LOC110492347 (LOC106561068)


Basic Information

Item Value
gene id LOC110492347
gene name LOC106561068
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57440643 ~ 57449264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951389.1
AGGTTTATGTTTGCCTGTTGCACAAAAACTTCTGATTTAATAAAGTAAATAAGTAAATAAGTAGCTAAAtgattaaaacattttaaaacatataGAAATCTGATCATAACAAAATTGGACAGTTCTCAAAATATTCTACCATACCGGAAATGCACCTTCCCAAACATTGTTGTGTAGCTAGCGTTAGCCTAGCTACTTGCCTTGAGTGGGGCTCTGTCATGAATGAAGTCGAAGCCTTATTCCATCAGAAGGAAACTTGTAAACTGTCTGAGGCAAGGCTGTTTCACTTTCAACTATGTGGCCTGAGAAGTCAGGCCCTGGATGCTCTCATCAGTAGTGCTGAAGATTGGACACAATGGCACTCTAAAGGACACTAACAAAAAGGCAGCATGTCTTCAGGTCATCGGCTGCGAGATGTAGAGCAACAGCACCCCCTGCTGGACAGGGAGGAGGCTGCAGCGGGTTCCGCAGTAGGGGAGGCGGAACGGGTGTGGTTCATCCAGGACGGCTGTGGCATGGTCTGTGCCTTCATCACCTGGTTCCTGGTGCTCTACGCCGACTTTGTGGTCACCTTTGTCATGCTGCTGCCCTCCAAGAGCTTCTGGTACGCTGTGGTCAACGGCGTGGTCTTCAACTGCCTGGCCGTGCTGGCACTCAGCTCGCACCTGCGCACCATGCTCACCGACCCGGGAGCTGTGCCCAAAGGCAACGCCACCAAGAAATACATGGAGAGCCTGAAGCTGAAACCAGGAGAAGTCATCTATAAGTGTCCCAAATGCTGCAGCATCAAACCTGAGAGAGCCCACCACTGCAGTATTTGCAAGCGCTGCATCCGTAAGATGGATCACCACTGTCCATGGGTAAACAACTGTGTCGGAGAGAACAACCAGCGCTTCTTTGTCCTCTTCACTATGTATATAGCGATGATCTCCACCCACGCTCTCACTCTGAGTGGGTACCAGTTCGTAACCTGTGTCAAAGTCCAGTGGAGTGAGTGCAGTGACTTTTCCCCTCCGGTGACGGTGATGCTGATGATCTTCCTCTGCCTTGAGGGCCTCCTCTTCCTCAGCTTCACAGCTATCATGTTTGGCACTCAGGTCCACTCCATCTGCAATGATGAGACAGTGAGGAGATTAACAGTATATGCCACTTAGCAGACATTTTttaaatctttaaaaaaaaatcctaagAGATTGAGCGTCTGAAGAATGAGAAGCCCACTTGGGAGAGGCAAGTTCGCTGGGAGGGCATGAGGAGCGTGTTTGGTGGCCAGCCGTCACTGTTGTGGATCAACCCGTTTGCCGGTCTCCGACTGCGCCG
>XR_005037332.1
AGGTTTATGTTTGCCTGTTGCACAAAAACTTCTGATTTAATAAAGTAAATAAGTAAATAAGTAGCTAAAtgattaaaacattttaaaacatataGAAATCTGATCATAACAAAATTGGACAGTTCTCAAAATATTCTACCATACCGGAAATGCACCTTCCCAAACATTGTTGTGTAGCTAGCGTTAGCCTAGCTACTTGCCTTGAGTGGGGCTCTGTCATGAATGAAGTCGAAGCCTTATTCCATCAGAAGGAAACTTGTAAACTGTCTGAGGCAAGGCTGTTTCACTTTCAACTATGTGGCCTGAGAAGTCAGGCCCTGGATGCTCTCATCAGTAGTGCTGAAGATTGGACACAATGGCACTCTAAAGGACACTAACAAAAAGGCAGCATGTCTTCAGGTCATCGGCTGCGAGATGTAGAGCAACAGCACCCCCTGCTGGACAGGGAGGAGGCTGCAGCGGGTTCCGCAGTAGGGGAGGCGGAACGGGTGTGGTTCATCCAGGACGGCTGTGGCATGGTCTGTGCCTTCATCACCTGGTTCCTGGTGCTCTACGCCGACTTTGTGGTCACCTTTGTCATGCTGCTGCCCTCCAAGAGCTTCTGGTACGCTGTGGTCAACGGCGTGGTCTTCAACTGCCTGGCCGTGCTGGCACTCAGCTCGCACCTGCGCACCATGCTCACCGACCCGGGAGCTGTGCCCAAAGGCAACGCCACCAAGAAATACATGGAGAGCCTGAAGCTGAAACCAGGAGAAGTCATCTATAAGTGTCCCAAATGCTGCAGCATCAAACCTGAGAGAGCCCACCACTGCAGTATTTGCAAGCGCTGCATCCGTAAGATGGATCACCACTGTCCATGGGTAAACAACTGTGTCGGAGAGAACAACCAGCGCTTCTTTGTCCTCTTCACTATGTATATAGCGATGATCTCCACCCACGCTCTCACTCTGAGTGGGTACCAGTTCGTAACCTGTGTCAAAGTCCAGTGGAGTGAGTGCAGTGACTTTTCCCCTCCGGTGACGGTGATGCTGATGATCTTCCTCTGCCTTGAGGGCCTCCTCTTCCTCAGCTTCACAGCTATCATGTTTGGCACTCAGGTCCACTCCATCTGCAATGATGAGACAGTGAGGAGATTAACAGTATATGCCACTTAGCAGACATTTTttaaatctttaaaaaaaaatcctaagTAAGTTTCTGCACGGTGATTGCCTACATTTTCAATTTGTGTTATGTGATTCTTGTGGGAATTGAACACACAACCTCAGATATACAATGTAGATTAGATGGAGTCTTGTGCATGATTAAGAATTGTTTCCATGTTATACATTACATTCTCAGGTCCACTCCATCTGCAACAAGACGgAGATTGAGCGTCTGAAGAATGAGAAGCCCACTTGGGAGAGGCAAGTTCGCTGGGAGGGCATGAGGAGCGTGTTTGGTGGCCAGCCGTCACTGTTGTGGATCAACCCGTTTGCCGGTCTCCGACTGCGCCGGCT
>XM_036951386.1
CAAAATATTCTACCATACCGGAAATGCACCTTCCCAAACATTGTTGTGTAGCTAGCGTTAGCCTAGCTACTTGCCTTGAGTGGGGCTCTGTCATGAATGAAGTCGAAGCCTTATTCCATCAGAAGGAAACTTGTAAACTGTCTGAGGCAAGGCTGTTTCACTTTCAACTATGTGGCCTGAGAAGTCAGGCCCTGGATGCTCTCATCAGTAGTGCTGAAGATTGGACACAATGGCACTCTAAAGGACACTAACAAAAAGGCAGCATGTCTTCAGGTCATCGGCTGCGAGATGTAGAGCAACAGCACCCCCTGCTGGACAGGGAGGAGGCTGCAGCGGGTTCCGCAGTAGGGGAGGCGGAACGGGTGTGGTTCATCCAGGACGGCTGTGGCATGGTCTGTGCCTTCATCACCTGGTTCCTGGTGCTCTACGCCGACTTTGTGGTCACCTTTGTCATGCTGCTGCCCTCCAAGAGCTTCTGGTACGCTGTGGTCAACGGCGTGGTCTTCAACTGCCTGGCCGTGCTGGCACTCAGCTCGCACCTGCGCACCATGCTCACCGACCCGGGAGCTGTGCCCAAAGGCAACGCCACCAAGAAATACATGGAGAGCCTGAAGCTGAAACCAGGAGAAGTCATCTATAAGTGTCCCAAATGCTGCAGCATCAAACCTGAGAGAGCCCACCACTGCAGTATTTGCAAGCGCTGCATCCGTAAGATGGATCACCACTGTCCATGGGTAAACAACTGTGTCGGAGAGAACAACCAGCGCTTCTTTGTCCTCTTCACTATGTATATAGCGATGATCTCCACCCACGCTCTCACTCTGAGTGGGTACCAGTTCGTAACCTGTGTCAAAGTCCAGTGGAGTGAGTGCAGTGACTTTTCCCCTCCGGTGACGGTGATGCTGATGATCTTCCTCTGCCTTGAGGGCCTCCTCTTCCTCAGCTTCACAGCTATCATGTTTGGCACTCAGGTCCACTCCATCTGCAATGATGAGACAgAGATTGAGCGTCTGAAGAATGAGAAGCCCACTTGGGAGAGGCAAGTTCGCTGGGAGGGCATGAGGAGCGTGTTTGGTGGCCAGCCGTCACTGTTGTGGATCAACCCGTTTGCCGGTCTCCGACTGCGCCGGCTACTCACCACTAGCTCCAGGAAAGCCGGCGCCGAGTTCTCAGTCTGACCTCTCACATTATGAGCAGCTTCGTTAAGAAACTGTCTGGAACAATCTTTGGAACCGGTCTCTGACACCAGGGTCCTGTTCATTTAGGCATCAAACGGAAGAAAACGgattgaaacaggaaagggactatgcggacttgtccaataagaaacgtaCATTCTTGTTTTATTTTTGCTAAATATTTTCCAttgcgtgccctaatgaacacgagcCCGGCTACCAGGAAGACTCAAGTTCTATACAACCGCATGGACAATGGTGCTTCTGAACGTCACGTCTCCCCGTAGCTGACATGGAGCAGGAATCAAAAGATCAAGAGACCCATCGAAAACTGTTGAAAGATCAAATGAAAGTGCGCTGTCGTCCTAAAACGGACTGAAACACAACATACTACACAGTAAACATTTCCTAAATTGCCGCCTAAAGGGAGGATCCACTAGTATCTCAGAGGACTGTTCTGTTGTTTAGTTATTGACTTCCTTTTAAAGACACTAGTTGTTTTCTGCTCTTCCTcactcctggggggggggggggggcgtgagtAAAGCCTAATTTATACCTCACGATACATACAAGAACTCAATTAGCTACTCAAAATGACAATCTTGTACTTGTATCGAGTTACAAATTGCTGGACCTGCACACGTCTGCGTATTTTGGCTACGGAACTATGTAGGGTCGCCGTTTTACGTAGCTAATTGGAGATTTTGCATCCTGTATGTAGGGTATAAATTAGGTTTAAGTGTCCTTCCCTGGCCATAGATAGCTGCACCTCTGGAAAAACAATGCGCTGGAATTGGTGTTAACCACTACTATAACCATATCatacttttttttaatgaaaacagTATATTGCTGGATATATTGCTGGTGAATCCTGTTGTTTTTGCataccaaaaaaaaagtgttttttacCACTTGTAGGAGTTCGATGAGTTGGGGTGGGGAATGAGGCATATGAAATATGAATAATTAATGCCAGCAAGATGGTAGAGAACTACTATAATCAGCAGTTTGGATTCTGCATGAGGCAATCACGTCAACTTTTACTAATGTGTCTGACATTTGCTGTGAAGTTGACCATTTTTAAAGGCATAGGAACTGGATTCATTAGCCAAAAGTTAGCATCATGGTTATTTTTAATAGGTAGTAAGAATGCTATGATAATTTAACTGTACTCTAATTTAAAGGTAAACTCAGTGTTGCACGACGTTAACAGCAATATTGGGCCCatttccgcaacaactaagagcgttgaagcgcGGGGCTAAActtttctgttgttgtggtgcCGTCGTAGCTACCACTTTAGCAGCGTGAAGCACACCCGTGCCTATTGGCAGAtactctgtgtgtctctgagaGCCAAGTCTTTCATCTCAGTGTCTTCGGTGCTGGTCGTGGCAACGTCATAacgctgagtctacctttttttttttttaaatggtaatTTGTGTGTAATGGACTATATGACTCCAGCAGAGTCGATGATTATCTCAAACAGTCAAATGCTTACATGGCACTGTATGGTATTTACTTTATCAAGTcgaaatacagtactgtacacaaCCTTATGAGCTTTCACACAAAAGTATGTGCATGTGCTTCCCTCAAGTACTCCATGCTATACACTCCTATGTTATACTCTCCTATGTATACAGGGGAAGTTCCTATCATACTGATCTTAAAATAATTCTGATGAACCGTTATGATTTTTTTCATTTGACATTTGATGGACTGGATAAAGTAATGTAGGAGGACTTGGCTGTTTTTTTAAAATGCTCTTGTTATGAgattatacagtatgttatgtaCTTCTGTTTTGAAGCCTTTCATGCTAACTTTTTCCCTGGCTCCCGTTTAAATGAACTTCATTTCTA
>XM_036951388.1
GCGTTAGCCTAGCTACTTGCCTTGAGTGGGGCTCTGTCATGAATGAAGTCGAAGCCTTATTCCATCAGAAGGAAACTTGTAAACTGTCTGAGGGCTGTTTCACTTTCAACTATGTGGCCTGAGAAGTCAGGCCCTGGATGCTCTCATCAGTAGTGCTGAAGATTGGACACAATGGCACTCTAAAGGACACTAACAAAAAGGCAGCATGTCTTCAGGTCATCGGCTGCGAGATGTAGAGCAACAGCACCCCCTGCTGGACAGGGAGGAGGCTGCAGCGGGTTCCGCAGTAGGGGAGGCGGAACGGGTGTGGTTCATCCAGGACGGCTGTGGCATGGTCTGTGCCTTCATCACCTGGTTCCTGGTGCTCTACGCCGACTTTGTGGTCACCTTTGTCATGCTGCTGCCCTCCAAGAGCTTCTGGTACGCTGTGGTCAACGGCGTGGTCTTCAACTGCCTGGCCGTGCTGGCACTCAGCTCGCACCTGCGCACCATGCTCACCGACCCGGGAGCTGTGCCCAAAGGCAACGCCACCAAGAAATACATGGAGAGCCTGAAGCTGAAACCAGGAGAAGTCATCTATAAGTGTCCCAAATGCTGCAGCATCAAACCTGAGAGAGCCCACCACTGCAGTATTTGCAAGCGCTGCATCCGTAAGATGGATCACCACTGTCCATGGGTAAACAACTGTGTCGGAGAGAACAACCAGCGCTTCTTTGTCCTCTTCACTATGTATATAGCGATGATCTCCACCCACGCTCTCACTCTGAGTGGGTACCAGTTCGTAACCTGTGTCAAAGTCCAGTGGAGTGAGTGCAGTGACTTTTCCCCTCCGGTGACGGTGATGCTGATGATCTTCCTCTGCCTTGAGGGCCTCCTCTTCCTCAGCTTCACAGCTATCATGTTTGGCACTCAGGTCCACTCCATCTGCAATGATGAGACAgAGATTGAGCGTCTGAAGAATGAGAAGCCCACTTGGGAGAGGCAAGTTCGCTGGGAGGGCATGAGGAGCGTGTTTGGTGGCCAGCCGTCACTGTTGTGGATCAACCCGTTTGCCGGTCTCCGACTGCGCCGGCTACTCACCACTAGCTCCAGGAAAGCCGGCGCCGAGTTCTCAGTCTGACCTCTCACATTATGAGCAGCTTCGTTAAGAAACTGTCTGGAACAATCTTTGGAACCGGTCTCTGACACCAGGGTCCTGTTCATTTAGGCATCAAACGGAAGAAAACGgattgaaacaggaaagggactatgcggacttgtccaataagaaacgtaCATTCTTGTTTTATTTTTGCTAAATATTTTCCAttgcgtgccctaatgaacacgagcCCGGCTACCAGGAAGACTCAAGTTCTATACAACCGCATGGACAATGGTGCTTCTGAACGTCACGTCTCCCCGTAGCTGACATGGAGCAGGAATCAAAAGATCAAGAGACCCATCGAAAACTGTTGAAAGATCAAATGAAAGTGCGCTGTCGTCCTAAAACGGACTGAAACACAACATACTACACAGTAAACATTTCCTAAATTGCCGCCTAAAGGGAGGATCCACTAGTATCTCAGAGGACTGTTCTGTTGTTTAGTTATTGACTTCCTTTTAAAGACACTAGTTGTTTTCTGCTCTTCCTcactcctggggggggggggggggcgtgagtAAAGCCTAATTTATACCTCACGATACATACAAGAACTCAATTAGCTACTCAAAATGACAATCTTGTACTTGTATCGAGTTACAAATTGCTGGACCTGCACACGTCTGCGTATTTTGGCTACGGAACTATGTAGGGTCGCCGTTTTACGTAGCTAATTGGAGATTTTGCATCCTGTATGTAGGGTATAAATTAGGTTTAAGTGTCCTTCCCTGGCCATAGATAGCTGCACCTCTGGAAAAACAATGCGCTGGAATTGGTGTTAACCACTACTATAACCATATCatacttttttttaatgaaaacagTATATTGCTGGATATATTGCTGGTGAATCCTGTTGTTTTTGCataccaaaaaaaaagtgttttttacCACTTGTAGGAGTTCGATGAGTTGGGGTGGGGAATGAGGCATATGAAATATGAATAATTAATGCCAGCAAGATGGTAGAGAACTACTATAATCAGCAGTTTGGATTCTGCATGAGGCAATCACGTCAACTTTTACTAATGTGTCTGACATTTGCTGTGAAGTTGACCATTTTTAAAGGCATAGGAACTGGATTCATTAGCCAAAAGTTAGCATCATGGTTATTTTTAATAGGTAGTAAGAATGCTATGATAATTTAACTGTACTCTAATTTAAAGGTAAACTCAGTGTTGCACGACGTTAACAGCAATATTGGGCCCatttccgcaacaactaagagcgttgaagcgcGGGGCTAAActtttctgttgttgtggtgcCGTCGTAGCTACCACTTTAGCAGCGTGAAGCACACCCGTGCCTATTGGCAGAtactctgtgtgtctctgagaGCCAAGTCTTTCATCTCAGTGTCTTCGGTGCTGGTCGTGGCAACGTCATAacgctgagtctacctttttttttttttaaatggtaatTTGTGTGTAATGGACTATATGACTCCAGCAGAGTCGATGATTATCTCAAACAGTCAAATGCTTACATGGCACTGTATGGTATTTACTTTATCAAGTcgaaatacagtactgtacacaaCCTTATGAGCTTTCACACAAAAGTATGTGCATGTGCTTCCCTCAAGTACTCCATGCTATACACTCCTATGTTATACTCTCCTATGTATACAGGGGAAGTTCCTATCATACTGATCTTAAAATAATTCTGATGAACCGTTATGATTTTTTTCATTTGACATTTGATGGACTGGATAAAGTAATGTAGGAGGACTTGGCTGTTTTTTTAAAATGCTCTTGTTATGAgattatacagtatgttatgtaCTTCTGTTTTGAAGCCTTTCATGCTAACTTTTTCCCTGGCTCCCGTTTAAATGAACTTCATTTCTA

