ush1c (LOC106561052)


Basic Information

Item Value
gene id ush1c
gene name LOC106561052
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57606860 ~ 57655596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951561.1
CACTGTTGAGAGGGTACTGTCGCTAACAGGAAGATAGAACATCGGTCGGTGTCAGCGTTATTATTTTGTCGAAAATGGAACGAAAAGTAGCTCGAGAATTTAGGCACAAGGTGGAGCTGCTCATTGACAATGAGGCTGAAAAGGATTACCTATACGATGTCCTGCGGATGTATCACCAGTCCATGGAGCTGCCCGTGTTGGTGGGTGACCTGAAGCTGGTCATCAACGAGCCCAGCCGCCTGCCGCTGTTTGATGCCATCCGGCCCCTCATTCCCCTCAAACACCAGGTGGAGTACGACCTGCTCACCCCGAAGAGGTCACGTAAGCTGAAGGAGGTGCGTCTGGATCGTACTCATCCTGAGGGTCTGGGTCTGAGCGTGAGAGGGGGCCTGGAGTTCGGCTGTGGACTCTTCATCTCACAGATCGTCAAGGATGGACAGGCTGGAAACAGTGGCCTgcagATGGGAGATGAGATTGTCCGCATCAATGGATACGCCATCTCTTCCTGTATCCACGAGGAAGTCATCAACCTTATCAAGACCAAGAAAATCGTGTCGCTCAAAGTCAGGCAGGTTGGGATGATACCAGTGAAGAGTTCCACAGAGGAGCCTCTGAAGTGGCAGTTCGTGGACCAATTTGTGTCTGATTCTGGGgagaAGAAGAGCAGTGTGGCAGGCCTGGCATCCATGGGAGGGAAGGAGATCAAGGAGAAGAAGGTGTTCCTGAGCCTGGTGGGCACCAAGGGCATGGGCGTCAGCATCTCCAGTGGCCCCACACAGAAGCCTGGCATCTACATCAGTAACGTCAAATCTGGATCCCTCGCTGCTGAAGTAGGACTGCAGATTGGTGACCAGATCGTGGAGGTGAATGGGGTGGAATTCACCAATCTGGACCACAAAGAGGCTGTAAGAGTTCTGAAGAGTAGCAGGAGTCTAACCATCACAGTTCTCACCGGCGCAggcagtgAGTTGTTTATGACAGACGAGGAGCGTCTGGCGGTGGAGGCTCGCAGGGAGCTGGACAGACGAGAGTTGATGCACCAGAAAAGGGTTGCCCTGGAGACTAACAAGATGGtcaaggagcagcaggagaaagagaggcaGAGAAAGATGGAGATTTCTCAGAAGACTGCCGAGGAAGAGGAACGCTATCGGAAGGAGATGGAGAAGATCGAGGCTGCGGAGAGGAAGCACCACAGGGAGTGGGAGGAGGACTGGGCGCCTAGAGAGCAACCCAAAACCAAGAGTCCCTCCCCGGCCCCGCCTGAAATCAACACCGCACCCCCCAAGTCCAAGAACTCTGACATTGGAGCAAGCTCTTTTCAGGCTGACGACGACGATgaagagcagcaggaggaggaggagaaggaagaggggagTGAAGGCTTTCAGAAATACGTGGAAGACTTTGATCCCCACTCcatgTTCTCCTCGGAACAGATAGCTGGGCGAGACGTGAGACTACTGAGAATCAAAAAGGTTGGACCACTTGATCTGGCTGTGGAGGGGGGAGTAGACTCCCCTCTGGGAAAGCTAGTGGTATCTGCCATTTATGATGGAGGCTCGGCAGACAAACATGGTGGGATAGTTCCAGGAGATGAGGTGATGGCTGTGAATGGGAAGATCCTGACGGACTCCTCACTGACAGAAGGACAAAACTCTCTGACCCGTGCCTGGAACAGTGGAGGGGATTGGATTGACCTGGTGATAGCAGTGTCACCTCCAAAAGAGTATGAAGATGAGGTcccgAAGTCAACATCAGTCAGTCCTACTGTGAACAGAAAGGTGTTTGAAGGCAGTGCATCAGTGTACAGACAAGGCTACCCGGCTCCAGTTTTAGCCCTAACCTCCCCACCCTGCACACCCCCACCTgaCGTTCTTCTGAGAGTCACCTGACCACCTGCCTGCCAAACAAGCCATACCCACCATCCAGGAACCATCGTTCTCATTTCCTCTGACATTTGACCTATTTTATCATCACAATCAAATCCCTGCATCAAACTGTTGCAATGCAATGCTGATCACTATTGACAGCAAGTCTGTTTGAACCAGAACCACGCCGTGATGTGCTACATGTGAACTGTCTAGAATGTGAAAGAGACTGATTCATCCTCTGTTGAGTTCCATTACATCCCAGTTACATCCCACATCCCAGTACAGAAACTTTCTGAAGAAGCTAGAGGGTTATGACATCACTACGTAATACTCTGAGCCGATATTCACGGCATAAGAAGGAATTCACCTCGGGCCACACACACAAATTGGGGAAAAACAAAACATTCTTTCCAATTGAACCTCATTATAAAAGAGCCAACTTCATCGtcgatttttgttgttgttatacaCACATTTAAAAAATGCCGAAAAGCTGCTGTGTTGCTCAGTGTACCAGGTCAAAAATCCAGACCTATGGTTTGTAATACTTCCACGTAGGGAAATAGTGCCTGCGAGAAGAGCCCTCTGGATTTCGGTGTAGGAGAGTGAGAAATGTAGGGACCCGgtgtccaagtaggctacacGTAGCTATGTGTGTAGATAACATTTCCTCACAGGTAAGACATTTCATTTGTTTAGTATCGTCCGTTTGTAACTCCACTACTTGTCGCTGTATAGtccgtttgtttgtgttgttggtcttggcCACAAGTTGTTTTACCCCACGGTGTGCGGGGCCGCAACGTTCTATCTCATACCGACCAGGACTATCCCCCTCAGAGCCATATATTTTTTAGCCTGGGTACCCGTCTTTTTAGCCAATGTTCCCCTCCTTGTAGCCTACTCCGTACTATTTGTGAAGTAAATTGAGTATATAGTATCCCAATTgctcatagtatggatatagttagtatgccaaaattACACTCAAGTGAAAGGGTACCgttcgtttacagtatactaaaatgaactaatcgtatatagtatgtagtatacagtatgttagtatgggtatccAAACACAGCTGGTACTGTAGTGAAATGTTAGCTATAGCTGAAAAGACTGGTACCCGGACTATATATTTAGAGAGTTGAGACAACTTTtacaatttcaaatatggttTTAATTCTAGACATTCAGTTCCATAGCATTATTTAAATATTCCTCGTGTAATGTTAAAGTAAcggtccagtgtttccagatttctatgaaatatgacctataattacttacaatatgagtgaaatagttttccttccaaaaagTGGTAATGTTAAAAaacagcttttctgtgttggaatagtgtgggcgtaccccaacaggTACCCCAACCTGTCATTCAAAATATTAACGTGAGTAGAgggctgattggccagctcatttTCCTCAGGAGGATGACCTCATACtttatgaggaaatagcaagcattttagaaactgtctgtttgagatacaagtttgtgttttttctccaatttatgctttggccacgtACAAGTacaggatgagtcaacaacattatttgggtatgagtaaACAGAATATGAACTTTAAAAAGTGAGAtgttcactggacagttactttaatggGTCGCTAACATGGTTGCCATATCATTTTGATTtgtcatgtaaatgcatcataatgcagaAATCTCAATGTCCCAACTAATTACATAGCGATGTTCCCCATTCGTCTCCTTCTAGTACACTACAGCATAGGAACacagttgtgaaaaactgaactCTGATGCTGAGGGGCATCGGTGTCAACAGGTTTTGATCCTCTGAGTTTAGTTAAATGCTAAGTGCATCTTAATGAGCTTCTAGTATGCCATAAGCCCCCTCGTTATAGGTGAAATTACACTCCTAAATCTCCAATGAAAGGTGTTAGAGCTTATCTGTATTCAGTTTAGAGTATGTAATCAGCAGCAGGAGCAGccctgcaggcaggcaggcaggcaggctcactGTGATGTAATCAATGTCCCTATTTGAAATCAATGCTCTCTCAGAATCAATAAAGGTATGTGCTTACTTTGACTGA
>XM_036951570.1
CACTGTTGAGAGGGTACTGTCGCTAACAGGAAGATAGAACATCGGTCGGTGTCAGCGTTATTATTTTGTCGAAAATGGAACGAAAAGTAGCTCGAGAATTTAGGCACAAGGTGGAGCTGCTCATTGACAATGAGGCTGAAAAGGATTACCTATACGATGTCCTGCGGATGTATCACCAGTCCATGGAGCTGCCCGTGTTGGTGGGTGACCTGAAGCTGGTCATCAACGAGCCCAGCCGCCTGCCGCTGTTTGATGCCATCCGGCCCCTCATTCCCCTCAAACACCAGGTGGAGTACGACCTGCTCACCCCGAAGAGGTCACGTAAGCTGAAGGAGGTGCGTCTGGATCGTACTCATCCTGAGGGTCTGGGTCTGAGCGTGAGAGGGGGCCTGGAGTTCGGCTGTGGACTCTTCATCTCACAGATCGTCAAGGATGGACAGGCTGGAAACAGTGGCCTgcagATGGGAGATGAGATTGTCCGCATCAATGGATACGCCATCTCTTCCTGTATCCACGAGGAAGTCATCAACCTTATCAAGACCAAGAAAATCGTGTCGCTCAAAGTCAGGCAGGTTGGGATGATACCAGTGAAGAGTTCCACAGAGGAGCCTCTGAAGTGGCAGTTCGTGGACCAATTTGTGTCTGATTCTGGGgagaAGAAGAGCAGTGTGGCAGGCCTGGCATCCATGGGAGGGAAGGAGATCAAGGAGAAGAAGGTGTTCCTGAGCCTGGTGGGCACCAAGGGCATGGGCGTCAGCATCTCCAGTGGCCCCACACAGAAGCCTGGCATCTACATCAGTAACGTCAAATCTGGATCCCTCGCTGCTGAAGTAGGACTGCAGATTGGTGACCAGATCGTGGAGGTGAATGGGGTGGAATTCACCAATCTGGACCACAAAGAGGCTGTAAGAGTTCTGAAGAGTAGCAGGAGTCTAACCATCACAGTTCTCACCGGCGCAggcagtgAGTTGTTTATGACAGACGAGGAGCGTCTGGCGGTGGAGGCTCGCAGGGAGCTGGACAGACGAGAGTTGATGCACCAGAAAAGGGTTGCCCTGGAGACTAACAAGATGGtcaaggagcagcaggagaaagagaggcaGAGAAAGATGGAGATTTCTCAGAAGACTGCCGAGGAAGAGGAACGCTATCGGAAGGAGATGGAGAAGATCGAGGCTGCGGAGAGGAAGCACCACAGGGAGTGGGAGGAGGACTGGGCGCCTAGAGAGCAACCCAAAACCAAGAGTCCCTCCCCGGCCCCGCCTGAAATCAACACCGCACCCCCCAAGTCCAAGAACTCTGACATTGGAGCAAGCTCTTTTCAGGCTGACGACGACGATgaagagcagcaggaggaggaggagaaggaagaggggagTGAAGGCTTTCAGAAATACGTGGAAGACTTTGATCCCCACTCcatgTTCTCCTCGGAACAGATAGCTGGGCGAGACGTGAGACTACTGAGAATCAAAAAGGTTGGACCACTTGATCTGGCTGTGGAGGGGGGAGTAGACTCCCCTCTGGGAAAGCTAGTGGTATCTGCCATTTATGATGGAGGCTCGGCAGACAAACATGGTGGGATAGTTCCAGGAGATGAGGTGATGGCTGTGAATGGGAAGATCCTGACGGACTCCTCACTGACAGAAGGACAAAACTCTCTGACCCGTGCCTGGAACAGTGGAGGGGATTGGATTGACCTGGTGATAGCAGTGTCACCTCCAAAAGAGTATGAAGATGAGGTgaCGTTCTTCTGAGAGTCACCTGACCACCTGCCTGCCAAACAAGCCATACCCACCATCCAGGAACCATCGTTCTCATTTCCTCTGACATTTGACCTATTTTATCATCACAATCAAATCCCTGCATCAAACTGTTGCAATGCAATGCTGATCACTATTGACAGCAAGTCTGTTTGAACCAGAACCACGCCGTGATGTGCTACATGTGAACTGTCTAGAATGTGAAAGAGACTGATTCATCCTCTGTTGAGTTCCATTACATCCCAGTTACATCCCACATCCCAGTACAGAAACTTTCTGAAGAAGCTAGAGGGTTATGACATCACTACGTAATACTCTGAGCCGATATTCACGGCATAAGAAGGAATTCACCTCGGGCCACACACACAAATTGGGGAAAAACAAAACATTCTTTCCAATTGAACCTCATTATAAAAGAGCCAACTTCATCGtcgatttttgttgttgttatacaCACATTTAAAAAATGCCGAAAAGCTGCTGTGTTGCTCAGTGTACCAGGTCAAAAATCCAGACCTATGGTTTGTAATACTTCCACGTAGGGAAATAGTGCCTGCGAGAAGAGCCCTCTGGATTTCGGTGTAGGAGAGTGAGAAATGTAGGGACCCGgtgtccaagtaggctacacGTAGCTATGTGTGTAGATAACATTTCCTCACAGGTAAGACATTTCATTTGTTTAGTATCGTCCGTTTGTAACTCCACTACTTGTCGCTGTATAGtccgtttgtttgtgttgttggtcttggcCACAAGTTGTTTTACCCCACGGTGTGCGGGGCCGCAACGTTCTATCTCATACCGACCAGGACTATCCCCCTCAGAGCCATATATTTTTTAGCCTGGGTACCCGTCTTTTTAGCCAATGTTCCCCTCCTTGTAGCCTACTCCGTACTATTTGTGAAGTAAATTGAGTATATAGTATCCCAATTgctcatagtatggatatagttagtatgccaaaattACACTCAAGTGAAAGGGTACCgttcgtttacagtatactaaaatgaactaatcgtatatagtatgtagtatacagtatgttagtatgggtatccAAACACAGCTGGTACTGTAGTGAAATGTTAGCTATAGCTGAAAAGACTGGTACCCGGACTATATATTTAGAGAGTTGAGACAACTTTtacaatttcaaatatggttTTAATTCTAGACATTCAGTTCCATAGCATTATTTAAATATTCCTCGTGTAATGTTAAAGTAAcggtccagtgtttccagatttctatgaaatatgacctataattacttacaatatgagtgaaatagttttccttccaaaaagTGGTAATGTTAAAAaacagcttttctgtgttggaatagtgtgggcgtaccccaacaggTACCCCAACCTGTCATTCAAAATATTAACGTGAGTAGAgggctgattggccagctcatttTCCTCAGGAGGATGACCTCATACtttatgaggaaatagcaagcattttagaaactgtctgtttgagatacaagtttgtgttttttctccaatttatgctttggccacgtACAAGTacaggatgagtcaacaacattatttgggtatgagtaaACAGAATATGAACTTTAAAAAGTGAGAtgttcactggacagttactttaatggGTCGCTAACATGGTTGCCATATCATTTTGATTtgtcatgtaaatgcatcataatgcagaAATCTCAATGTCCCAACTAATTACATAGCGATGTTCCCCATTCGTCTCCTTCTAGTACACTACAGCATAGGAACacagttgtgaaaaactgaactCTGATGCTGAGGGGCATCGGTGTCAACAGGTTTTGATCCTCTGAGTTTAGTTAAATGCTAAGTGCATCTTAATGAGCTTCTAGTATGCCATAAGCCCCCTCGTTATAGGTGAAATTACACTCCTAAATCTCCAATGAAAGGTGTTAGAGCTTATCTGTATTCAGTTTAGAGTATGTAATCAGCAGCAGGAGCAGccctgcaggcaggcaggcaggcaggctcactGTGATGTAATCAATGTCCCTATTTGAAATCAATGCTCTCTCAGAATCAATAAAGGTATGTGCTTACTTTGACTGA

