LOC110492572 (ptpn5)


Basic Information

Item Value
gene id LOC110492572
gene name ptpn5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57998305 ~ 58025998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951756.1
cctctctctctctcttcctcctctttgcGAGACAACATGGAGTGAATATCAATGTTTACAGCTGGCAGCTGCGCTACTGACCGTAAAAGGACTGATTCATACAGCATGGCCAACAACTGGTGGTTGCCACAGGATACAGAATTTGACTTGATCATGTGATCTGTCCTCCTTCCTGTACCCTTAGACCTTCCAGAGGGGCATCATGACCAGACGACTGAGCAGCTCGACTCGTTCCCAGACGGAGGACTCCGTCTTCCTAAAGCCAGACGAAGACCCCATATGGCTGGATGACCCTCCAACGACAGACGGCGACCCCTCTCAACCAGGAGATGGCCCCCCAGGCCTTGATGAACCCCCAGGACCAGGGACAGGTCCCCCAGGGCCCCAGAGACACCCAAAGGAACTGTGGAGGGACAAGTTTTACACCATCGTCATGGGGATGCACTGGTGTGCCGTGTTCTGCACAATTTCCCAAATCACGGGTTATTGGGCCTTCTTCCTGGTGGATGGTAATGGGCTTTTCTCAGCCTTCTACAAATCCCTGCAGCTCCTAGACTTCTACCTGGGCGTCCTCCTATCATTCAACCCTGTGTTTGGAGTGGACTCCCTGTGCGTGATGGCGGAGGTGGAGAAAACCAATCACTACTGGGTCCTCCAGGCCACCGAAGGCATTGGCATGGCTATCATTGTCTTCATGATCATCCGCACTGTGTGTAAGTTGGAGTACGGTGATGCGTGGTGGTCAGCGGCGACGGTGGCTGACCATGGGGACAGACGTCAGTCGGTGAGTCGCCAGCCTTCCTTCACCCTGTCGGAGTGGACAGACGCCCAGGAGGACCTGATGGACCTGGAAGCTGAACCCCAGACCCCCATCTTTGACCTGGGCCTGGACACCAGGACAGAGGGGGACATCACCACCCTCTCTGTAACACCTGTGGGCCTGCAGGAGAGgagaggCTCCAACGTGTCTCTGACCCTGGACATGTGTTCTCCTGGCTGTACGGAGCCCTATGGCTACGGAGCCCAGCTCTCCCCCAGAGACCAGACTGCCAAGGAGTACCTGAGGGAGGGAACAAACACTCTCACCCCTAGCCAGCTCCACACACGCGCTATAGACGACCAGGCCCTACAGGCTGAGTTCTATGAAACTCCCATGAACTTTGTGGACCCAAAGGAGTATAACTACCCGGGCCTGGTGAGGAAGAACCGCTACAAGACCATCCTCCCCAACGCACACAGCCGAGTGATACTCCGGACAGCAGATGAAGATGAGTTCCTCAGTACCTACATCAACGCTAACTACCTACAGGGTTATGGGGGTGAGGAGCGGGCGTACATCGCTACCCAGGGTCCTACAGTGAACACAGTGGGAGACTTCTGGAGGATGGTGTGGCAGGAGCGCTGTCCCATCATCGTCATGATCACGAACCTAGAGGAGAAGaatgagAAATGTGCAGAGTACTGGCCTGAGGACTCTGTGACCCACGAGGGCATCGAGATCAAGGTTGTCACGGTAACCCAGGAGGACGACTACAGCCTGAGGGTCTTCACTCTGAAGTTTGATGGAGAGGAGCGCAGCCTCAGGCAGTACTGGTACACCTCCTGGCCTGACCAGAAGACCCCAGACAAAGCCCCGCCCCTCCTGGAGCTGGTAGAGGAAGTGGAGCAGGCCAGAGCGGAAGCTCCGCCCACCAGCGGCCCTGTCATCGTCCACTGCAGTGCTGGGATAGGTCGGACAGGCTGTTTCATCGCCACCTCCATCCTGTGTAAACAGCTGAGGAGTGAGGGCGTGGTCGACATCCTGAGGACCACCTGCCAGCTCCGCCTCGACAGaggcGGGATGATCCAGACGGGTGAGCAGTACCAGTTTGTTCACCACGTCCTCAGCCTCTACGAGAAGCAGCTGTCCCACATTGTAGAGGAGTAGAGacacaccactgtactgtacctactgtacaatgtacctactgtacctactgtattgtacactgtactgtacactgtacctactgtactgtacactgtaccTACTGTATTGTACAATGTACCTACTGTACACTGTACCTACTGTATTGTACACTGTGCCTACTGTATTGTACAATgtacctactgtactgtacactgtactgtacactgtacctactgtactgtacacggTGCCTACTGTACTGTGCActgtacctacagtacctactgtactgtacactgtacatACTCTATTGTACATTGTACCTACTCTATTGTACACtgtacctactgtacctactgtactgtacctactgtactgtacctactgTATTGTACACTGATAGCTACTGTACACGgtacctacagtactgtacacggtacctactgtactgtacacggtacctacagtactgtacacggtacctactgtactgtacacccaTCTCAATGTCACCCTTTAGCACACACAACCACAAAAACAATAACAGACTATGTCAGCCTCATCCAGCCCCCTTCCATTTCAGAGGCCCACGTACGAGAAGCCCAATCCTGACGTAAATTCCTTAATTCGGCAAGAATTTGACTGATTTGATTTGCAGACCATGCTCTAAGAGTAGCAATGACTACATGTCTGTCTGGCCCCACTTCTAACGCAGACATTTGTTGTCACACTTGGCAGAGGTCTGTCCAGTAGGATATTTGATAAGATATGTCCCGTCAAGTGCCATGTTAGATTATTCAGACTTCTCCAGATAAGAGAAAGTCCAGCCTATATTCACGGTGTTGTAAAACAGTCTCACAGTGAGGGACCACCAGTTCGTCTGAAACGTAAACCGCCAACTAGCTTTTCTCTCCTGTTACAACAAAACCATCTCCATACGAGCAAAAGACGTAGAAAAATGTCAATGTTCAAAGTCTTGTGCTCACTTGGCCTCTTCAAATAAACACAGTACAGCAGGCCT
>XM_036951749.1
GTGTTATGATTCttccctcctccctactccctctctctatccctccctctccctcgttCTGGCTCTGTTGCCAAGGCTACCATATAGCCTCTTGCTGCATATACCTAGACGAGGCTGTCGCTTGTGGATCTTTCGCTCTCCTCCAGGAAACAAACAAAAGAAAACCCgtcacatacactctctctctcacacacacacacacacatacacacacacacacacacacacacatacacacacacacacacacactgataaagGAAACAAGTATTTTCAGATTGCGTTGTGTCAAAGGGTTGAGTtgagagggaggaaggatggTAATGTGAAGAGAAACACACCCAGGACTGATTCATACAGCATGGCCAACAACTGGTGGTTGCCACAGGATACAGAATTTGACTTGATCATGTGATCTGTCCTCCTTCCTGTACCCTTAGACCTTCCAGAGGGGCATCATGACCAGACGACTGAGCAGCTCGACTCGTTCCCAGACGGAGGACTCCGTCTTCCTAAAGCCAGACGAAGACCCCATATGGCTGGATGACCCTCCAACGACAGACGGCGACCCCTCTCAACCAGGAGATGGCCCCCCAGGCCTTGATGAACCCCCAGGACCAGGGACAGGTCCCCCAGGGCCCCAGAGACACCCAAAGGAACTGTGGAGGGACAAGTTTTACACCATCGTCATGGGGATGCACTGGTGTGCCGTGTTCTGCACAATTTCCCAAATCACGGGTTATTGGGCCTTCTTCCTGGTGGATGGTAATGGGCTTTTCTCAGCCTTCTACAAATCCCTGCAGCTCCTAGACTTCTACCTGGGCGTCCTCCTATCATTCAACCCTGTGTTTGGAGTGGACTCCCTGTGCGTGATGGCGGAGGTGGAGAAAACCAATCACTACTGGGTCCTCCAGGCCACCGAAGGCATTGGCATGGCTATCATTGTCTTCATGATCATCCGCACTGTGTGTAAGTTGGAGTACGGTGATGCGTGGTGGTCAGCGGCGACGGTGGCTGACCATGGGGACAGACGTCAGTCGGTGAGTCGCCAGCCTTCCTTCACCCTGTCGGAGTGGACAGACGCCCAGGAGGACCTGATGGACCTGGAAGCTGAACCCCAGACCCCCATCTTTGACCTGGGCCTGGACACCAGGACAGAGGGGGACATCACCACCCTCTCTGTAACACCTGTGGGCCTGCAGGAGAGgagaggCTCCAACGTGTCTCTGACCCTGGACATGTGTTCTCCTGGCTGTACGGAGCCCTATGGCTACGGAGCCCAGCTCTCCCCCAGAGACCAGACTGCCAAGGAGTACCTGAGGGAGGGAACAAACACTCTCACCCCTAGCCAGCTCCACACACGCGCTATAGACGACCAGGCCCTACAGGCTGAGTTCTATGAAACTCCCATGAACTTTGTGGACCCAAAGGAGTATAACTACCCGGGCCTGGTGAGGAAGAACCGCTACAAGACCATCCTCCCCAACGCACACAGCCGAGTGATACTCCGGACAGCAGATGAAGATGAGTTCCTCAGTACCTACATCAACGCTAACTACCTACAGGGTTATGGGGGTGAGGAGCGGGCGTACATCGCTACCCAGGGTCCTACAGTGAACACAGTGGGAGACTTCTGGAGGATGGTGTGGCAGGAGCGCTGTCCCATCATCGTCATGATCACGAACCTAGAGGAGAAGaatgagAAATGTGCAGAGTACTGGCCTGAGGACTCTGTGACCCACGAGGGCATCGAGATCAAGGTTGTCACGGTAACCCAGGAGGACGACTACAGCCTGAGGGTCTTCACTCTGAAGTTTGATGGAGAGGAGCGCAGCCTCAGGCAGTACTGGTACACCTCCTGGCCTGACCAGAAGACCCCAGACAAAGCCCCGCCCCTCCTGGAGCTGGTAGAGGAAGTGGAGCAGGCCAGAGCGGAAGCTCCGCCCACCAGCGGCCCTGTCATCGTCCACTGCAGTGCTGGGATAGGTCGGACAGGCTGTTTCATCGCCACCTCCATCCTGTGTAAACAGCTGAGGAGTGAGGGCGTGGTCGACATCCTGAGGACCACCTGCCAGCTCCGCCTCGACAGaggcGGGATGATCCAGACGGGTGAGCAGTACCAGTTTGTTCACCACGTCCTCAGCCTCTACGAGAAGCAGCTGTCCCACATTGTAGAGGAGTAGAGacacaccactgtactgtacctactgtacaatgtacctactgtacctactgtattgtacactgtactgtacactgtacctactgtactgtacactgtaccTACTGTATTGTACAATGTACCTACTGTACACTGTACCTACTGTATTGTACACTGTGCCTACTGTATTGTACAATgtacctactgtactgtacactgtactgtacactgtacctactgtactgtacacggTGCCTACTGTACTGTGCActgtacctacagtacctactgtactgtacactgtacatACTCTATTGTACATTGTACCTACTCTATTGTACACtgtacctactgtacctactgtactgtacctactgtactgtacctactgTATTGTACACTGATAGCTACTGTACACGgtacctacagtactgtacacggtacctactgtactgtacacggtacctacagtactgtacacggtacctactgtactgtacacccaTCTCAATGTCACCCTTTAGCACACACAACCACAAAAACAATAACAGACTATGTCAGCCTCATCCAGCCCCCTTCCATTTCAGAGGCCCACGTACGAGAAGCCCAATCCTGACGTAAATTCCTTAATTCGGCAAGAATTTGACTGATTTGATTTGCAGACCATGCTCTAAGAGTAGCAATGACTACATGTCTGTCTGGCCCCACTTCTAACGCAGACATTTGTTGTCACACTTGGCAGAGGTCTGTCCAGTAGGATATTTGATAAGATATGTCCCGTCAAGTGCCATGTTAGATTATTCAGACTTCTCCAGATAAGAGAAAGTCCAGCCTATATTCACGGTGTTGTAAAACAGTCTCACAGTGAGGGACCACCAGTTCGTCTGAAACGTAAACCGCCAACTAGCTTTTCTCTCCTGTTACAACAAAACCATCTCCATACGAGCAAAAGACGTAGAAAAATGTCAATGTTCAAAGTCTTGTGCTCACTTGGCCTCTTCAAATAAACACAGTACAGCAGGCCT

