LOC100135818 (LOC100135818)


Basic Information

Item Value
gene id LOC100135818
gene name LOC100135818
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57244381 ~ 57250155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990280.1
GGTGGATATATAGGCTTGTGCATCGGCACTGCATGCAACACAACCAAGAGTTGGTCTTCAAGTTGAGAGAAGTCAACTTAGGCGTTTCATATAaagctatatatttttttttgcccGTTGATTAACACGAAAGGGAACCATGGTTATGTTGAAGATTTCTGCTTTCCTTGTTGCTTATGCCCTGGTCATTTGCCAGATGTACAGCTCACAAGCAGCCCCATCCAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCAGCGTTACAGCACAGAAGCGAGCCTGCAACACGGCCACCTGCGTGACTCATCGCTTGGCAGACTTCCTGAGCCGGTCGGGGGGCATGGGCAACAGTAACTTTGTCCCCACCAATGTGGGCTCCAAGGCTTTCGGCCGGCGGAGGAGAAACACCCAGATGTGAACATTCCGACAACCTTTAGGGATACGAGGTTGATCCTTCTGAACGCGATGACATCAGAACATATCTGGgggaaaacaacaaaacaaacaaagagAAAAAACACACTGGCCCCTTCATCCACTCCACCACATCTACAGAAATAAACCCCTTCCGATATTAGGACTCCTCCTCTCAATACCATAATGTTATGAAACTTTAATTTAGCTTTTGGCAAACCAGAGAAAAAAAGGGGGAGAATGACAGCAACCTCCATTATGTACATTGACAGCTGAATCCCCAAATCCCAAAGAAAATTTACagattcctttttttttttattacatgaAATTCATTTAAAATGAATTGGAAAAAAGCACCAGtgcttatttattattatttattctgTCTATAGAGCACATTTGTACCATGTGAACCATTCTCCCCGTCACTCATCCCTCCCTGTCCCCACCGGCACCTGTTTGCTGTGCTGTGCCCTGCAGGGATCGACATTAAAGATCAGCCTTCCCTAGGCTCCCTCACAACGGCTGTGTCTTGTGCCTTGATGTAAAACACTTTACATCACATGACTGTATAGTATGTATCAAGATTATAAGAagaccatgaagagaatgacaccGGACAAAAAATATTAAAGAGATTAATATTGTAACAATTGTGAATTTCAGCaagattaaaatgtattttagataCATTCGG
>XM_036990282.1
GGTGGATATATAGGCTTGTGCATCGGCACTGCATGCAACACAACCAAGAGTTGGTCTTCAAGTTGAGAGAAGTCAACTTAGGCGTTTCATATAaagctatatatttttttttgcccGTTGATTAACACGAAAGGGAACCATGGTTATGTTGAAGATTTCTGCTTTCCTTGTTGCTTATGCCCTGGTCATTTGCCAGATGTACAGCTCACAAGCAGCCCCATCCAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCGTTACAGCACAGAAGCGAGCCTGCAACACGGCCACCTGCGTGACTCATCGCTTGGCAGACTTCCTGAGCCGGTCGGGGGGCATGGGCAACAGTAACTTTGTCCCCACCAATGTGGGCTCCAAGGCTTTCGGCCGGCGGAGGAGAAACACCCAGATGTGAACATTCCGACAACCTTTAGGGATACGAGGTTGATCCTTCTGAACGCGATGACATCAGAACATATCTGGgggaaaacaacaaaacaaacaaagagAAAAAACACACTGGCCCCTTCATCCACTCCACCACATCTACAGAAATAAACCCCTTCCGATATTAGGACTCCTCCTCTCAATACCATAATGTTATGAAACTTTAATTTAGCTTTTGGCAAACCAGAGAAAAAAAGGGGGAGAATGACAGCAACCTCCATTATGTACATTGACAGCTGAATCCCCAAATCCCAAAGAAAATTTACagattcctttttttttttattacatgaAATTCATTTAAAATGAATTGGAAAAAAGCACCAGtgcttatttattattatttattctgTCTATAGAGCACATTTGTACCATGTGAACCATTCTCCCCGTCACTCATCCCTCCCTGTCCCCACCGGCACCTGTTTGCTGTGCTGTGCCCTGCAGGGATCGACATTAAAGATCAGCCTTCCCTAGGCTCCCTCACAACGGCTGTGTCTTGTGCCTTGATGTAAAACACTTTACATCACATGACTGTATAGTATGTATCAAGATTATAAGAagaccatgaagagaatgacaccGGACAAAAAATATTAAAGAGATTAATATTGTAACAATTGTGAATTTCAGCaagattaaaatgtattttagataCATTCGG