Function

NR:

description
palmitoyltransferase ZDHHC7

GO: NA

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951389.1 False 1320 mRNA 0.50 8 57440643 57447335
XR_005037332.1 False 1499 mRNA 0.48 8 57440643 57447338
XM_036951386.1 False 3058 mRNA 0.45 8 57440769 57449264
XM_036951388.1 True 3000 mRNA 0.46 8 57440823 57449264

Neighbor

gene id symbol gene type direction distance location
LOC110492386 LOC106561075 coding upstream 8536 57430187 ~ 57432107 (+)
swap70b LOC106561063 coding upstream 42457 57371576 ~ 57398186 (+)
LOC110492278 wee1 coding upstream 71780 57346860 ~ 57368863 (+)
akip1 bca3 coding upstream 108656 57330396 ~ 57331987 (+)
LOC118944168 NA coding upstream 112193 57328320 ~ 57328450 (+)
LOC110492381 LOC106561071 coding downstream 149 57449413 ~ 57454096 (+)
LOC110492368 LOC106561072 coding downstream 5106 57454370 ~ 57458086 (+)
LOC110492265 dennd5a coding downstream 17844 57467108 ~ 57527083 (+)
LOC110492340 LOC106561069 coding downstream 87683 57536947 ~ 57546176 (+)
LOC110492398 LOC106561074 coding downstream 101688 57550952 ~ 57556023 (+)
G162955 NA non-coding upstream 94154 57346238 ~ 57346489 (+)
G162944 NA non-coding upstream 121963 57318470 ~ 57318680 (+)
G162939 NA non-coding upstream 129812 57310584 ~ 57310831 (+)
G162922 NA non-coding upstream 162628 57277803 ~ 57278015 (+)
G162299 NA non-coding upstream 315199 57125145 ~ 57125444 (+)
G163047 NA non-coding downstream 81686 57530950 ~ 57531175 (+)
G163048 NA non-coding downstream 82685 57531949 ~ 57532168 (+)
G163049 NA non-coding downstream 84684 57533948 ~ 57534243 (+)
G163352 NA non-coding downstream 212688 57661952 ~ 57664441 (+)
G162130 NA other upstream 387001 57048314 ~ 57053642 (+)
G161687 NA other upstream 1188045 56245044 ~ 56252598 (+)
G160569 NA other upstream 1493398 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2711783 54728296 ~ 54728860 (+)
G159415 NA other upstream 3087255 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 478886 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 766413 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2496444 59945708 ~ 59953165 (+)
G166878 NA other downstream 3066368 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3402168 60851417 ~ 60866455 (+)

Expression


Co-expression Network