LOC110492398 (LOC106561074)


Basic Information

Item Value
gene id LOC110492398
gene name LOC106561074
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57550952 ~ 57556023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566693.2
TTCCTTTCCTATGTCACATGATCAACATTCCCACAACACGGAAGTGCGGTGCAGCGTATCGTTCTGTTTCTCCAGAAATAAATGTTTCTCTTTGCCACAGACTGCTAAATTTCATCTAGCTCCAATTATGAAAATGAATGTTAGTAGCTTAATGTAAGAGTGTATATTGCCATTAAAGTGTTAAAGAAAACTCACGGATATAACGAGTTTGGGACATATCTAATCTGTTGATGGTAAATGCTTTCCATTAATCATCAGCGCCATGGAACCCACAGCTTCTGGAATGTTCTGTAACAGAATGCTTAGCATGGTAAACTCTGAGGATGTCAACGCCATCATCCAAGCCCAGAGGCACATgctggacCGCTTTGAGAAGACCAATGAGATGCTGATCAACTTCAATGGACTTTCCAACGTGCGGCTGCAGCAGATGAACGAACACTTCCTGCTTCACACGCGCACCCTGGTGGAGATGAAGAAGGACTTGGACAGCATCTTTAGGAGAATCAGGACTTTAAAGGGCAAGATCGCCAAGCAGTACCCAGAGGCCTTCAGAAACGCCCACGAGTCGCCGGTCCTGGAGGACGACGAGTTTGATCCCATCCCGCCCAGTGTCGCCACGATGATCACCGCCACCATGTCGGGGCAGAGCACCGAGTCATGTGACACGAGCCCCGACGTAATTTCCCCGAATGTAAGCCGGTGTTCCGAAGGCCTCTCCCAGGAGCAGGCCGACACGCCCACCTCTGACCAAGGCCTGCCTAGCCCTGAAACGGACATGCTGAGGGACGAGGGCCCGGACTCAGTACCTGCAGAGTAGAGCCTTCATAACCCAGGCCTAGAGCTCTACTCAGTACCTGCAGAGTAGAGCCTCCGTAACCCAGGCCTAGAGCGCTACTCAGTACCTGCAGAGTAGAGCCTCCGTAACCCAGGCCTAGAGCTCTACTCAGTACCTGCAGAGTAGTGCCTTCATAACCCAGGCTTAGAGTTCTACTCAGTACCCATAGATTAGATAGAAGCAGCAGGAGGTCAATGTGATTGATTTGGCTTTGAGTTTTGGCCAGTTATCTGGTTTGTCGGGTTTGAATCAGTAGCTGATTTGATGGTCAGGATTTAAACCAGCACACTGACTGCTGTTCACTTGTAAACGCCAAGATTGTGTCCAAAGATCCCTTTCGTTAGACACGCTTGTCCATCACTCGCCACTAACAATGAAGAAGATACTTGAATGTGTGTTGTGGTTGTGAAGAACTGAATCCTTCATTACTAACCACAGGAGGACTGCACCCAGCTAGTCATTTGTTTGTGTGCACAGGAGTGGCTCTCTTTAATAATGGTTGAGCTTGGAAATATGCACTCATTTAAAGAGGTAGTGAGCTTTGTTGGTCATGGGTAAGCCTATTGGAATCCAGCTAATTGCAATAGTACAGCCTACCAAAATATGTTTCAATTGTTTTAGTGACACACCTCCTGTTATTTACCCTATTAAAACTAGAGCCTGACCGATAAGGTTATTTGGGTCCGATTTTTGGGGGGACAAAACTTACCGATACAGATATCTGCTGTTATACTGTTTTACAGCAGGGAAATGAAAGTGTCATTTTCCACACTGAATTCTCCTAAATTGCCATTCAGAAGAGCAGTTGTCCCAGAAATATGCTGCTAATGTTGATTTCTTACATTGTGACATAATGAGAATGGCCGCAAACATTCAGATCAGCTTGAGAtacccatcccccccccccccccccccccatcctatttattgaatattagTTATCGTGAAATTATCGGCTGATACCGATAAAGCGTTAAAATGCCAATATCAGCAGATCATTTCGGCGACGCAATATATCGGTCAGCTTCTAATTGAAACCTCACCACCACagactttttttcttcttttttttaacatGCAAAATGTGTGAGTTGCTGCATGGAAGAGTTCAGTATTATTGTTTTCCATTGTTTCTCGGATATCCATTTTATTTTGTTGGGATGACTTGAGCTCGAGTACTAGGCTACACTGTAAATTACCCCTCGGTGAAGTGGCTAACTTAAGCATTCTAAGTCTTTATCTGTATCATGATTACGATAAATGTTACGCAACAACTTGAA
