LOC118941077


Basic Information

Item Value
gene id LOC118941077
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57034436 ~ 57039319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037354.1
attactgccacttttagatTCAAAGAAgaccatcctcacttggggaatacTGCTTTccagttagctttgcgacagtatcaaaaatacattttggattgtttttATTCTCCTCATTCAGGTTGAAAAAGTAGGCTGATTGAGCAGCAGTTGAGGGCTCCTCGAtattgcacagtactgtctttccaataaccagtatacagtatcagttctctatgtttgaAAAGTACTATGAAGCTGTggcttggagtattgcttctCCATCCCATAAAACTCCATCGCTTACTAGGCATCAATTAGCTAACATAATTTATTTGTTTATTGGGAAGTTTAAATTAATAAGTTAGACACTCATCATACAACTTTGTTAGGTAGGTCATTTGGTTTCCATTTCCAACAAATGTTTCTTCTTCCACAGACTTTCTGGTCTTGGAACTGGTCTTGGAACTCCTGTGTTCAACAGAAACAACTTCTGTGGCTTATTGTGGGCCATTCTATCAAAGCTGAGGATGATTGCTACTGCGTAGTCATGGGGACACTAGACCTACATTTTCAGTTTTGTTTTTAACGAGTCACAGCCAAGCATGCCGCAGTCACCCGGGTCAAAATTTGCGAGTGAGGCATCCTGGTCTGTGCTGTGATGTGCGACAACGACATAAAGGACTTGGACCTGACTGAATCGATGAACTGATAGTTGTTTATTGTACCGCCACGTCTAGGTGTAACAAAGACAACTAATGAGACAACGCCCTTGGAGAGAGACCAAACCTTCTACTGTAATGACCTCATCAGACGCAAGCTACCTTTTGATGCCTCGTCGGGAAGAGAGAGCCTCTCCAAGAGTGTGTTAGCATGACCAAACCTTCTACTGTAATGACCTCATCAGACGCAAGCTACCTTTTGATGCCTCGTCGGGAAGAGAGAGCCTCTCCGAGAGCGTGTTAGCATGACCAAACCTTCTACTGTAATGACCTCATCAGACGCAAGCTACCTTTTGATGCCTCGTCGGGAAGAGAGAGCCTCTCCGAGAGCGTGTTAGCATGACCAAACCTTCTACTGTAATGACCTCATCAGACGCAAGCTACCTTTTGATGCCTCGTCGGGAAGAGAGAGCCTCTCCGAGAGCGTGTTAGTATGACCAAACCTTCTACTATAATGACCTCATCAGACGCAAGCTACCCTTTGATGCCTCGTCGGGAAGAGAGAGCCTCTCCGAGAGCGTGTTAGCATGACCAAACCTTCTACTATAATGACCTCATCAGACGCAAGCTACCTTTTGATGCCTCGTCGGGAAGAGAGAGCCTCTCCGAGAGCGTGTTAGTATGACCAAACCTTCTACTATAATGACCTCATCAGACGCAAGCTACCCTTTGATGCCTCGTCGGAAAGAGAGAGCCTCTCCAAGATGTTTGAAGAGCCTGCCTTTGTAATAATGATTTATAATTCTCTTGGTCTGAAGCAAAAATTGGc
>TU185595
gaaaggTAAGTTGAATGCACGCACTGGAGCAAtcagaaaacacaaaacaaaaacaacattaaGATACTGAAAACAGTTACTGAAAACATTTTATATTTCGGCATGTTTACAGGTCGACTCAAGGGCTTAATGGGCAGGTTTGGCTTTGACCTTATCAAGCTGAAGACAATACACTCATTTATCACTCAAAAGAAAAGGTGTTATGAGTGACTGCACCACAAACATCTTTCCAGGGTGTTGATGCAACTTCTTCCCAATCcagttccacctcaaaaagcacaagaaaaaGGATTTCCGACACCCATCATCTCAGATTGCACTGAAATGGTTTCTGTAATTTGTAACATTTGGAAATATAagttgatctctgagaaattaaggtaatggattgcacccaaattggccattttaatttataggattcagcATCTACTTTGGACCAAACTTCTTCCTACCAATGACTAAGACATGAGCACCCCCCACACCCATGCCAATTCCACCCCAGTCAATCAATCACacttatttatgaagccctttttacatcagcagattaGCCAAAAACCCAAAACAGAAAGCactgcagatgtagaagcacagtggctagggaaaactccctagaaaaggcaggaacctaggataTAATCccaaccactttgccaaagcacagccccaacaCCACTAAAGGGaaatcaacagaccaccaacttaggctgagtatagcccacaaagatctcctccaccgcacaAGCCCGAGGGGGAGCaaaaccagacaggaagatcaagtTAGTggctcaacccactcaagtcgaCCATAGCAGGGAAAAACCCTGGCACGACGTGACGcatccctcctagggatggcatggaagagtaTTAGTGAACCCCATAATTGGGCTctgagtggcgcaggggtctaaggcactgcatctcagtgcaagaggtgtaactacagtcccaGGTTagagtccaggctgtatcacatcaggccatgattgggagtctcataggggggcacacaattggcccagggtcgtaCGGGTTTTGccgcggtaggccgtcattggaaataagaatttgttcttaactgacttgcctagttatataatgGTAAAACAAAAAtaggtcagaggcagagaatcccagtgaaaagaggggaaccggccaggcagagacagaaagggtggttcgtcactccagtgccttgccggtCACCTttgcacccctgggccagactacactcaataaaGGGACCTATTGAAGAGGTGAGTTTTCAGTAAAGacaaaggttgagactgagtctgcgtctctcacatggataggcagaccattccataaaaattgggCTCAATAGGGGAAAGCCAAAACTCCAGCTACTTAGAAATTCTTGGGacttgtaggtatgtacggcaggaccaaatcagagcgGTAGAAGCAAGTCCATGTaacgctttgtaggttagcaataaaaccttgaaatcagaccTAGCCTTATCAGGAAGCTAGTTAAGGGTAGCCAGTAGAGAGGCTGGCACTGGAgcaatatgatcacatttttgggctctagtcaagattctagcagccatatttagcactgaCTGAactttatttagtgctttatccgggtagccggagaaTAGAGCATTTTaatagtctaatctagaagtgacaaaagcattgaAGTTTCTGGTTTTTGCAATGTTAAGAAGATCGATAAAAGCTGCCCTTGAAATAtacttgatatgttcgtcaaaagagagatcagggtccagagtaacgccgaggtccttcagttttatttgagacgactgtacaaccatcaagattaattgtcagatcaaacagcagatctcttagtttcttgggacctagaactagcatctctgtttggtccgagtttaaaagtcaaacgtttgccgccatccacttccttatgtctgaaacacaggcttccagggagggcaattttggggcttcaccatgtttcattgaaatgtacaactGTGTGTAGTCCGCATACTGTAGCAGTaaaagttgacattgtgtttccgaatgacatcaccaagaggtagaatatatagtgaaaacaagtGGTCCTAAATGGATCCTTGACAAACACCAAAACTTActattgatttgtcagaggacaagccaCCACagggacaaactgatatctttccgacagataagatctaatccaggcaagaacttgtccgtggagaccaattagggtttccaatctctccaaaagaatgtggtgatcgatggtgtcaaaagcgACACTAAGGTCtcggagcacgaggacagatgcagagcctcggtctgacgcagTTGAAAAGTCATTTACtgccttcacaagtgcagtctcagtgctatgaggGGTCTGAAAATAGATGGGAGCGTTTcatatacattatttgtcttcgGGACGGCAGTGAGTTagtgcgcaacagctttttctaacatttttgagaggaaagGGAGTTTctatataggccgatagtttctgagtcaaggtttggctttttcgggagaggctttattactgccacttttagatTCAAAGAAgaccatcctcacttggggaatacTGCTTTccagttagctttgcgacagtatcaaaaatacattttggattgtttttATTCTCCTCATTCAGGTTGAAAAAGTAGGCTGATTGAGCAGCAGTTGAGGGCTCCTCGAtattgcacagtactgtctttccaataaccagtatacagtatcagttctctatgtttgaAAAGTACTATGAAGCTGTggcttggagtattgcttctCCATCCCATAAAACTCCATCGCTTACTAGGCATCAATTAGCTAACATAATTTATTTGTTTATTGGGAAGTTTAAATTAATAAGTTAGACACTCATCATACAACTTTGTTAGGTAGGTCATTTGGTTTCCATTTCCAACAAATGTTTCTTCTTCCACAGACTTTCTGGTCTTGGAACTGGTCTTGGAACTCCTGTGTTCAACAGAAACAACTTCTGGTAAACTGTTTGCCACTAGTGGCAATAAATATTGTTGCCACAGGTTTGCCACAGATTGAAAAAAAAGAATCTCGAGAGAATTCTCTGGGGAACTGTTTGCTGCTACTACATATGATTGTTGCCGCAGATGCAACATTTTTTGGCACACTATTTAGTTTGCAGCAAATTTGCCACAACCTTAATTAAGGGACGTTTGCAGCAACACATACAAAAAAATGTAAGGGAAACACACCAAGAAAAGACATTGACAGCTCTTGTCTTTGGTAAATGTTTCGTGTCTTTATCCATTATTAAAAGAGATGCGAATGCAAAAGTGATTGTAAAATGGTTATTGATGTAGGGGCTGTTATTTTTTGTACCATAAGTCTTGGACATATGGCAATGCATTCTGTTACATCATTAGAAGTGCAGCTGCACACAATTCCACTGATCAAGGCTGCAATAACGCCTTTCATTCACACAATCTGACAAGCTTTCAAACGAACATTGATTGAGTATAGCATATTTAATTAATGAACTGAGCATGTGAAAGCGTCCAAGGACTTTGAATGAAGAAAGGGAAAATTGCCCTTTTGTCCATT

