Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110492691 |
| gene name | LOC106561037 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 58355406 ~ 58389301 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ceramide kinase-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036951890.1 | False | 5032 | mRNA | 0.44 | 12 | 58357788 | 58389297 |
| XM_036951892.1 | False | 4942 | mRNA | 0.44 | 14 | 58357788 | 58389297 |
| XM_036951888.1 | False | 5081 | mRNA | 0.44 | 13 | 58357788 | 58389301 |
| TU187211 | False | 5313 | lncRNA | 0.42 | 2 | 58355406 | 58360739 |
| TU187215 | True | 682 | TUCP | 0.53 | 4 | 58362586 | 58363594 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492633 | LOC106561040 | coding | downstream | 109615 | 58208496 ~ 58248173 (-) |
| LOC110492612 | LOC106561041 | coding | downstream | 157144 | 58118987 ~ 58200644 (-) |
| LOC110492624 | NA | coding | downstream | 162866 | 58186283 ~ 58194922 (-) |
| LOC110492572 | ptpn5 | coding | downstream | 331790 | 57998305 ~ 58025998 (-) |
| dusp8a | LOC106561046 | coding | downstream | 363099 | 57928123 ~ 57994689 (-) |
| LOC110492741 | LOC106561034 | coding | upstream | 954858 | 59344159 ~ 59356495 (-) |
| LOC110492772 | LOC106561030 | coding | upstream | 1427424 | 59816725 ~ 59823875 (-) |
| LOC110492782 | LOC106561029 | coding | upstream | 1437323 | 59826624 ~ 59841614 (-) |
| LOC110492793 | LOC106561028 | coding | upstream | 1483616 | 59872917 ~ 59885714 (-) |
| LOC110492804 | lmod2 | coding | upstream | 1547620 | 59936921 ~ 59948593 (-) |
| G164080 | NA | non-coding | downstream | 98422 | 58258020 ~ 58259366 (-) |
| G163944 | NA | non-coding | downstream | 336312 | 58021094 ~ 58021476 (-) |
| G163819 | NA | non-coding | downstream | 562809 | 57794615 ~ 57794979 (-) |
| G163837 | LOC106561050 | non-coding | downstream | 592665 | 57761150 ~ 57765123 (-) |
| G163825 | LOC106561050 | non-coding | downstream | 597459 | 57738768 ~ 57760329 (-) |
| G164195 | NA | non-coding | upstream | 43504 | 58432805 ~ 58433005 (-) |
| G164235 | NA | non-coding | upstream | 69976 | 58459277 ~ 58459589 (-) |
| G164257 | NA | non-coding | upstream | 81027 | 58470328 ~ 58470584 (-) |
| G164262 | NA | non-coding | upstream | 86432 | 58475733 ~ 58475946 (-) |
| G164552 | NA | non-coding | upstream | 176429 | 58565730 ~ 58566380 (-) |
| G164037 | NA | other | downstream | 182700 | 58173659 ~ 58175088 (-) |
| G164003 | NA | other | downstream | 239567 | 58111341 ~ 58118221 (-) |
| G163839 | LOC106561050 | other | downstream | 568405 | 57776469 ~ 57789383 (-) |
| LOC110492469 | NA | other | downstream | 757570 | 57583975 ~ 57601508 (-) |
| G165742 | NA | other | upstream | 1092656 | 59481957 ~ 59482314 (-) |
| G165746 | NA | other | upstream | 1098160 | 59487461 ~ 59487840 (-) |
| G166541 | NA | other | upstream | 1530577 | 59919878 ~ 59920330 (-) |
| G166794 | LOC106561021 | other | upstream | 2013047 | 60402348 ~ 60406808 (-) |
| LOC110492691 | LOC106561037 | other | upstream | 1847 | 58355406 ~ 58389301 (-) |
