Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118941078 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 56968148 ~ 56971786 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transcription factor SOX-6-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005037355.1 | True | 593 | mRNA | 0.47 | 3 | 56968148 | 56971786 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492408 | smap | coding | downstream | 129327 | 56835810 ~ 56838821 (-) |
| LOC110492166 | LOC106561081 | coding | downstream | 407361 | 56547837 ~ 56560787 (-) |
| LOC110492158 | LOC106561083 | coding | downstream | 426614 | 56527654 ~ 56541534 (-) |
| c2h12orf73 | NA | coding | downstream | 481488 | 56484556 ~ 56486660 (-) |
| si:dkey-42p14.3 | LOC105006113 | coding | downstream | 483678 | 56479441 ~ 56484470 (-) |
| LOC118941077 | NA | coding | upstream | 62650 | 57034436 ~ 57039319 (-) |
| zgc:113516 | eki1 | coding | upstream | 76525 | 57048311 ~ 57118294 (-) |
| LOC110492288 | LOC106561064 | coding | upstream | 181132 | 57152918 ~ 57235251 (-) |
| LOC100135818 | LOC100135818 | coding | upstream | 272973 | 57244381 ~ 57250155 (-) |
| ric3b | ric3 | coding | upstream | 330974 | 57302760 ~ 57310851 (-) |
| G162657 | NA | non-coding | downstream | 137572 | 56827296 ~ 56830576 (-) |
| G162662 | NA | non-coding | downstream | 151390 | 56816162 ~ 56816758 (-) |
| G162647 | NA | non-coding | downstream | 170981 | 56795295 ~ 56797167 (-) |
| G162565 | NA | non-coding | downstream | 304157 | 56663784 ~ 56663991 (-) |
| G162560 | NA | non-coding | downstream | 310896 | 56656849 ~ 56657252 (-) |
| G162781 | NA | non-coding | upstream | 16439 | 56988225 ~ 56989720 (-) |
| G162797 | NA | non-coding | upstream | 41326 | 57013112 ~ 57013337 (-) |
| G162798 | NA | non-coding | upstream | 42690 | 57014476 ~ 57015002 (-) |
| G162801 | NA | non-coding | upstream | 51390 | 57023176 ~ 57023474 (-) |
| G162791 | NA | non-coding | upstream | 55499 | 57027285 ~ 57027775 (-) |
| G161823 | NA | other | downstream | 666053 | 56301355 ~ 56302095 (-) |
| LOC110491905 | ppip5k1 | other | downstream | 1024583 | 55935649 ~ 56006747 (-) |
| G159890 | LOC106562215 | other | downstream | 2239288 | 54728299 ~ 54728860 (-) |
| ambra1b | LOC106560763 | other | downstream | 2699795 | 54213602 ~ 54268394 (-) |
| G162745 | NA | other | upstream | 142781 | 57114567 ~ 57117150 (-) |
| G162897 | NA | other | upstream | 268493 | 57240279 ~ 57241372 (-) |
| c2h11orf16 | cssa10h11orf16 | other | upstream | 361292 | 57332151 ~ 57340310 (-) |
| LOC110492469 | NA | other | upstream | 623751 | 57583975 ~ 57601508 (-) |
