LOC110492772 (LOC106561030)


Basic Information

Item Value
gene id LOC110492772
gene name LOC106561030
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59816725 ~ 59823875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567256.2
CCGCGTATTACGCACAGAGGAGTCACGATGGACCAGTTCCCCCAGATAAAAAGGGGCGCTCCCCAGCTACTCCCCACCCTTGCCCTCTCCCTTCTGGCGTGTCTTAGTTTCGTCTCCCCCCTACCTACAACGGAGCCCCCACTGTTTGACGGTCATCCGTTTGTGGGTATATGGAATACCCCGACCCCTGCATGCAAGAGGCTGCAGATCCCACTGGACACCTGGTCCTTCAAAGCAGTGACCACGCCTGCTGCTGTTCCCGGTCAGTTCCTCACCCTGTTCTACGTCGACCGCCTGGGCCTGTACCCTCACGTTGACCCCAACAACCATCGCCAGTTCAATGGTGGCATCCCCCAAAAGGGCAACCTGACGGCCCACCTGATTAAGGCCTACGGTGACATCAATCATTACATCCCCTCTGACACGACCCCGGGTCTGGCCGTCATTGACTGGGAAGACTGGCGCCCCCTGTGGGACAGAAACTGGGGGTCCAAGAATATTTACCGTCAACTGTCCATCGCCTACGCTCGAGAGAAGGACCCCTCTTTGTCCCCATCACAAGCAACCACTGAGGCCAAGAAGCAGTTTCAGACTGCAGCCCGCAACTACATGGAGGGAACCATGATGCTAGGTATCAGCCAGCGGCCCAGCCAGCAATGGGGGTTCTATCTGTTCCCCGATTGCTACAACTATGGCTGGGAGAAGCCAGACTACACAGGGCAATGCTCCGACAAGACCAAGAGCCAGAACGACGAGCTTTTGTGGCTTTGGGAGTCCAGCACGGCTCTATACCCTTCAGTCTACCTGCCTGCGTCGCTGAACAACAGCGCCAACGTGGCACTTTTCGTCCGAAACCGCGTTCAGGAGGCAGTGAGGGTGGCAGCTCTGCCCAAACGCCCCTACACTGTGCCCATCTATGTGTACTCATGCCCACTCTACCGTGACCGAAATAAGTTTCTCAGTACGGAGGATCTGATCAGAAGTATTGGAGAAAGTGCAGCATTGGGGGCTTCCGGGTCAGTGCTCTGGGGAGCCAGTGCCGACTATACTGACAAGgcTTCATGTGAAGCATTATCCACATACCTGACATCCACCCTCAACCCATACATCGCTAACGTGACCGCTGCCGCCAAACTCTGTAGTGACGTCCTTTGCCAGGGCAATGGCCGCTGTGTCAGAAAGGACTACAACTCCAATGACTACCTGCACCTGAACCCGGACAACTTCCGCCTCCTAAAGTCCCAGCGAAAGTACGTGGCCATCGGAATACCCTCCTCTGCTGACCTACTCACCTTAGCAGAGAAGTTCACCTGCCAGTGCTACACAGGCAGTAGCTGCTCACCCCAGTTATCACGTCCCACGACCCCAATGGTTATTCAAGTATAGCCTCCCTGGGGGTTCACTCTTAAAAAATCTCACAAATCTGATGAATGCATTCACAGTATGGGTACGTGTATATGATTGAAGCAAATAATCATGGTTCTCATTTTTAGATTAACAGTATTTTTTGGAGAATCCTGCACTATAGGACTGAATCACTAAAGTAAGACATTACATATTTATGTCAGAataaaattcaaaaatattttacaTTGTTGTGAGTATTA

Function

NR:

description
hyaluronidase PH-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567256.2 True 1607 mRNA 0.53 4 59816725 59823875

Neighbor

gene id symbol gene type direction distance location
LOC110492741 LOC106561034 coding downstream 460230 59344159 ~ 59356495 (-)
LOC110492691 LOC106561037 coding downstream 1427424 58355406 ~ 58389301 (-)
LOC110492633 LOC106561040 coding downstream 1568552 58208496 ~ 58248173 (-)
LOC110492612 LOC106561041 coding downstream 1616081 58118987 ~ 58200644 (-)
LOC110492624 NA coding downstream 1621803 58186283 ~ 58194922 (-)
LOC110492782 LOC106561029 coding upstream 2749 59826624 ~ 59841614 (-)
LOC110492793 LOC106561028 coding upstream 49042 59872917 ~ 59885714 (-)
LOC110492804 lmod2 coding upstream 113046 59936921 ~ 59948593 (-)
LOC110492814 asb15 coding upstream 128117 59951992 ~ 59963149 (-)
ptprz1a ptprz1 coding upstream 469137 60293012 ~ 60372642 (-)
G166081 NA non-coding downstream 12672 59803847 ~ 59804053 (-)
G166080 NA non-coding downstream 14713 59801766 ~ 59802012 (-)
G165847 NA non-coding downstream 169355 59647074 ~ 59647370 (-)
G165846 NA non-coding downstream 170053 59646458 ~ 59646672 (-)
G165845 NA non-coding downstream 171068 59645444 ~ 59645657 (-)
G166099 NA non-coding upstream 6934 59830809 ~ 59831085 (-)
G166105 NA non-coding upstream 19450 59843325 ~ 59843603 (-)
G166550 LOC106581475 non-coding upstream 108610 59932485 ~ 59998041 (-)
G166665 NA non-coding upstream 304742 60128617 ~ 60134108 (-)
G165746 NA other downstream 328885 59487461 ~ 59487840 (-)
G165742 NA other downstream 334411 59481957 ~ 59482314 (-)
G164037 NA other downstream 1641637 58173659 ~ 58175088 (-)
G166541 NA other upstream 96003 59919878 ~ 59920330 (-)
G166794 LOC106561021 other upstream 578473 60402348 ~ 60406808 (-)
G166877 LOC106613263 other upstream 691351 60515226 ~ 60515522 (-)
LOC110492890 LOC106561126 other upstream 716314 60537619 ~ 60559746 (-)

Expression


Co-expression Network