>XM_021566686.2
TCCTTTCCTATGTCACATGATCAACATTCCCACAACACGGAAGTGCGGTGCAGCGTATCGTTCTGTTTCTCCAGAAATAAATGTTTCTCTTTGCCACAGACTGCTAAATTTCATCTAGCTCCAATTATGAAAATGAATGTTAGTAGCTTAATGTAAGAGTGTATATTGCCATTAAAGTGTTAAAGAAAACTCACGGATATAACGAGTTTGGGACATATCTAATCCGCCATGGAACCCACAGCTTCTGGAATGTTCTGTAACAGAATGCTTAGCATGGTAAACTCTGAGGATGTCAACGCCATCATCCAAGCCCAGAGGCACATgctggacCGCTTTGAGAAGACCAATGAGATGCTGATCAACTTCAATGGACTTTCCAACGTGCGGCTGCAGCAGATGAACGAACACTTCCTGCTTCACACGCGCACCCTGGTGGAGATGAAGAAGGACTTGGACAGCATCTTTAGGAGAATCAGGACTTTAAAGGGCAAGATCGCCAAGCAGTACCCAGAGGCCTTCAGAAACGCCCACGAGTCGCCGGTCCTGGAGGACGACGAGTTTGATCCCATCCCGCCCAGTGTCGCCACGATGATCACCGCCACCATGTCGGGGCAGAGCACCGAGTCATGTGACACGAGCCCCGACGTAATTTCCCCGAATGTAAGCCGGTGTTCCGAAGGCCTCTCCCAGGAGCAGGCCGACACGCCCACCTCTGACCAAGGCCTGCCTAGCCCTGAAACGGACATGCTGAGGGACGAGGGCCCGGACTCAGTACCTGCAGAGTAGAGCCTTCATAACCCAGGCCTAGAGCTCTACTCAGTACCTGCAGAGTAGAGCCTCCGTAACCCAGGCCTAGAGCGCTACTCAGTACCTGCAGAGTAGAGCCTCCGTAACCCAGGCCTAGAGCTCTACTCAGTACCTGCAGAGTAGTGCCTTCATAACCCAGGCTTAGAGTTCTACTCAGTACCCATAGATTAGATAGAAGCAGCAGGAGGTCAATGTGATTGATTTGGCTTTGAGTTTTGGCCAGTTATCTGGTTTGTCGGGTTTGAATCAGTAGCTGATTTGATGGTCAGGATTTAAACCAGCACACTGACTGCTGTTCACTTGTAAACGCCAAGATTGTGTCCAAAGATCCCTTTCGTTAGACACGCTTGTCCATCACTCGCCACTAACAATGAAGAAGATACTTGAATGTGTGTTGTGGTTGTGAAGAACTGAATCCTTCATTACTAACCACAGGAGGACTGCACCCAGCTAGTCATTTGTTTGTGTGCACAGGAGTGGCTCTCTTTAATAATGGTTGAGCTTGGAAATATGCACTCATTTAAAGAGGTAGTGAGCTTTGTTGGTCATGGGTAAGCCTATTGGAATCCAGCTAATTGCAATAGTACAGCCTACCAAAATATGTTTCAATTGTTTTAGTGACACACCTCCTGTTATTTACCCTATTAAAACTAGAGCCTGACCGATAAGGTTATTTGGGTCCGATTTTTGGGGGGACAAAACTTACCGATACAGATATCTGCTGTTATACTGTTTTACAGCAGGGAAATGAAAGTGTCATTTTCCACACTGAATTCTCCTAAATTGCCATTCAGAAGAGCAGTTGTCCCAGAAATATGCTGCTAATGTTGATTTCTTACATTGTGACATAATGAGAATGGCCGCAAACATTCAGATCAGCTTGAGAtacccatcccccccccccccccccccccatcctatttattgaatattagTTATCGTGAAATTATCGGCTGATACCGATAAAGCGTTAAAATGCCAATATCAGCAGATCATTTCGGCGACGCAATATATCGGTCAGCTTCTAATTGAAACCTCACCACCACagactttttttcttcttttttttaacatGCAAAATGTGTGAGTTGCTGCATGGAAGAGTTCAGTATTATTGTTTTCCATTGTTTCTCGGATATCCATTTTATTTTGTTGGGATGACTTGAGCTCGAGTACTAGGCTACACTGTAAATTACCCCTCGGTGAAGTGGCTAACTTAAGCATTCTAAGTCTTTATCTGTATCATGATTACGATAAATGTTACGCAACAACTTGAA

