XLOC_020658 (necap2)


Basic Information

Item Value
gene id XLOC_020658
gene name necap2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 341990 ~ 347424 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040855
GCGGAAGCGCAGTGACGTGTCGGTTGTTTTGCCGTGATGATGGCGGATGGGAACGCGCTGTATGAGTCGGTGCTGTGCGTGAAGGCAGAAGTTCACGTTTACCGAATCCCGCCCAGAAGCTCGAACCGCGGATACCGGGCTGCGGACTGGAAGCTGGATGAGCCGGCGTGGAGCGGTCGAATGAAGATCATAGCCAAGGGGAAAACAGCCTACATTAAACTAGAGGACAGAAAcacaggtgagCTGTTTGCTCAGGCTGCAGTGGAGCAGTACCCCAGCAGTGTGGTGGAGGCCGTGGTCGACTCCAGCCGGTATTTCGTCATCAGAATCGAGGATGGAAAcggacggCATGCCTTTATCGGCCTCGGGTTCGCAGACCGCGGAGACTCTTTCGACTTTAACGTCGCTCTGCAGGACCACtttaaGTGGGTGAAGCAGGAGAGTGATCTGGCCCGTCAGGAGGCCGTGCAGGACTCGGTGCCCAAACTGGACCTGGGCTTCAAAGAGGGTCAAACCATCAAGATCAACATAGGGAACATGAAGAAGAAGGAGTCTGGTGGTCCGCTGCGCTCTCGAGCTGCTGCTGGTCTTCTTCCTCCTCCACCCGCAGGGAAAGCTGGAGCTGTGCTTCCTCCACCCGCAgcacacaccaccaccaccacagcGCCCGCTCCACCCAGCACAGGCACACTACTAGACTTTGGAGACTCCGCCCCAATTGTGGCTCCACCCTCTCAGGACATGTGGGGTGATTTCACTTCTGCAGGATCTGGgtctgCTCAGGACTCTCGCTCTGGATCCGGATGGGTTCAGTTCTAAAGTCTCGCCGCTGGACGCTCAGAAAGGGAACGTGCGGAGCTGTGAATGTGACGACGCCGTATTTCCACAGATGTTTTCTATGCAATCGTTCAGAAATCACTGCATTCCAGCTGCTGTAGactctcaacacacacacacacacacacacacacacacacacatcagcatcATGTTTGCTGAAGCGCTTCACTATAATGACTCTATAATCTCCCCTGTCTGCCATTGGCTGGTCATACTAGCCCCGCCCCCAATAACAGAATAAAGAGAGTCAGAGTGTTTACAGGAAGTTCCTACGCTGACTTCCTCTTATTGACTCCACATCAGAGTGTAAGTATTGAGCACTCAGACCCTTCTCATGTCCTCCTTTATCTGAGTGGTGTGTGTTTAGCGTGTGTTGATGTCTGAAGCAGCGCTCGTGTCCTCATGTGTTGTTATTTACCCTCGGTCATGTGATCAGATGCCGCTCCATCAGATCAGGACTCTGGcttatgctgtgtgtgtgtgtgtgtgtgtcagcagatgattttcagtgtttatatgtatatctatatttTAACTCCCCCAGACTTTATATGCTTTTACTTCGTGGTGATTTAGAGTTTTATTCTTGATATTGTCTGAATCTCTTCTTCAAGTGCCTTCATCAGACACCTGTAGAGTGGACAGAGCTCTGCTTATAGATCAATAAACCTGTTCTTGGTATACAGA
>TCONS_00040856
gtgtgtgcatatgtgtgtgtgtgtgtgtgtgtgtgtttgtgcgcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcccgCAGGTGGGTGAAGCAGGAGAGTGATCTGGCCCGTCAGGAGGCCGTGCAGGACTCGGTGCCCAAACTGGACCTGGGCTTCAAAGAGGGTCAAACCATCAAGATCAACATAGGGAACATGAAGAAGAAGGAGTCTGGTGGTCCGCTGCGCTCTCGAGCTGCTGCTGGTCTTCTTCCTCCTCCACCCGCAGGGAAAGCTGGAGCTGTGCTTCCTCCACCCGCAgcacacaccaccaccaccacagcGCCCGCTCCACCCAGCACAGGCACACTACTAGACTTTGGAGACTCCGCCCCAATTGTGGCTCCACCCTCTCAGGACATGTGGGGTGATTTCACTTCTGCAGGATCTGGgtctgCTCAGGACTCTCGCTCTGGATCCGGATGGGTTCAGTTCTAAAGTCTCGCCGCTGGACGCTCAGAAAGGGAACGTGCGGAGCTGTGAATGTGACGACGCCGTATTTCCACAGATGTTTTCTATGCAATCGTTCAGAAATCACTGCATTCCAGCTGCTGTAGactctcaacacacacacacacacacacacacacacacacacatcagcatcATGTTTGCTGAAGCGCTTCACTATAATGACTCTATAATCTCCCCTGTCTGCCATTGGCTGGTCATACTAGCCCCGCCCCCAATAACAGAATAAAGAGAGTCAGAGTGTTTACAGGAAGTTCCTACGCTGACTTCCTCTTATTGACTCCACATCAGAGTGTAAGTATTGAGCACTCAGACCCTTCTCATGT
>TCONS_00040857
AGTGACGTGTCGGTTGTTTTGCCGTGATGATGGCGGATGGGAACGCGCTGTATGAGTCGGTGCTGTGCGTGAAGGCAGAAGTTCACGTTTACCGAATCCCGCCCAGAAGCTCGAACCGCGGATACCGGTGAGCCCCCGCCGATCAGCAGCGCCGGTTAACGAGCCGTTACCGCTgcacacaacaacaacactgaGGGCTGCGGACTGGAAGCTGGATGAGCCGGCGTGGAGCGGTCGAATGAAGATCATAGCCAAGGGGAAAACAGCCTACATTAAACTAGAGGACAGAAAcacaggtgagCTGTTTGCTCAGGCTGCAGTGGAGCAGTACCCCAGCAGTGTGGTGGAGGCCGTGGTCGACTCCAGCCGGTATTTCGTCATCAGAATCGAGGATGGAAAcggacggCATGCCTTTATCGGCCTCGGGTTCGCAGACCGCGGAGACTCTTTCGACTTTAACGTCGCTCTGCAGGACCACtttaaGTGGGTGAAGCAGGAGAGTGATCTGGCCCGTCAGGAGGCCGTGCAGGACTCGGTGCCCAAACTGGACCTGGGCTTCAAAGAGGGTCAAACCATCAAGATCAACATAGGGAACATGAAGAAGAAGGAGTCTGGTGGTCCGCTGCGCTCTCGAGCTGCTGCTGGTCTTCTTCCTCCTCCACCCGCAGGGAAAGCTGGAGCTGTGCTTCCTCCACCCGCAgcacacaccaccaccaccacagcGCCCGCTCCACCCAGCACAGGCACACTACTAGACTTTGGAGACTCCGCCCCAATTGTGGCTCCACCCTCTCAGGACATGTGGGGTGATTTCACTTCTGCAGGATCTGGgtc
>TCONS_00040858
TTCAGGGCTGCGGACTGGAAGCTGGATGAGCCGGCGTGGAGCGGTCGAATGAAGATCATAGCCAAGGGGAAAACAGCCTACATTAAACTAGAGGACAGAAAcacaggtgagCTGTTTGCTCAGGCTGCAGTGGAGCAGTACCCCAGCAGTGTGGTGGAGGCCGTGGTCGACTCCAGCCGGTATTTCGTCATCAGAATCGAGGATGGAAAcggacggCATGCCTTTATCGGCCTCGGGTTCGCAGACCGCGGAGACTCTTTCGACTTTAACGTCGCTCTGCAGGACCACtttaagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaagagactATGTGTCTGGCCTGCAAGGTTGATTCTCAtgatgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgcatgtgtgtgtgtgcgtgtgtgtttgtgcgcgtgtgtgcatatgtgtgtgtgtgtgtgtgtgtgtgtttgtgcgcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcccgCAGGTGGGTGAAGCAGGAGAGTGATCTGGCCCGTCAGGAGGCCGTGCAGGACTCGGTGCCCAAACTGGACCTGGGCTTCAAAGAGGGTCAAACCATCAAGATCAACATAGGG

