LOC110492624


Basic Information

Item Value
gene id LOC110492624
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58186283 ~ 58194922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037374.1
ggcttttgtggagcgatgggtaacaatgcttcgtgggtgactgttgttgatgtgtgcagagggtccctggttcgcgcccgggtatgggcgaggggacggtctaaagttatactgttacaaatGCACATGACTGCTTGTACCACAATTCTGTTTTAAAAAGCAAACCTAAAAGTTAATTTAACTATTTTATGATAAAGACAGGCGTTGAAGCACATTAGAGTGACTACCCCTAAAAACCATTGAATGGGGTTCTGCTGTTTCATCACCCCCAACGCGTTTAAAGGATCACAGACGTTTTAGACTGAAAAGCCCTATACGGACTGACCATGCAATGCATGCTTCCAGCAGGATGCACAGCCAACTGGTTTGCATGCCCTGCCGAAGGACTAGGTGGTTGGAGTTCGTTGGTGAGTATACCGGTAGCTAGGTGATAGACTGCTGGTTATGTATCAGGTTATGTATATTTTGATCATCGTTATCGCTAGCATAGTAGATGCTAGTTACCCTAACTAGCTAGATGGCTGGCTAACATTAGCCTACCTCAATACAACTTAGTCGAAGAAACACGAGAACATTTCAGATGTACGCAAATCCTTTATAGGAAAAACTTTTTTCAGAATTGTGATGTCACCAGATTAACTGTGgatgcagtataactttagccAGGTAACTAAGATTGAGGGGACCACCATATTTTAGTTAGCTAACtttagcattgctagctattttttACTTACATTGCTAGTAACAGTAATTGCTATCTCTCTAAAGTCAATTGACAACATCAtaatatgtgactcgtttcaggaaactaggggTATACGTCACTATTTCACAGGAGAGCCAATTGAATTTAAACGTTGTTTTTTTTAGCAAAATGTGTTTTATGGCAGaaatgaactttcatgtgccttaataacagacttgtatgccatctgtaaatatgaatcaaattgttaaattatgagcctaatTGGTTTAACCACAGAAAAAGAAAGGATCCTTAcctctagccatgattggctcagataatggatgggctggacatgccgagccATGAGTTCTGATTTTTCTGCCATGTAggacgcttctgtctataacatgagctggtcagtatgtgtaggtattCCTTTATAACgctgcttttttgaaagatattacgtagtagaactgcaaaagtgttgctctccactttctggagggccaagatttgaaatcagtggaatgcccggtggaattagagtatgatagctaaggagatggagaaaatgctGGCATTTGATGGCAAATATGCAAAGGGATCGAAAAGAGAACACCtatctccggattacatcttcaaactaagggcaaccatgggatccgtgacagagagggagaagcgtccatccatgtatacgggtaagagagtctagctagctacattttcagatattatatgtttctaatttagtcagaaagtAGTTTTCATTTCACGTTAAAGCAtacttttagctagctagccaacgttagctggCTGACTCGTCAACTAACGTTATGCTTATGATCTGggtagtaatattattcatatttgAGCCATTTGCAttactagttatagcctaatgttaactaGATAGCTAACATGTAacttggttggttagctacctgcagattcatgcggGGTAGTAATGTTATGAGTTCGGATAATTGTTGAGCTAGCTATGAGCTATGTGTCTAAACAAAATGAtatcactgcgacaactgtcgataCACATAGTATAAACCACCTTCTAGTCTTGAAATCGCCTCATGTGAAtatttaaagagatgggtggggctaaggcttaagaaggtgtgaacgatgctgaatgggtgtagaaaaATGAAAGCTCTCTAGGTTTCtaggtttaccaaaacattcaagggaaaTTTTCTCAAAAGTTTATCaattttcaaagcagaattactttcccattgttcctcaactgtagtgtataatatacaattttctagctcggagtttctacttttatccaatgtaaaaaacacaatttcaagtTTTGCTACATAAGATCGAGCCAGTTGGTCACATatggcaaagttgtttcctactaattatttgccaACTTTTGCATGTCAACATATATCCATGCCACTCTAAATTAGTGTCATTTAGACAACAGTCACATTAGCCTCTGAAGTGCAACCCATGTTTAGGGCACACATAAATATTGGATGCAACTATGGTGGTACCATCTAACTTATGTATGTACTAACTAGCAGTAACAAACCAACCCAGGGCCATAGCAAAACATATGACAGTTGGTTGCATACTGTAACGGCGTCACCGGCCTTAATCTAATCTGGGTACCAGACTGATCCCCTGGTCATGAACAGATGCCGGGACCTTCCAGAAGGAGTGAAGGTGGGTATCatatagtgctgagcgattagtgctttttgaggtcatttcggtttgattataaaaaaaaatgttttatcatgAACTGTTGACATGAAATGCagtatgcattatgtgggttgaaagctgtaacaacacagaatacaactattaataaaagtcccatgatggtagtgactgcccattactgtaAATCACTTATTAACCATTCATATTGCACATTACTTAAACATTTGTTtaatttgatgactttattatttcattccaagtcatcatatcatctctatagagctgctccCTATGCCATCTGACAAAATCACAATTTTAGTAgctcttcaaagtaaataaggcatacttctATGACTGCTGAaaaccaactatcaatcacttggATCATGTATTTCAGGTAGACATACTTTGcgaagcaactgctttctatccCTCTTGATTGCACATTCTCTGTTCTGTCAATTTCTGTGGGTCTCAGTGCTCCACACAGACCAGTCAAGTAGGTGGGCACGCAATGGATTAtcgtcattgtagttaattaccacgttttctgcgctaaactatgtagaatttTGGCCTGTTGAAAACTACAACTCCGTTAATTGCTCAGCACTAGTATCATAACATGTCCAGCAATGTGATTCAAATGGTTTAGCAATCTCCAAAAAGTATTTTATTCACTGTTCACTTGCTATTTTCACAGCttgtcaaacattttttaaaaactgtGTCATGTGACACAAGTACCCTTCTGACACCTCCTCCGTtgttgccagagtctccctcgaTTGCTATGAAAAGGACACGCCATCATGAAGCCTCTGATAGTAACCCGAGTTACTACCCTGATGACACAGATAGCTTCATCAACAACGACAGGCTCTttcagtcaacaccacctcataaGATTGCCTGCTGCAGTTGTTCGAGAGCTATCTAGTTTGCCGCCAAAAATGCAGCATCGAAAAGACCAGCAAGTGGGCTGTCATCAGCATCATGCAGACATGACCTCGCTGTGAGCATTCCTATGAATGTTGACAAGTATCCGGCCAGCAACATTCACCTGTCAGCAGCAACAGCTTTCACAGGCTCATCATTTGTACAAATGCAGAAGTAACTTTGATGAGGGGCCAGGGACTGATCTACGCTGCCATGCCCATCAATGGGGTGCTGGCAAAGACCTCACCCCAGCCTCACATCTTGCCTGCTCACCAACGGGCGTCGATATGGAGAACAGACTTCAACGTAGTATATATTTGTGTGTCAGATATCACCTATCCCTAACTCACGTAGGTAATAgaacagtgactgtgtgtgtgtgttcacagatGCATGAGATGCAGAGAGATCTGGCGCTCAACACAACCACTCAACACATCCACAATAAGATGGACTGGAGATGCTTTTGCCAGACGGCAGCCTCAGGTGTTTGATCGGGAGACCATCATTGGAAACATATATGGAGCCAGCACATGGAGACTTGCAAGATGATGTGATGAAGTCCAGACTGACAGACGGGCTTgttactgatgtctctgaatgaaGAGAGATTTGGTATAAAAGTTTTACTAGACACAACTTTTACTTGTATTGTCTTTTTTCAAGTTTTTTATTGAATTGAATGGTATCAGTCGATATGGGGAGGTAGAAACCCTTTGTATTCTGCACCAGGGTCAGGCAACTCCTGTTGTATACGGGACGCCACacaggaaggtatgaccactCTTGACATGTTTGCCAAGGTAGCCTCATTACCACTAGACCGGATccgtatcggctgggaatgacaatgaAAGAGGAAAGATTGTTATATTAGTAGAACACTGCTTCTGTGGTATTATGGAAAGGGTTGTTTATTCTACATGGGCCTGTTTCTACATTTGAAAGTTATTAAAACCctgtaaaaacaacacatttccctgcacctatttggtgtatgtgacaataaaacaaggGCACACCCAAttaacacccacatcaaaccacacccctcAGCCAACTCACATTTGGCTTCCGTAATGGCTGCCAGTATTTCTTGAGGAGGAtgcccaaaaaaaaaaaaagaggccaAATCAGCGGGTGCAGTTCCTCTTTAAAACCAGCATAAACAAGTAATAGCAATGTAGAGAAAATCTGTGAACTCTTTTCAGCTAACCAGACGTTCCTTTGAGGCCTACATTGTAGGCATGCTCCCTACACATTCTGGCTTGCAAGTCCTGCTACTACTATATAGAAACAAACAATTCTGTCCACTTTTTGCTCATGTACTCTGTTCTCTTCCAAAAATGTGGGCTTAGTTATCTTGAATCTGTGGGCATTGCTTCTCTAACCATGAGAATTGGATTAGCCGTCCATGCCTAGCCTAGAATACTTGGCAGGTCTTAGTGTCTGGGTTCACTGGACCTCTCTCTATTAGACCCAATGCCCCCCCCCCAATTCAATTTGGGGAAATTACCAACAGCATGCTCTGCTGCTTAGGACATGGTCCTAATGCAAATCAATGGCCTTCATTTCTAAAAGTGGGTTTGACAGCGATGTGGCAGACAAATGTATTTTTCCAGAGTTTGTTTTGCAGACTGAGACAAACCTCACGCAACCTCATGTTGACTTTTAAACTAATTGGTGATTATGTTTTGTCCTGCGATGTGATTTGAGAAAGGGAGCATTGCGATTGTAGGACCATAAGCAAGGGAAACATCAAGGGTTCTTGCAGTGGCTCTGAGtactcattaaaaaaaatgtggttATTGAACTGTTTTCAGCTTGCTGTGGCGTTTGATAACATAGCCTTGTGGATGCATGATGCCCACTCAGCCAGCAAGTAGGGACTTAAACTCAGACTGGGTTGTGCTAATTTTGTCCACTCTACAAAATGTGTTATTGGACGTTAGGATGTTACCTCGGGTGAAATCTTGAGAAGGTCGCTGTCAGCTACACATTTATCCTCTGACTTCACACTGAGTGGCAAAGGAAATGTGCCATAGAGAATGAACAATCATGACTGTGTCACTGTTGAAACATTTGTTTACAGTGGAGATTTAAGATTTCCTTGATCTTTTTTGACAATCCCTGAAGTGAGCCAATGCCGAAAAGCAGGTCATTGCATATTCGCACAATTTGTCATGCGCTCGCTGTAATATGAACAATGGTGGTGTACATGTACTAGCCAACAAAAGCATGTCTGTTTGGAATGTACAGATGTCGCCACAGAGGTTACCTCATTTTGTGGGTGTCATTATGCTGTATATCATTCTATGTTGGAATTTGTTTAATGTGATGTTGGCTGCCCAGCGCTTCGGTCATATTTTATTCTCACTGGGATCATTAGCCTAAGTAGAGAACAGTGTCTCCATGTCTTGTTTGTATGCATATCCTGCCTGCAAACCACATTTCCGGGTCACCTAAATCCAAACAGtgtaattattattatacatttttgggggatgGAAAAATGATTAAAGTGAAAACTAAAACAACTAAACTCAGATATAAATGTAGAAAACATAATGGacttgtacactgagtgtacaaaatatgtgctctatgatcccttattgatgtaacttgttaaatccatttcaaaccagtgtagatgaaggggaggagacaggttacagaaggatttttaatccttgagacaactgagacatggattgtgtgtgtgtgtgtaccattcagaaggtgaatgggcaagacaaaatatttaagtgcctttgaaaggagTATGGTAGCTGGTGAtaggcacaccagtttgtgtcaaaaaCTTCAACGCTGCTTGGTTTTTCACgcacaacagtttcccgtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacacaaccgtgggaagcattggagtcgacatgggccagcatccctgtggaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037374.1 True 6309 mRNA 0.41 5 58186283 58194922

