LOC118937284 (LOC106609580)


Basic Information

Item Value
gene id LOC118937284
gene name LOC106609580
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59387950 ~ 59390103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034527.1
atccaggctgcgtttctatcaaaAAACCAGAAACATTATTTGCCAATATTATAACTGGAGCTGGACATCTTTGGAGCTGAAGAATGAGGACAGCTTTTGTATGCTAACGTACACTCTTTAACAGTTTTACTGGATGAAAACACAGCAAGAAAACACATATGCCAATATGTAATAGTCATCTATTTTATTGCAGTATTGGTAGTTGGTTCAACAACTTGTTTTACTAGAGGACAAAAAACTGAATATGCATAACCCATATTTAATATTCATGCAGTGACTGAACAACAACTGCATTTCCACCCCCATCTCTAaaggcatagtatcatggcaagTCACATGTCAGGTCACctgtcaggtcagtcagtcacttATTGCTGCAGATGTGCTCAATAATGCTTGAGCATGTGATACTCCTGAAAGCATGGTGAAATACATAGAGGTGTATCACAAGCTAAACACATGTATTTTGTCATCTTCCTCTGCTTACTTCTCCTGGCACCAGACAGGCAGACTTTGCAATGCCTCCGTGTGCGACTACCTTGAGAAGCAGTTTGAGGGACTTTGCAGGGAAAATGCCGTGCAGTGAGGCGTAGGGGATTGTCTACAGCAGGATGACCCCCAGTGGATGGGCGCCGAGGGGTGTGGTGCTCCTCTAGCAGCTCTCTCATGAGGTTCTCTCTGTATTTTTGgtggtccaccttccctgtggctgacatggttgctgtatggacagtggagaggacatggacgtctcgcttgtcatgccactttactgccagctgttgaccGTTCTCCTGgaactccacctcccctctctgcaTCTTCCTGCATCCGAATGCCGGCATCCCCTTCCGGTTCGACCTGACTGTGCCACAGGCCCCTGTGCTGTTGGAGAGCAGATGCTGGAAGAGTGTGGGACTGCTGTACCAATTGTCCACGTACAAAGTGTGTCCCTTGCCGAGATGAGGAGCCAGCATGGTCATCACCACGGACCCGGACACCCCAAGCCCCTCATAATGTTGGATGTCAGTGGTGGACCCTGTGTAAACCAGTATTCTCCTAGGGAGTTCTTCTACTTCCTCAGTGGACAAGGGAAAttcagat

Function

NR:

description
PREDICTED: piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034527.1 True 1104 mRNA 0.48 3 59387950 59390103

Neighbor

gene id symbol gene type direction distance location
LOC110492721 LOC106561036 coding upstream 354583 58797383 ~ 59033367 (+)
LOC110492681 LOC106561133 coding upstream 1065399 58316277 ~ 58322551 (+)
LOC110492647 LOC106561039 coding upstream 1091204 58253604 ~ 58296746 (+)
LOC110492604 LOC106561042 coding upstream 1276770 58110123 ~ 58111180 (+)
LOC110492579 LOC106561044 coding upstream 1278507 58040338 ~ 58109443 (+)
LOC110492752 LOC106561032 coding downstream 12074 59402177 ~ 59643249 (+)
LOC118941102 NA coding downstream 82068 59472171 ~ 59477345 (+)
LOC110492759 gpr37 coding downstream 384060 59774163 ~ 59781857 (+)
LOC110501704 wasl coding downstream 510027 59900130 ~ 59922883 (+)
iqub iqub coding downstream 579603 59969706 ~ 59977321 (+)
G165409 NA non-coding upstream 6162 59316180 ~ 59381788 (+)
G165441 NA non-coding upstream 22323 59364039 ~ 59365627 (+)
G165404 NA non-coding upstream 77731 59310016 ~ 59310219 (+)
G165397 NA non-coding upstream 87254 59299739 ~ 59300696 (+)
G165395 NA non-coding upstream 88813 59298892 ~ 59299137 (+)
G165496 NA non-coding downstream 59446 59449549 ~ 59449785 (+)
G165501 NA non-coding downstream 64497 59454600 ~ 59454807 (+)
G165510 NA non-coding downstream 81794 59471897 ~ 59472121 (+)
G165514 NA non-coding downstream 93578 59483681 ~ 59483951 (+)
G163660 LOC106561040 other upstream 1171567 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 1455959 57928150 ~ 57931991 (+)
G162130 NA other upstream 2334308 57048314 ~ 57053642 (+)
G161687 NA other upstream 3135352 56245044 ~ 56252598 (+)
G160569 NA other upstream 3440705 55946143 ~ 55947245 (+)
G166131 lmod2 other downstream 555605 59945708 ~ 59953165 (+)
G166878 NA other downstream 1125529 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 1461329 60851417 ~ 60866455 (+)
G167288 NA other downstream 1672490 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 1842093 61232196 ~ 61232545 (+)

Expression


Co-expression Network