Function

symbol description
ptpn5 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPN5 (protein tyrosine phosphatase non-receptor type 5).

NR:

description
tyrosine-protein phosphatase non-receptor type 5-like

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18018 PTPN5; tyrosine-protein phosphatase non-receptor type 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951756.1 False 2930 mRNA 0.52 14 57998305 58025552
XM_036951749.1 True 3186 mRNA 0.52 14 57998305 58025998

Neighbor

gene id symbol gene type direction distance location
dusp8a LOC106561046 coding downstream 3616 57928123 ~ 57994689 (-)
LOC110492538 LOC106561048 coding downstream 111364 57797779 ~ 57886941 (-)
LOC110492469 NA coding downstream 396797 57583975 ~ 57601508 (-)
c2h11orf16 cssa10h11orf16 coding downstream 657995 57332151 ~ 57340310 (-)
ric3b ric3 coding downstream 687454 57302760 ~ 57310851 (-)
LOC110492612 LOC106561041 coding upstream 92989 58118987 ~ 58200644 (-)
LOC110492624 NA coding upstream 160285 58186283 ~ 58194922 (-)
LOC110492633 LOC106561040 coding upstream 182498 58208496 ~ 58248173 (-)
LOC110492691 LOC106561037 coding upstream 331790 58355406 ~ 58389301 (-)
LOC110492741 LOC106561034 coding upstream 1318161 59344159 ~ 59356495 (-)
G163819 NA non-coding downstream 203326 57794615 ~ 57794979 (-)
G163837 LOC106561050 non-coding downstream 233182 57761150 ~ 57765123 (-)
G163825 LOC106561050 non-coding downstream 237976 57738768 ~ 57760329 (-)
G163807 NA non-coding downstream 281992 57716050 ~ 57716313 (-)
G163782 NA non-coding downstream 325423 57671091 ~ 57672882 (-)
G164080 NA non-coding upstream 232022 58258020 ~ 58259366 (-)
G164195 NA non-coding upstream 406807 58432805 ~ 58433005 (-)
G164235 NA non-coding upstream 433279 58459277 ~ 58459589 (-)
G164257 NA non-coding upstream 444330 58470328 ~ 58470584 (-)
G163839 LOC106561050 other downstream 208922 57776469 ~ 57789383 (-)
LOC100135818 LOC100135818 other downstream 748198 57244381 ~ 57250155 (-)
G162897 NA other downstream 756933 57240279 ~ 57241372 (-)
G164003 NA other upstream 85343 58111341 ~ 58118221 (-)
G164037 NA other upstream 147661 58173659 ~ 58175088 (-)
G165742 NA other upstream 1455959 59481957 ~ 59482314 (-)

Expression


Co-expression Network