Neighbor

gene id symbol gene type direction distance location
LOC110492572 ptpn5 coding downstream 160285 57998305 ~ 58025998 (-)
dusp8a LOC106561046 coding downstream 191594 57928123 ~ 57994689 (-)
LOC110492538 LOC106561048 coding downstream 299342 57797779 ~ 57886941 (-)
LOC110492469 NA coding downstream 584775 57583975 ~ 57601508 (-)
c2h11orf16 cssa10h11orf16 coding downstream 845973 57332151 ~ 57340310 (-)
LOC110492633 LOC106561040 coding upstream 13574 58208496 ~ 58248173 (-)
LOC110492691 LOC106561037 coding upstream 162866 58355406 ~ 58389301 (-)
LOC110492741 LOC106561034 coding upstream 1149237 59344159 ~ 59356495 (-)
LOC110492772 LOC106561030 coding upstream 1621803 59816725 ~ 59823875 (-)
LOC110492782 LOC106561029 coding upstream 1631702 59826624 ~ 59841614 (-)
G163944 NA non-coding downstream 164807 58021094 ~ 58021476 (-)
G163819 NA non-coding downstream 391304 57794615 ~ 57794979 (-)
G163837 LOC106561050 non-coding downstream 421160 57761150 ~ 57765123 (-)
G163825 LOC106561050 non-coding downstream 425954 57738768 ~ 57760329 (-)
G163807 NA non-coding downstream 469970 57716050 ~ 57716313 (-)
G164080 NA non-coding upstream 63098 58258020 ~ 58259366 (-)
G164195 NA non-coding upstream 237883 58432805 ~ 58433005 (-)
G164235 NA non-coding upstream 264355 58459277 ~ 58459589 (-)
G164257 NA non-coding upstream 275406 58470328 ~ 58470584 (-)
G164037 NA other downstream 11195 58173659 ~ 58175088 (-)
LOC110492612 LOC106561041 other downstream 54910 58118987 ~ 58200644 (-)
G164003 NA other downstream 68062 58111341 ~ 58118221 (-)
G163839 LOC106561050 other downstream 396900 57776469 ~ 57789383 (-)
G165742 NA other upstream 1287035 59481957 ~ 59482314 (-)
G165746 NA other upstream 1292539 59487461 ~ 59487840 (-)
G166541 NA other upstream 1724956 59919878 ~ 59920330 (-)

Expression


Co-expression Network