LOC110492381 (LOC106561071)


Basic Information

Item Value
gene id LOC110492381
gene name LOC106561071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57449413 ~ 57454096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566646.2
CTGTAGCCCTTTGATGTTGGCAGATCTCTAAGGTGGAAGCAATATAATGGAAGCTTCACCTTTTACACTGCTTATGCCTGTCCAGGCCCTTCAGATCCGCAAACGCTAAAGGGTTATGGCTGAGGGAAAAGGCTAGGGAGGGAACTGGGACCAGCTTAGTCAACGCCATATGTGAAGGGACCTGTATTTTCCCATACCACACAACTCCACCCATCATAGGGAGTAGGATGAAGTTGCCCCTGGACGCTGACCTTGGGCCAGTTTTGCACTTCCCCCACTATTGGTTAGGTGTATAAAGGGGgggggctgatcctagatctatACCTTGGGGAAGCTTCACCCCAGAGCCCCACCTTTTTAGTGAAGCAGACATACAGGTTGTAGTTAATCATTTCTTGTCCCACAAGCCACGACACATCCACACTGGCAGACAGTAGCAACCTGCACCTCATTGCTATAAAAACGTATCCATTCAAGAGGACCAGACATGTTATTTGGGGTATCCTTCATTGTGCTCCTGGCTCTATTGGGTTTGGTGGACCCCCGTCCAGACCTACCAGCGGACAAGGACTTGTTCTGGGGAGCGGACCAGTATGACTTTGCTGTTGTGCTGCGTGCCTCCGGACTGGAGTGCTTCTGGCATTTTGCACACCAAGGGGAGCGCTTCTACTTGACTTTTATGGTCCAGTGGGTGACTGGTGTCGGCAACGACAGACACTTATCCGTCACTGTCAACTCTCCTAAAGGCTTGCTGTTGTCCAAAATTGACGAAGCTACGGGTCAAATCAACTTTGTAGCTGAGGAGACCGGTTTCTATCAAATGTGCTTCAGCAACTTCCACAACCGATTTGGCAGCATGCAGGTCTTCCTCAACTTTGGGGTGTACTATGACAGTTCTGATGACCAACGGAaacagaaggaggaggagaagaaagtcCAAAAAGACCTGAACAACACTCTGTCCATCATCGAGGAGACTTCCCATCGCGTGGAGGGCTACGTCTTCCACATGTTTCGACATTACAACTTTGGCCGCATGCGGAAAGGCGCCGActactacctcctcctctccaactCTAAATACATCACCTGGTGGTCTGCGGTCCAGAGTGTGGTCATCGTCATGGCGGGCTACCTGCAACTCTTCTTCCTCAAGAGGCTCTTCAACACCAGGCCCACTACAGAAGCACCAGAGAGAACTCGCTGCTGAGTCCCTGGGTGCTTTTAGTATTCAGTGCCCTCATGTGCCCTGGTTGGGATGAATTCCATTTGAATTCAGTCAACCAGTAACGACGCCCTCAACAATTTAAGGCCGGGATTCAATCCGATCGCCCCTTTTGGGCtatgcaccttttaaaggcaatgttcctgcatttgtggagactgcattcacggtaaatgctgcatatgttGGCTCAATCTCTAATGACCTTTGAATTTCACGTGCGCTGTTACACGGATCTACCACTGATCGGATGAAATCGCAGCCTTAAATTCCATTACATTGATTGAATTAAAATCAAATTGACCCCGACCCTGTTGTTAATGTAAGTGTTACTAATGGGTTCTGCTCCCTATGTGTCTATGTTGGATTTGATTAAAGTCGCACACCTTTTGACAAATGTTGTCATTCCAGTGCATATATTTGGTGTGGAT

Function

NR:

description
transmembrane emp24 domain-containing protein 6-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20351 TMED6; p24 family protein gamma-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566646.2 True 1656 mRNA 0.49 4 57449413 57454096

Neighbor

gene id symbol gene type direction distance location
LOC110492347 LOC106561068 coding upstream 149 57440643 ~ 57449264 (+)
LOC110492386 LOC106561075 coding upstream 17306 57430187 ~ 57432107 (+)
swap70b LOC106561063 coding upstream 51227 57371576 ~ 57398186 (+)
LOC110492278 wee1 coding upstream 80550 57346860 ~ 57368863 (+)
akip1 bca3 coding upstream 117426 57330396 ~ 57331987 (+)
LOC110492368 LOC106561072 coding downstream 274 57454370 ~ 57458086 (+)
LOC110492265 dennd5a coding downstream 13012 57467108 ~ 57527083 (+)
LOC110492340 LOC106561069 coding downstream 82851 57536947 ~ 57546176 (+)
LOC110492398 LOC106561074 coding downstream 96856 57550952 ~ 57556023 (+)
LOC110492308 LOC106561065 coding downstream 102709 57556805 ~ 57560839 (+)
G162955 NA non-coding upstream 102924 57346238 ~ 57346489 (+)
G162944 NA non-coding upstream 130733 57318470 ~ 57318680 (+)
G162939 NA non-coding upstream 138582 57310584 ~ 57310831 (+)
G162922 NA non-coding upstream 171398 57277803 ~ 57278015 (+)
G162299 NA non-coding upstream 323969 57125145 ~ 57125444 (+)
G163047 NA non-coding downstream 76854 57530950 ~ 57531175 (+)
G163048 NA non-coding downstream 77853 57531949 ~ 57532168 (+)
G163049 NA non-coding downstream 79852 57533948 ~ 57534243 (+)
G163352 NA non-coding downstream 207856 57661952 ~ 57664441 (+)
G162130 NA other upstream 395771 57048314 ~ 57053642 (+)
G161687 NA other upstream 1196815 56245044 ~ 56252598 (+)
G160569 NA other upstream 1502168 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2720553 54728296 ~ 54728860 (+)
G159415 NA other upstream 3096025 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 474054 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 761581 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2491612 59945708 ~ 59953165 (+)
G166878 NA other downstream 3061536 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3397336 60851417 ~ 60866455 (+)

Expression


Co-expression Network