LOC110492308 (LOC106561065)


Basic Information

Item Value
gene id LOC110492308
gene name LOC106561065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57556805 ~ 57560839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566525.2
ATATCCTCACTGTAAATCAtctactccagaatgttatgttTACTGTAAGTATGTTGACTGTGTCTGTATTCTGTTAGTACACTGTCTATGTACTATAGTACACTGTCTAAGTCAATGTACTATACTTGACGAATAGGGATTCTGATGCCCTCTGCTGGCCAGACACTGATTTTATGGGATCACTCACAGATCCAGGCCAAAAGCCAAGTTTCGAATTCGGTGGAAGCCACACCTACTGCTCAGAACAAACCATTAAACCGGGAAACAAgtatctctctctgactctgctgCTCAGTCTGATAGGGTGTGTTTCACCATGGCAGAAGCTGTTTTTGATAAggatttgattacctgttcaatCTGTCTGGATCCACTGAAGGATCCAGTGACTACTGCCTGTGGACACAGTTACTGTATGGGCTGCATTAAAGAAAGCTGGGATCAGGATGATGGGAAAGGTGTCTACAGCTGTCCCCAGTGCAGGCAGACCTTCACCCCAAGACCTGTTCTGGGGAAAAATACTCTACTGAACGAATTGGTGGAGAAACTGAAGATGACAGGACTCCAAGCTGCTCCTCCTGCTTACTGTTGTGCTGGACCTTTAGATGTGGGGTGTGACATCTGCGCTGGGAGAAAACTCAAAGCTGTCAAGTCCTGTCTGCTGTGTCTTGCCTCTTACTGTGCGACTCACCTAAAACTTCACAATGACCTCAACCAAGGAAAAAAACACAAGTTGATTGATGCCACTAGACTACAGGAGAAGATTTGCACTCGCCATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTCTGCTGTGTGTGATTGATGATCATAAAGGACATGATATAGTCGCCGCTGCAGAAGAAAGGACTGAAAAACAGAAGCAGTTGGGAGGAAATAATCTGAAATCCCAGCAGAGAAtccagaagagagagaaggagatgcagGAGCTGAGACAGGCTGTGGACTCTCTGAAGCGCTCTGCACAAGCGGAATTGTTTGATAGCGAGAGGACCTTGACTGAGCTCATCCACTCCGTTGAGAAAAGGCGCTCTgaggtgaaggagctgatcaTTGCCCAAGCGAAGGCTCAAGTGAGTCTAGCTAAAAGGCATCTGAAGCAACTGGAGCAAGAGGTCGCTGAACTGAGGAGGAGAGATGCTGAGCTAAAGCACCTGTCACACACAGAAGATCACATCCATTTCCTCCAGCATTTCcagtctctctgtgtccctcttggATCTGAGGGCACACCCAGCATCATTGTCACCTTTGAGCACGTGAAGAAATTTGTCACTGAACTGAAAGAGCGACTACAAGACATCTGCAAGGAGGAAATGGACAGAATATACGGGAAAGTGACTAAAGTTCCAAACATTCGCCTTTCTGAGCCCAAGACCAGAGAGGAGTTCTTAGAATACTGCTGCCCGCTGACATTGGATCCCAACACAGCAAATCAACTCCTGTGTCTGTCTGAGGGGAACAGAAAGGTGACCAGGAGTCATAAGATCCAGGCCTATCCCAACCATGAACATAGATTTAGCCACTGGAAACAGGTGTTGTGTAAAGAGGGTGTCTGGAGTGTGTCTGAACCCTGCtactgggaggtagagtggaCCGGGGTGGAGGTTGATGTAGCCGTCTCATATAAAGGGATCAGCAGGAGAGGAAGTGGTCGAGAGTGTTGGTTTGGTGCTAATGACCAGTCCTGGAGGTTGTACTGCTCTGCATCTAGATGCTGTTTCTACCATAATGGTAGAGCGACTTCTATCCCCGTCATCTGCTCAGACTCCAGAGTCGGAGTGTACCTGGACCACAGGGCAGGAACTCTGTCCTTTTACAGCGTGACTGTCTCAGACACCATGACCCTCCTCCACGGAGTCAAGACCACGTTCACTCGGCCCCTCTACCCTGGGTTTGGGGTTGGTTCATCTGTGAGGATACTGACACCATTTATGAGTAGTAACTAACTTAATATGTACGGTGGAAAATATGAACCTAGATTACAGTACTTCCCTATGGAACTACTGTGCAAATAGAAAAGTATCAGGAACACATTGTAAAGTGGCACGGTTATTTGTGTACTTTTTGGAAACTTTGAAAAAGCCCTGTTGATTGTCATCAATCATACTCCCTGTGTGTACAGCGAACAATAAGTTCAGCTGCTGTTCAACCTATTCAATGCCAACCATAAGACCATGTGTTTAGACTTTGCGATGTAAGTAGGGTAGTATACTGGTCACTTTGTACTTTTCTAACCATAACTAGCCATAACTCTGCCTTACCATATAGTAATGTATGTATACTATgcactactctactatattagTTCATTAAAAGTGAGAGTGATTTGTT

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566525.2 True 2372 mRNA 0.46 6 57556805 57560839

Neighbor

gene id symbol gene type direction distance location
LOC110492398 LOC106561074 coding upstream 782 57550952 ~ 57556023 (+)
LOC110492340 LOC106561069 coding upstream 10629 57536947 ~ 57546176 (+)
LOC110492265 dennd5a coding upstream 29722 57467108 ~ 57527083 (+)
LOC110492368 LOC106561072 coding upstream 98719 57454370 ~ 57458086 (+)
LOC110492381 LOC106561071 coding upstream 102709 57449413 ~ 57454096 (+)
LOC110492452 ccdc34 coding downstream 13409 57574248 ~ 57579830 (+)
LOC110492461 LOC106561056 coding downstream 19315 57580154 ~ 57583524 (+)
ush1c LOC106561052 coding downstream 46021 57606860 ~ 57655596 (+)
LOC110492500 LOC106561050 coding downstream 106388 57667227 ~ 57789395 (+)
LOC110492531 LOC106561047 coding downstream 234424 57795263 ~ 57797634 (+)
G163049 NA non-coding upstream 22562 57533948 ~ 57534243 (+)
G163048 NA non-coding upstream 24637 57531949 ~ 57532168 (+)
G163047 NA non-coding upstream 25630 57530950 ~ 57531175 (+)
G162955 NA non-coding upstream 210316 57346238 ~ 57346489 (+)
G163352 NA non-coding downstream 101113 57661952 ~ 57664441 (+)
G163362 NA non-coding downstream 228868 57789707 ~ 57792414 (+)
G163438 NA non-coding downstream 233710 57794549 ~ 57794862 (+)
G163464 NA non-coding downstream 284284 57845123 ~ 57845437 (+)
G163473 LOC106613263 non-coding downstream 294445 57855284 ~ 58335346 (+)
G162130 NA other upstream 503163 57048314 ~ 57053642 (+)
G161687 NA other upstream 1304207 56245044 ~ 56252598 (+)
G160569 NA other upstream 1609560 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2827945 54728296 ~ 54728860 (+)
G159415 NA other upstream 3203417 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 367311 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 654838 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2384869 59945708 ~ 59953165 (+)
G166878 NA other downstream 2954793 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3290593 60851417 ~ 60866455 (+)

Expression


Co-expression Network