value
gene id LOC110492408
gene name smap
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56835810 ~ 56838821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566704.2
GTAGAAGTAGGGAGACAAGATGGTGTTCCTTGTCAACAGAGGGATCCTGACATGTTGCGTGTTAAGAAGGTGGACTCAGTAGCGTTTATTACTTTGGTTATCAACTTCACAGTGCAAACGGAGAGGAAATGTGAGAAAATAGGCATCAGCGTTTGTTCTGCAGCGGCATTGCACGGAATCCTGTCGATGAACGCTCTGTCCACACATGCACCTGCGCCTGGTTGTGATTTGAAGTGGGATGgttgtttgatttatttttttgtattatttcggGTCACCAGCCCCTCTTCCCGCAATGGAATATGTTTTGTTTCAATACCCTGTACAGTAAGCGGGCGGCAATACACCAATAGGTGTAGTCTGCCATAAAAACGTAAAGAAGATCAAAGCACTGCAGCCGGAAGTTCGAATCGCTTTGTTCCGGTCGCGTTCACACACTGCAGCCACAGGTCTTTGCTATTTGTTGACAGTAGCATAGCTAGCCAGTCTGAACGGCTATGTCAATATTTTGTTGACTTAGCCAGCTGAAGCGTTGCTGTGAAAATGAGTTCTCCAGGGAATCGACACGGGACAAAAAGACCTGGCTCTCCAAGTGAAGATGGACCTACACCATGGGAAGCTGCAGATCTGGGGGACAGTGAGAGAAAGCAGAAGTTTTTGCGGTTGATGGGTGCAGGGAAGAAAGAGCACACTGGGCGCCTAGTCATTGGAGATCACAAGTCAACATCCCATGTCCGCAGTGGGGCGGAGGACAGGAGGATGAACTCTGAGCTGGAGCTGCAGTACCAGCAGGGGCTGGACGGGAAGCTGTcaggcagaaacaggagacacGTCGGCCTGGGCTTCAGTGAGCCTGAACCAGCCCCACCTTCCCCACCTGCAGAAAGCCAAAGCAAAGCAGAGCAACCAGCCAGTCCCAAAGCCCCAGACAGCCCTTCGGAAAACCAGGAGTCACCAGAGAAATCCCTTTCACAGAGCCCAAACGGCAGGACAGAGCCCAGCGCAAAAGACAAGAGGGTAGAAGACAAGAAACACAAAATGGCCTTTGTGAAGTCATCCTAAGAATGGGCGAAAAACTAAATCACTTTTTCTAACGTCGAACCACAGATTTGTAAATATGTTCTTTTGTCTCTGAAGTACTTGGTAACTTCATGGTTtaagaatgtattttttttaatgtttcaatGCTGAGCAGCGTACTACTGTAGGAGGTGACGTAATCGTCGATTGAGACAGATTCTTCCCATTATTTTGTCCATTTTTAGGAGTTCCTAACTGGAAGAGGGACTGGTCTGACGTGTTTTTAATGGATCTGAGATGAAGCAAAGGCTTTAATTAAGTTGTATTGAATGAAACCTATTGGCTCGATAGCTCTTTTACAGTCCTGTTCAAATGTCTCACCATCAGTAATAAAAGGTACTTAATGACAAACTGAA

Function

symbol description
smap stromal membrane-associated protein

NR:

description
small acidic protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566704.2 True 1436 mRNA 0.47 5 56835810 56838821

Neighbor

gene id symbol gene type direction distance location
LOC110492166 LOC106561081 coding downstream 275023 56547837 ~ 56560787 (-)
LOC110492158 LOC106561083 coding downstream 294276 56527654 ~ 56541534 (-)
c2h12orf73 NA coding downstream 349150 56484556 ~ 56486660 (-)
si:dkey-42p14.3 LOC105006113 coding downstream 351340 56479441 ~ 56484470 (-)
LOC110492118 LOC106561086 coding downstream 353233 56469565 ~ 56482577 (-)
LOC118941078 NA coding upstream 129327 56968148 ~ 56971786 (-)
LOC118941077 NA coding upstream 195615 57034436 ~ 57039319 (-)
zgc:113516 eki1 coding upstream 209490 57048311 ~ 57118294 (-)
LOC110492288 LOC106561064 coding upstream 314097 57152918 ~ 57235251 (-)
LOC100135818 LOC100135818 coding upstream 405938 57244381 ~ 57250155 (-)
G162657 NA non-coding downstream 5234 56827296 ~ 56830576 (-)
G162662 NA non-coding downstream 19052 56816162 ~ 56816758 (-)
G162647 NA non-coding downstream 38643 56795295 ~ 56797167 (-)
G162565 NA non-coding downstream 171819 56663784 ~ 56663991 (-)
G162560 NA non-coding downstream 178558 56656849 ~ 56657252 (-)
G162781 NA non-coding upstream 149404 56988225 ~ 56989720 (-)
G162797 NA non-coding upstream 174291 57013112 ~ 57013337 (-)
G162798 NA non-coding upstream 175655 57014476 ~ 57015002 (-)
G162801 NA non-coding upstream 184355 57023176 ~ 57023474 (-)
G162791 NA non-coding upstream 188464 57027285 ~ 57027775 (-)
G161823 NA other downstream 533715 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 892245 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 2106950 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2567457 54213602 ~ 54268394 (-)
G162745 NA other upstream 275746 57114567 ~ 57117150 (-)
G162897 NA other upstream 401458 57240279 ~ 57241372 (-)
c2h11orf16 cssa10h11orf16 other upstream 494257 57332151 ~ 57340310 (-)
LOC110492469 NA other upstream 756716 57583975 ~ 57601508 (-)

Expression


Co-expression Network