LOC110492368 (LOC106561072)


Basic Information

Item Value
gene id LOC110492368
gene name LOC106561072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57454370 ~ 57458086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566627.2
ACCTCTAGTATACCACTCCCAAACAGTATGAGTTTTGTGAGTGTATGAATGCAGACCATGCATGTTGAGGTGTGGTACTCTGTTCTCGTCATACTCCTTATGGGGCATGGGGGCGGCGGACAAAAGACAGAGCCCCGCTTAGGCCTGAAGGACCACAACCTGTTCCGAGGGTCCGATCGATATGCCTTTGCCATCGTGGTGCCAGCCTCGGGGCTAGAGTGCTTTTGGCACTTTGCACACCAGAGTGGGAACTTCTACCTAACCTACATGgtccaGTGGGTGACAGGACTAGCCAGTGACAACCATCTTTACGTGACCGTCATTTCCCCAGAAGGGGCCCTCATGGCCTCAACAGACGACACCATTGGAGAAATCAACTTCCAAACTGAAGTGACCGGTTTTTATCAGATGTGCTTGGGGAACTATAAGAACCACTTTGGTGGCGTCCGAGTCTTTCTCAACTTCGGTGTGTACTACGAGGGTGCTGAGGAGATGCAGCGAGAGACAAAGGAAGGAGAAAAAGTCCTCAACAACACTCTGTCCAACATTGAGGAGAGTACCAACAAGATACAAGGTCACATTTTACACATGTGGCGGCACTACAACTACGCTCGCATGAGGAGAGGTGCTGACCATTACCTTCTCCTCTTCAACCACAACTACGTCACCTGGTGGTCTGCGGTACAGAGTGTGGTCATCATCATGCCAGTCTACATCATGGTTGCAGAGGAAGCTAATGGCAAGAGTATAGAAAAAAAAACAGCCTCGAGGGACCCCACTTCGAGCCAATGACGAGTCTTTTGGATGTCAAGattttaaatcaaataaatgtcATATTTGCTAGTGGAAAAAA
>XM_021566633.2
CTAGTATACCACTCCCAAACAGTATGAGTTTTGTGAGTGTATGAATGCAGACCATGCATGTTGAGGTGTGGTACTCTGTTCTCGTCATACTCCTTATGGGGCATGGGGGCGGCGGACAAAAGACAGAGCCCCGCTTAGGCCTGAAGGACCACAACCTGTTCCGAGGGTCCGATCGATATGCCTTTGCCATCGTGGTGCCAGCCTCGGGGCTAGAGTGCTTTTGGCACTTTGCACACCAGAGTGGGAACTTCTACCTAACCTACATGgtccaGTGGGTGACAGGACTAGCCAGTGACAACCATCTTTACGTGACCGTCATTTCCCCAGAAGGGGCCCTCATGGCCTCAACAGACGACACCATTGGAGAAATCAACTTCCAAACTGAAGTGACCGGTTTTTATCAGATGTGCTTGGGGAACTATAAGAACCACTTTGGTGGCGTCCGAGTCTTTCTCAACTTCGGTGTGTACTACGAGGGTGCTGAGGAGATGCAGCGAGAGACAAAGGAAGGAGAAAAAGTCCTCAACAACACTCTGTCCAACATTGAGGAGAGTACCAACAAGATACAAGGTCACATTTTACACATGTGGCGGCACTACAACTACGCTCGCATGAGGAGAGGTGCTGACCATTACCTTCTCCTCTTCAACCACAACTACGTCACCTGGTGGTCTGCGGTACAGAGTGTGGTCATCATCATGGTGGGCTACCTGCAGCTCTTCTTCCTCAAGAGGCTTTTCCACACAGACACCCATAGACCCCGCTGTTGATGAAGGATGGCTCGTAAAATGTCACTCACTGCTTGTG

Function

NR:

description
transmembrane emp24 domain-containing protein 6-like isoform X2

GO: NA

KEGG:

id description
K20351 TMED6; p24 family protein gamma-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566627.2 False 853 mRNA 0.49 5 57454370 57458086
XM_021566633.2 True 807 mRNA 0.51 4 57454374 57456316

Neighbor

gene id symbol gene type direction distance location
LOC110492381 LOC106561071 coding upstream 274 57449413 ~ 57454096 (+)
LOC110492347 LOC106561068 coding upstream 5106 57440643 ~ 57449264 (+)
LOC110492386 LOC106561075 coding upstream 22263 57430187 ~ 57432107 (+)
swap70b LOC106561063 coding upstream 56184 57371576 ~ 57398186 (+)
LOC110492278 wee1 coding upstream 85507 57346860 ~ 57368863 (+)
LOC110492265 dennd5a coding downstream 9022 57467108 ~ 57527083 (+)
LOC110492340 LOC106561069 coding downstream 78861 57536947 ~ 57546176 (+)
LOC110492398 LOC106561074 coding downstream 92866 57550952 ~ 57556023 (+)
LOC110492308 LOC106561065 coding downstream 98719 57556805 ~ 57560839 (+)
LOC110492452 ccdc34 coding downstream 116162 57574248 ~ 57579830 (+)
G162955 NA non-coding upstream 107881 57346238 ~ 57346489 (+)
G162944 NA non-coding upstream 135690 57318470 ~ 57318680 (+)
G162939 NA non-coding upstream 143539 57310584 ~ 57310831 (+)
G162922 NA non-coding upstream 176355 57277803 ~ 57278015 (+)
G162299 NA non-coding upstream 328926 57125145 ~ 57125444 (+)
G163047 NA non-coding downstream 72864 57530950 ~ 57531175 (+)
G163048 NA non-coding downstream 73863 57531949 ~ 57532168 (+)
G163049 NA non-coding downstream 75862 57533948 ~ 57534243 (+)
G163352 NA non-coding downstream 203866 57661952 ~ 57664441 (+)
G162130 NA other upstream 400728 57048314 ~ 57053642 (+)
G161687 NA other upstream 1201772 56245044 ~ 56252598 (+)
G160569 NA other upstream 1507125 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2725510 54728296 ~ 54728860 (+)
G159415 NA other upstream 3100982 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 470064 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 757591 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2487622 59945708 ~ 59953165 (+)
G166878 NA other downstream 3057546 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3393346 60851417 ~ 60866455 (+)

Expression


Co-expression Network