>XM_036990272.1
GCACTGAGCAACAGGCTTGGACCCCGTTCATGCCTGGACATGCCAAGGCACAACTCAGAgaatgtcctgtcctgtactgggcATGGCGAGACAGAGGGATAGTTCGCTCCATGGAGAAGAGTGCAGGACTATCAAGTTTCCTTTTGGCTGTTTGGATGGAGGGTGTCATGGAGCGATAGAAGGATGGATGTGTAGCTTGAGAGATCAGTGGTACTGAGCTGAACTAGCACGGGAACCATGGTTATGTTGAAGATTTCTGCTTTCCTTGTTGCTTATGCCCTGGTCATTTGCCAGATGTACAGCTCACAAGCAGCCCCATCCAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCATGGAAAGGCCCATTACCAAGCGCTGCTCTAACCTCAGCACCTGCGTGCTGGGCAAACTGTCCCAGGACCTGCACAAATTACAAACGTTTCCCCGCACGGACGTGGGCGCGGGCACGCCTGGCAAGAAACGCAGCGCGCCCGAGAGCGAACGCTATGCAAGCTACGGGAAGACATTTGACAGCATCTAACCCTCCGCCCTCCTCCTATTCCCTCTCTTTTCATTATaacgtcctcctggtttttgttTGACAAGTCTCAGTTGCATGTGGATTTTTCCTGCTTGATTGACCTAAGAGCGAATCTCCCATTGCAACCCCCACTTCttcatttttgtattattttgacAATTCCTTTCCGTTTTCGGCAAAGAATGACATCTTGTATCTGTTCAGACAATCAACTCTTCTAAATTGCAATTATTCAAAAGAATGAATCAACATATATCGATTTTCTTTCAGTGTGTATATTCATATAATTTGATTACATTTAAAATTCCTGATAACCCAAATTCCTAAGAGATAACCTAAGTAATATTCAACCATAATAAATAGTTTCTTCATGCCTCACCATGTTTCTTGTTCAATAAACCTATTTTTCTACCAGGAAGGCTTTTACTTTTTATTCTTAAGGAATAGAATATTAGTAATTAAACAATTTGTTTTATGGACCTAGCTTTGGCTCTTCCAACAGCGGCATTTCATATTTTTTCATTGCAGGATAGAGTAAATCATAGTTATTATAGCATTTCCATTACCCTTGAACTATCTCTAGAACCTTCACCAAGTCTCAAGGTAAGAATTATGATCGACTGAACCATTCTAATGATCTAACATTTTCAGAGACTATATTAATCCACGGTCTACTTGTATGTGTTTAGTTGTAATTGTTCTACTCCTGTTAATGACAATGACACTTTCATTTTAATGGAGGTGTCGTAAAGCAGATGTTTTAATTACATTGAACCGTATTGCTTGATTAGATAAggaaatagtgtgtgtgtttgatagggtgtgtgtttgtgcatgtgcttGAGTATGTGTACATTTGTAAGTGTCTGGCATGAGACGCTTTTGTGCgtctgtgtactgtatgtgtatgaggTACTGTTAACCCTGTCTCCATTC
>XM_036990288.1
CTTGTGCATCGGCACTGCATGCAACACAACCAAGAGTTGGTCTTCAAGTTGAGAGAAGTCAACTTAGGCGTTTCATATAaagctatatatttttttttgcccGTTGATTAACACGAAAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCATGGAAAGGCCCATTACCAAGCGCTGCTCTAACCTCAGCACCTGCGTGCTGGGCAAACTGTCCCAGGACCTGCACAAATTACAAACGTTTCCCCGCACGGACGTGGGCGCGGGCACGCCTGGCAAGAAACGCAGCGCGCCCGAGAGCGAACGCTATGCAAGCTACGGGAAGACATTTGACAGCATCTAACCCTCCGCCCTCCTCCTATTCCCTCTCTTTTCATTATaacgtcctcctggtttttgttTGACAAGTCTCAGTTGCATGTGGATTTTTCCTGCTTGATTGACCTAAGAGCGAATCTCCCATTGCAACCCCCACTTCttcatttttgtattattttgacAATTCCTTTCCGTTTTCGGCAAAGAATGACATCTTGTATCTGTTCAGACAATCAACTCTTCTAAATTGCAATTATTCAAAAGAATGAATCAACATATATCGATTTTCTTTCAGTGTGTATATTCATATAATTTGATTACATTTAAAATTCCTGATAACCCAAATTCCTAAGAGATAACCTAAGTAATATTCAACCATAATAAATAGTTTCTTCATGCCTCACCATGTTTCTTGTTCAATAAACCTATTTTTCTACCAGGAAGGCTTTTACTTTTTATTCTTAAGGAATAGAATATTAGTAATTAAACAATTTGTTTTATGGACCTAGCTTTGGCTCTTCCAACAGCGGCATTTCATATTTTTTCATTGCAGGATAGAGTAAATCATAGTTATTATAGCATTTCCATTACCCTTGAACTATCTCTAGAACCTTCACCAAGTCTCAAGGTAAGAATTATGATCGACTGAACCATTCTAATGATCTAACATTTTCAGAGACTATATTAATCCACGGTCTACTTGTATGTGTTTAGTTGTAATTGTTCTACTCCTGTTAATGACAATGACACTTTCATTTTAATGGAGGTGTCGTAAAGCAGATGTTTTAATTACATTGAACCGTATTGCTTGATTAGATAAggaaatagtgtgtgtgtttgatagggtgtgtgtttgtgcatgtgcttGAGTATGTGTACATTTGTAAGTGTCTGGCATGAGACGCTTTTGTGCgtctgtgtactgtatgtgtatgaggTACTGTTAACCCTGTCTCCATTC
>NM_001124214.1
TGGTCTTCAAGTTGAGAGAAGTCAACTTAGGCGTTTCATATAaagctatatatttttttttgcccGTTGATTAACACGAAAGGGAACCATGGTTATGTTGAAGATTTCTGCTTTCCTTGTTGCTTATGCCCTGGTCATTTGCCAGATGTACAGCTCACAAGCAGCCCCATCCAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCATGGAAAGGCCCATTACCAAGCGCTGCTCTAACCTCAGCACCTGCGTGCTGGGCAAACTGTCCCAGGACCTGCACAAATTACAAACGTTTCCCCGCACGGACGTGGGCGCGGGCACGCCTGGCAAGAAACGCAGCGCGCCCGAGAGCGAACGCTATGCAAGCTACGGGAAGACATTTGACAGCATCTAACCCTCCGCCCTCCTCCTATTCCCTCTCTTTTCATTATaacgtcctcctggtttttgttTGACAAGTCTCAGTTGCATGTGGATTTTTCCTGCTTGATTGACCTAAGAGCGAATCTCCCATTGCAACCCCCACTTCttcatttttgtattattttgacAATTCCTTTCCGTTTTCGGCAAAGAATGACATCTTGTATCTGTTCAGACAATCAACTCTTCTAAATTGCAATTATTCAAAAGAATGAATCAACATATATCGATTTTCTTTCAGTGTGTATATTCATATAATTTGATTACATTTAAAATTCCTGATAACCCAAATTCCTAAGAGATAACCTAAGTAATATTCAACCATAATAAATAGTTTCTTCATGCCTCACCATGTTTCTTGTTCAATAAACCTATTTTTCTACC
>TU185975
AGTTGGTCTTCAAGTTGAGAGAAGTCAACTTAGGCGTTTCATATAaagctatatatttttttttgcccGTTGATTAACACGAAAGGGAACCATGGTTATGTTGAAGATTTCTGCTTTCCTTGTTGCTTATGCCCTGGTCATTTGCCAGATGTACAGCTCACAAGCAGCCCCATCCAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCGTTACAGCACAGAAGCGAGCCTGCAACACGGCCACCTGCGTGACTCATCGCTTGGCAGACTTCCTGAGCCGGTCGGGGGGCATGGGCAACAGTAACTTTGTCCCCACCAATGTGGGCTCCAAGGCTTTCGGCCGGCGGAGGAGAAACACCCAGATGTGAACATTCCGACAACCTTTAGGGATACGAGGTTGATCCTTCTGAACGCGATGACATCAGAACATATCTGGgggaaaacaacaaaacaaacaaagagAAAAAACACACTGGCCCCTTCATCCACTCCACCACATCTACAGAAATAAACCCCTTCCGATATTAGGACTCCTCCTCTCAATACCATAATGTTATGAAACTTTAATTTAGCTTTTGGCAAACCAGAGAAAAAAAGGGGGAGAATGACAGCAACCTCCATTATGTACATTGACAGCTGAATCCCCAAATCCCAAAGAAAATTTACagattcctttttttttttattacatgaAATTCATTTAAAATGAATTGGAAAAAAGCACCAGtgcttatttattattatttattctgTCTATAGAGCACATTTGTACCATGTGAACCATTCTCCCCGTCACTCATCCCTCCCTGTCCCCACCGGCACCTGTTTGCTGTGCTGTGCCCTGCAGGGATCGACATTAAAGATCAGCCTTCCCTAGGCTCCCTCACAACGGCTGTGTCTTGTGCCTTGATGTAAAACACTTTACATCACATGACTGTATAGTATGTATCAAGATTATAAGAagaccatgaagagaatgacaccGGACAAAAAATATTAAAGAGATTAATATTGTAACAATTGTGAATTTCAGCaagattaaaatgtattttagataCATTCGGGTTTGGGGTACTTGTGTTGTTCTTCAAGGTTTAACGAAGTATTTAGGTGAAGAGAGAACCGTCGTGTTGTTGatcttttttttcacctttactGTACTGTGCGATGAGTAGCTTTCAGACCATGCCGATTTCTCCTGAACTCTCATGGACTCTCCTGAACTCGTGAATGCATTGGTCTCACTGTGTGACACACGTTGGGAATTCGACAGCACAGAAATCTGTCCAAACTAGTTCAGTCCAAACCACTCACACTGTTttaaacatactgtacacaacttATGCAAATGGTCCTGTGACACATCCATTTCCATACAAAAGACAAACCTTTCATAGTAAAACCCAAAAATGGAAACCAATAATACTAGGTTGAAGATAACA
>TU185976
AGTTGGTCTTCAAGTTGAGAGAAGTCAACTTAGGCGTTTCATATAaagctatatatttttttttgcccGTTGATTAACACGAAAGGGAACCATGGTTATGTTGAAGATTTCTGCTTTCCTTGTTGCTTATGCCCTGGTCATTTGCCAGATGTACAGCTCACAAGCAGCCCCATCCAGACCGGGCATAGAGTCCATGACAGACCGAGTCACCCTTACGGACTACGAGGCAAGAAGGTTACTCAACGCCATAGTCAAGGAGTTTGTGCAGATGACAGCCGAAGAGCTGGAGCAGCAAGAGAATGAAGGCAACGAAGGCAATAGCGTTACAGCACAGAAGCGAGCCTGCAACACGGCCACCTGCGTGACTCATCGCTTGGCAGACTTCCTGAGCCGGTCGGGGGGCATGGGCAACAGTAACTTTGTCCCCACCAATGTGGGCTCCAAGGCTTTCGGCCGGCGGAGGAGAAACACCCAGATGTGAACATTCCGACAACCTTTAGGGATACGAGGTTGATCCTTCTGAACGCGATGACATCAGAACATATCTGGgggaaaacaacaaaacaaacaaagagAAAAAACACACTGGCCCCTTCATCCACTCCACCACATCTACAGAAATAAACCCCTTCCGATATTAGGACTCCTCCTCTCAATACCATAATGTTATGAAACTTTAATTTAGCTTTTGGCAAACCAGAGAAAAAAAGGGGGAGAATGACAGCAACCTCCATTATGTACATTGACAGCTGAATCCCCAAATCCCAAAGAAAATTTACagattcctttttttttttattacatgaAATTCATTTAAAATGAATTGGAAAAAAGCACCAGtgcttatttattattatttattctgTCTATAGAGCACATTTGTACCATGTGAACCATTCTCCCCGTCACTCATCCCTCCCTGTCCCCACCGGCACCTGTTTGCTGTGCTGTGCCCTGCAGGGATCGACATTAAAGATCAGCCTTCCCTAGGCTCCCTCACAACGGCTGTGTCTTGTGCCTTGATGTAAAACACTTTACATCACATGACTGTATAGTATGTATCAAGATTATAAGAagaccatgaagagaatgacaccGGAC