Function

symbol description
necap2 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be part of clathrin vesicle coat. Orthologous to human NECAP2 (NECAP endocytosis associated 2).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030125 clathrin vesicle coat cellular_component
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-67 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be part of clathrin vesicle coat. Orthologous to human NECAP2 (NECAP endocytosis associated 2).

Ensembl:

ensembl_id ENSDARG00000046002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040855 False 1527 mRNA 0.52 8 341990 347424
TCONS_00040856 False 864 lncRNA 0.53 4 342339 346253
TCONS_00040857 False 834 nonsense_mediated_decay 0.58 7 344918 347414
TCONS_00040858 True 672 lncRNA 0.55 3 346034 346964

Neighbor

gene id symbol gene type direction distance location
XLOC_020657 NA coding downstream 26610 313710 ~ 315380 (-)
XLOC_020656 CABZ01079179.1 coding downstream 47290 291091 ~ 294700 (-)
XLOC_020655 CABZ01079178.1 coding downstream 59492 278790 ~ 282498 (-)
XLOC_020654 myhz1.1 coding downstream 63662 268352 ~ 278328 (-)
XLOC_020653 zgc:66156 coding downstream 78873 254390 ~ 263117 (-)
XLOC_020659 tmem240b coding upstream 1697 349121 ~ 354592 (-)
XLOC_020660 ssu72 coding upstream 11849 359273 ~ 367569 (-)
XLOC_020661 FNDC10 coding upstream 23491 370915 ~ 372723 (-)
XLOC_020662 ora3 coding upstream 33719 381143 ~ 382955 (-)
XLOC_020663 CABZ01072989.1 coding upstream 39649 387073 ~ 392224 (-)
XLOC_020646 NA non-coding downstream 240543 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 305874 27146 ~ 36116 (-)
XLOC_020664 NA non-coding upstream 45195 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 312493 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 352789 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 385820 733244 ~ 735244 (-)
XLOC_020676 NA non-coding upstream 391876 739300 ~ 760886 (-)

Expression


Co-expression Network