LOC110492386 (LOC106561075)


Basic Information

Item Value
gene id LOC110492386
gene name LOC106561075
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57430187 ~ 57432107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566659.2
AGACTAATAGGTAACTCTATAGCCTTGAAAAAGACACCTAGCCAACTGGATAGATTGAATGTATGCAACTGGGAGCCATTGGGATACATACTACTCTTTTTCCTCACAACCTCCCGGTGAAGTAAAATTGTTTTGAGACTGAGGTTCTAGCCAATATGAAAGTGGCTCTTCAAACCACCATCTGCTTGTGTGTTCTAGCCACAATTTTACCTCTGGTGAAAGGCACCAAAGTTGGCCTCAACTCCAATTTGAAAAAGAGATTTAGAGGCTGGCTACCGAGTCGCTTGAGAGCAGCTCTCCACAGCAGCTCTGCCTTAGACTCAGGGATCCTCAGTGGaccagggcagagagaggagacagactccTCTGTATTTAATTCCAGGTCCAGAAGATCCATTGTGACCTCAGTGAAAAGACCTGGCTGTTCTCTGGGAACATGCACCCTGCAAAACCTGGTCCATCGGCTGCACATCCTCAACAACAGGTTAAAGGTCAACAGAGCCCCGGAGGATAAGATCAGCTCGCAGGGTTACGGTCGCCGCCGCCGCAGGTCTCCCACAGCTCCATGCTTTGCTAACTCTCCAAGCGGGGAGATTGAGATTGGGCTGGAGCAGCGAGAGCCGCTAAGGAATCCATCTACAGGCCACCCTGTTCAGACAAACTTGAGTCAGGCAGAGAAGAGGAGTGTCAATCTACTGAACGCCAGGTGCTTTTTTTGGCTGGCTGAGATACTGCTGAGGTCCTATTCCTGACCATTCCCTTCCTGTGTGGGGGAAAGGATGGACATAGTCAATGGAGTAGGAAATGAATTTCATGCCACTGTGGATGAAAGAAAGCAGTGAAAGAGGGAAGCGATAAGAAGTGTCTGGATTTTTTTCAGTCCAACATTTCTAGTGTTAATTCAGGCCATAAATTAACACTCTTTGGTGTAAAACACCAAGTGTTGATTTTAATAGCCAGAGTTAAACCAAAACGACGCCCATTATTATCATATTTCctagcatgctctattgcaggttcattttttattgtttcaatagctatgtttttgcatgtacattaattaattaatcttatgcttctcaaatataaataacattttttctaa
>XM_036951419.1
AGACTAATAGGTAACTCTATAGCCTTGAAAAAGACACCTAGCCAACTGGATAGATTGAATGTATGCAACTGGGAGCCATTGGGATACATACTACTCTTTTTCCTCACAACCTCCCGGTGAAGTAAAATTGTTTTGAGACTGAGCTATTACATTAGGCAAAATGTAACCCTGCAATAAAGGAATGACCAGGGGCTGGAGGGAACCTGCCTTTTGGACCCTCTTATGTTCTAGCCAATATGAAAGTGGCTCTTCAAACCACCATCTGCTTGTGTGTTCTAGCCACAATTTTACCTCTGGTGAAAGGCACCAAAGTTGGCCTCAACTCCAATTTGAAAAAGAGATTTAGAGGCTGGCTACCGAGTCGCTTGAGAGCAGCTCTCCACAGCAGCTCTGCCTTAGACTCAGGGATCCTCAGTGGaccagggcagagagaggagacagactccTCTGTATTTAATTCCAGGTCCAGAAGATCCATTGTGACCTCAGTGAAAAGACCTGGCTGTTCTCTGGGAACATGCACCCTGCAAAACCTGGTCCATCGGCTGCACATCCTCAACAACAGGTTAAAGGTCAACAGAGCCCCGGAGGATAAGATCAGCTCGCAGGGTTACGGTCGCCGCCGCCGCAGGTCTCCCACAGCTCCATGCTTTGCTAACTCTCCAAGCGGGGAGATTGAGATTGGGCTGGAGCAGCGAGAGCCGCTAAGGAATCCATCTACAGGCCACCCTGTTCAGACAAACTTGAGTCAGGCAGAGAAGAGGAGTGTCAATCTACTGAACGCCAGGTGCTTTTTTTGGCTGGCTGAGATACTGCTGAGGTCCTATTCCTGACCATTCCCTTCCTGTGTGGGGGAAAGGATGGACATAGTCAATGGAGTAGGAAATGAATTTCATGCCACTGTGGATGAAAGAAAGCAGTGAAAGAGGGAAGCGATAAGAAGTGTCTGGATTTTTTTCAGTCCAACATTTCTAGTGTTAATTCAGGCCATAAATTAACACTCTTTGGTGTAAAACACCAAGTGTTGATTTTAATAGCCAGAGTTAAACCAAAACGACGCCCATTATTATCATATTTCctagcatgctctattgcaggttcattttttattgtttcaatagctatgtttttgcatgtacattaattaattaatcttatgcttctcaaatataaataacattttttctaa

Function

NR:

description
ADM-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566659.2 False 1108 mRNA 0.45 4 57430187 57432107
XM_036951419.1 True 1189 mRNA 0.45 5 57430187 57432107

Neighbor

gene id symbol gene type direction distance location
swap70b LOC106561063 coding upstream 32001 57371576 ~ 57398186 (+)
LOC110492278 wee1 coding upstream 61324 57346860 ~ 57368863 (+)
akip1 bca3 coding upstream 98200 57330396 ~ 57331987 (+)
rpl27a rpl27a coding upstream 101003 57326328 ~ 57329184 (+)
LOC110492347 LOC106561068 coding downstream 8536 57440643 ~ 57449264 (+)
LOC110492381 LOC106561071 coding downstream 17306 57449413 ~ 57454096 (+)
LOC110492368 LOC106561072 coding downstream 22263 57454370 ~ 57458086 (+)
LOC110492265 dennd5a coding downstream 35001 57467108 ~ 57527083 (+)
LOC110492340 LOC106561069 coding downstream 104840 57536947 ~ 57546176 (+)
G162955 NA non-coding upstream 83698 57346238 ~ 57346489 (+)
G162944 NA non-coding upstream 111507 57318470 ~ 57318680 (+)
G162939 NA non-coding upstream 119356 57310584 ~ 57310831 (+)
G162922 NA non-coding upstream 152172 57277803 ~ 57278015 (+)
G162299 NA non-coding upstream 304743 57125145 ~ 57125444 (+)
G163047 NA non-coding downstream 98843 57530950 ~ 57531175 (+)
G163048 NA non-coding downstream 99842 57531949 ~ 57532168 (+)
G163049 NA non-coding downstream 101841 57533948 ~ 57534243 (+)
G163352 NA non-coding downstream 229845 57661952 ~ 57664441 (+)
G162130 NA other upstream 376545 57048314 ~ 57053642 (+)
G161687 NA other upstream 1177589 56245044 ~ 56252598 (+)
G160569 NA other upstream 1482942 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2701327 54728296 ~ 54728860 (+)
G159415 NA other upstream 3076799 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 496043 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 783570 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2513601 59945708 ~ 59953165 (+)
G166878 NA other downstream 3083525 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3419325 60851417 ~ 60866455 (+)

Expression


Co-expression Network