Function

NR:

description
PREDICTED: calcitonin related peptide isoform X2

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990280.1 False 1228 mRNA 0.44 5 57244759 57250155
XM_036990282.1 False 1225 mRNA 0.44 5 57244759 57250155
XM_036990272.1 False 1593 mRNA 0.42 4 57245938 57249454
XM_036990288.1 False 1389 mRNA 0.40 3 57245938 57250141
NM_001124214.1 False 921 mRNA 0.43 4 57246461 57250104
TU185975 False 1555 TUCP 0.43 5 57244381 57250107
TU185976 True 1101 TUCP 0.45 5 57244835 57250107

Neighbor

gene id symbol gene type direction distance location
LOC110492288 LOC106561064 coding downstream 9508 57152918 ~ 57235251 (-)
zgc:113516 eki1 coding downstream 126465 57048311 ~ 57118294 (-)
LOC118941077 NA coding downstream 207978 57034436 ~ 57039319 (-)
LOC118941078 NA coding downstream 272973 56968148 ~ 56971786 (-)
LOC110492408 smap coding downstream 405938 56835810 ~ 56838821 (-)
ric3b ric3 coding upstream 52605 57302760 ~ 57310851 (-)
c2h11orf16 cssa10h11orf16 coding upstream 81996 57332151 ~ 57340310 (-)
LOC110492469 NA coding upstream 345795 57583975 ~ 57601508 (-)
LOC110492538 LOC106561048 coding upstream 547624 57797779 ~ 57886941 (-)
dusp8a LOC106561046 coding upstream 677968 57928123 ~ 57994689 (-)
G162898 NA non-coding downstream 2748 57241759 ~ 57242011 (-)
G162816 NA non-coding downstream 167338 57075330 ~ 57077421 (-)
G162792 NA non-coding downstream 215943 57027999 ~ 57028816 (-)
G162791 NA non-coding downstream 216984 57027285 ~ 57027775 (-)
G163113 NA non-coding upstream 3992 57254147 ~ 57256689 (-)
G163115 NA non-coding upstream 10518 57260673 ~ 57260883 (-)
G163127 NA non-coding upstream 28005 57278160 ~ 57278395 (-)
G163130 NA non-coding upstream 33305 57283460 ~ 57283742 (-)
G163131 NA non-coding upstream 33672 57283827 ~ 57284038 (-)
G162897 NA other downstream 3387 57240279 ~ 57241372 (-)
G162745 NA other downstream 127609 57114567 ~ 57117150 (-)
G162657 NA other downstream 414183 56827296 ~ 56830576 (-)
G161823 NA other downstream 942664 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 1301194 55935649 ~ 56006747 (-)
G163839 LOC106561050 other upstream 526314 57776469 ~ 57789383 (-)
G164003 NA other upstream 861186 58111341 ~ 58118221 (-)
LOC110492612 LOC106561041 other upstream 879254 58118987 ~ 58200644 (-)

Expression


Co-expression Network