Function

NR:

description
PREDICTED: harmonin-like isoform X5

GO: NA

KEGG:

id description
K21877 USH1C; harmonin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951561.1 False 3977 mRNA 0.47 21 57606860 57655596
XM_036951570.1 True 3850 mRNA 0.46 20 57606860 57655596

Neighbor

gene id symbol gene type direction distance location
LOC110492461 LOC106561056 coding upstream 23336 57580154 ~ 57583524 (+)
LOC110492452 ccdc34 coding upstream 27030 57574248 ~ 57579830 (+)
LOC110492308 LOC106561065 coding upstream 46021 57556805 ~ 57560839 (+)
LOC110492398 LOC106561074 coding upstream 50837 57550952 ~ 57556023 (+)
LOC110492340 LOC106561069 coding upstream 60684 57536947 ~ 57546176 (+)
LOC110492500 LOC106561050 coding downstream 11631 57667227 ~ 57789395 (+)
LOC110492531 LOC106561047 coding downstream 139667 57795263 ~ 57797634 (+)
LOC110492579 LOC106561044 coding downstream 384742 58040338 ~ 58109443 (+)
LOC110492604 LOC106561042 coding downstream 454527 58110123 ~ 58111180 (+)
LOC110492647 LOC106561039 coding downstream 598008 58253604 ~ 58296746 (+)
G163049 NA non-coding upstream 72617 57533948 ~ 57534243 (+)
G163048 NA non-coding upstream 74692 57531949 ~ 57532168 (+)
G163047 NA non-coding upstream 75685 57530950 ~ 57531175 (+)
G162955 NA non-coding upstream 260371 57346238 ~ 57346489 (+)
G163352 NA non-coding downstream 6356 57661952 ~ 57664441 (+)
G163362 NA non-coding downstream 134111 57789707 ~ 57792414 (+)
G163438 NA non-coding downstream 138953 57794549 ~ 57794862 (+)
G163464 NA non-coding downstream 189527 57845123 ~ 57845437 (+)
G163473 LOC106613263 non-coding downstream 199688 57855284 ~ 58335346 (+)
G162130 NA other upstream 553218 57048314 ~ 57053642 (+)
G161687 NA other upstream 1354262 56245044 ~ 56252598 (+)
G160569 NA other upstream 1659615 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2878000 54728296 ~ 54728860 (+)
G159415 NA other upstream 3253472 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 272554 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 560081 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2290112 59945708 ~ 59953165 (+)
G166878 NA other downstream 2860036 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3195836 60851417 ~ 60866455 (+)

Expression


Co-expression Network