Function

NR:

description
PREDICTED: kxDL motif-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K20818 KXD1, BORCS4; KxDL motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566693.2 False 2118 mRNA 0.45 5 57550952 57556023
XM_021566686.2 True 2084 mRNA 0.46 5 57550953 57556023

Neighbor

gene id symbol gene type direction distance location
LOC110492340 LOC106561069 coding upstream 4776 57536947 ~ 57546176 (+)
LOC110492265 dennd5a coding upstream 23869 57467108 ~ 57527083 (+)
LOC110492368 LOC106561072 coding upstream 92866 57454370 ~ 57458086 (+)
LOC110492381 LOC106561071 coding upstream 96856 57449413 ~ 57454096 (+)
LOC110492347 LOC106561068 coding upstream 101688 57440643 ~ 57449264 (+)
LOC110492308 LOC106561065 coding downstream 782 57556805 ~ 57560839 (+)
LOC110492452 ccdc34 coding downstream 18225 57574248 ~ 57579830 (+)
LOC110492461 LOC106561056 coding downstream 24131 57580154 ~ 57583524 (+)
ush1c LOC106561052 coding downstream 50837 57606860 ~ 57655596 (+)
LOC110492500 LOC106561050 coding downstream 111204 57667227 ~ 57789395 (+)
G163049 NA non-coding upstream 16709 57533948 ~ 57534243 (+)
G163048 NA non-coding upstream 18784 57531949 ~ 57532168 (+)
G163047 NA non-coding upstream 19777 57530950 ~ 57531175 (+)
G162955 NA non-coding upstream 204463 57346238 ~ 57346489 (+)
G163352 NA non-coding downstream 105929 57661952 ~ 57664441 (+)
G163362 NA non-coding downstream 233684 57789707 ~ 57792414 (+)
G163438 NA non-coding downstream 238526 57794549 ~ 57794862 (+)
G163464 NA non-coding downstream 289100 57845123 ~ 57845437 (+)
G163473 LOC106613263 non-coding downstream 299261 57855284 ~ 58335346 (+)
G162130 NA other upstream 497310 57048314 ~ 57053642 (+)
G161687 NA other upstream 1298354 56245044 ~ 56252598 (+)
G160569 NA other upstream 1603707 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2822092 54728296 ~ 54728860 (+)
G159415 NA other upstream 3197564 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 372127 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 659654 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2389685 59945708 ~ 59953165 (+)
G166878 NA other downstream 2959609 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3295409 60851417 ~ 60866455 (+)

Expression


Co-expression Network