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037354.1 False 1467 mRNA 0.45 3 57034436 57036781
TU185595 True 3591 lncRNA 0.42 1 57035729 57039319

Neighbor

gene id symbol gene type direction distance location
LOC118941078 NA coding downstream 62650 56968148 ~ 56971786 (-)
LOC110492408 smap coding downstream 195615 56835810 ~ 56838821 (-)
LOC110492166 LOC106561081 coding downstream 473649 56547837 ~ 56560787 (-)
LOC110492158 LOC106561083 coding downstream 492902 56527654 ~ 56541534 (-)
c2h12orf73 NA coding downstream 547776 56484556 ~ 56486660 (-)
zgc:113516 eki1 coding upstream 11530 57048311 ~ 57118294 (-)
LOC110492288 LOC106561064 coding upstream 116137 57152918 ~ 57235251 (-)
LOC100135818 LOC100135818 coding upstream 207978 57244381 ~ 57250155 (-)
ric3b ric3 coding upstream 265979 57302760 ~ 57310851 (-)
c2h11orf16 cssa10h11orf16 coding upstream 295370 57332151 ~ 57340310 (-)
G162792 NA non-coding downstream 5620 57027999 ~ 57028816 (-)
G162791 NA non-coding downstream 6661 57027285 ~ 57027775 (-)
G162801 NA non-coding downstream 10962 57023176 ~ 57023474 (-)
G162798 NA non-coding downstream 19434 57014476 ~ 57015002 (-)
G162797 NA non-coding downstream 21099 57013112 ~ 57013337 (-)
G162816 NA non-coding upstream 38549 57075330 ~ 57077421 (-)
G162898 NA non-coding upstream 204978 57241759 ~ 57242011 (-)
G163113 NA non-coding upstream 217366 57254147 ~ 57256689 (-)
G163115 NA non-coding upstream 223892 57260673 ~ 57260883 (-)
G163127 NA non-coding upstream 241379 57278160 ~ 57278395 (-)
G162657 NA other downstream 203860 56827296 ~ 56830576 (-)
G161823 NA other downstream 732341 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 1090871 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 2305576 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2766083 54213602 ~ 54268394 (-)
G162745 NA other upstream 77786 57114567 ~ 57117150 (-)
G162897 NA other upstream 203498 57240279 ~ 57241372 (-)
LOC110492469 NA other upstream 558756 57583975 ~ 57601508 (-)

Expression


Co-expression Network