LOC110492782 (LOC106561029)


Basic Information

Item Value
gene id LOC110492782
gene name LOC106561029
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59826624 ~ 59841614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567266.2
CTGTCACAGGAaactctcgctttccctctcctgctccctctccatcgctctcttcCTTCACTGTATATAAGTGTGGTGGGTGGATTGTGTGTCAGACAGAGTAAAGGAATGCCAGAGTGtcggacagatggagaggggcACAATCCCTGTGCCTCCCCCTGGATTGGCTGATGGTGATGGTCGCCATACTGAATCTACAGATGATTGACGATCCCTTCAGTTGAACCAAGCCCCAGGATGATAATGTTGCCCGTCAGCGGTGGCCACCATCACCACGTCGTGCCTGTGGCTTGTGCCCTCACCTGCTCCTGGCTCCTGCTACTTTTTCATGCCGTCTTTGGCCAGAAGCCCGCCAAGCTGCCCCTGGTGGGCCGCAAGCCCTTCATTGCTGCCTGGAATGCACCGCTGGACCTGTGCACTGTCAAGTACAATGTCCACACCAACCTGGAGCAACTCTTCCACATCAGTGGCAGCCCGCGGGCCATCCGCACTGGCCAGAATGTCACCATTTTCTATGCCAATCGGCTGGGCCTCTACCCTTTTTACACGGACCAGGGCGTCCCCATAAATGGAGGCCTCCCCCAGAACTGCAGCCTGGAGGCCCACCTCTTCAAGACGTACAAGGACATCGTTCATTTTATCCCCTCTGAGGACTTTGCTGGACTGGCAGTCATCGACTGGGAGTATTGGCGGCCTCAGTGGAACCGCAACTGGCACAAGAAGGACATCTACCGATGCAAGTCCCGGGAGATGATCGCACAGGCCTATGTCAACGTGACTCCATCACAAATCGAGGTGCTGGCACGAAAACGCTTTGAGAGGAGTGCCCAGGCATTCATGCAGAGGACAGTCCAGCTAGGGACGCGCCTTCGCCCCAGTGGACTCTGGGGATTCTACCTCTACCCAGACTGCCACAACTACAACCTGCATGAGCACAACTACACAGGCTCCTGCCCCCTGCTAGAGAGCCTGCGTAATGACGAGCTGCTCTGGTTGTGGAATAGCAGCACAGCATTGTTCCCCTCAGTGGCTATCAGGAAGAGTCAAACAGATAGTGTCAGCAATCTCCATTTCTCCCAGTTCAGGGTGCTGGAGTCTCTGAGGATAGCTGGGCTTACCTCGCACGACTTTGAGCTGCCCACATTTGTGTACACACGCCTAGGGTACAGGGATGAGGCTATGGCCTTCCTCACCACGACAGACTTGATCCACACCATTGGTGAGAGTGCTGCTTTGGGGGCTGCAGGTTTTGTGATCTGGGGAGACCTCAACCTCACTTCATCCAAACACAACTGCACAAAGGTAAAGTCCTTCCTCAAACACCGCCTGGGTCAGTACATCACCAATGTGACACGGGCCGCAGAGGTCTGCAGTGACTTCCTGTGCCAGAGCAACGGCCGCTGTGTCCGCAGGGACCTCCACGCCCGGTACTACCTCCACCTGAGCGGAGACAGCTACCACATTCAGCCCTCGGGGGACGGGGACTTTGCGGTCACGGGCAAGCACTCGCTGCGTGAGCTCCAACTACTGGCCAAGAGATTCCACTGTCACTGCTATGAGGGACACGCCGGGGAGAAGTGTGATAGCCTGAACAAGGTGGtggcagaagaggaggaagaggaggggggagagttggaggaggggggagaggtggaggatggggagaAGGAGCAGAGGGAAAGTGCCGCTCCACAAACTGGGAAGAGCTTTAGCTTGGTGGTGTTGCTCCTTCTATTGAATGTCTCCTTTGTGTGACTGTGGTATGATAATAGCACTTTAAGTGTCTTGTGTTGTTTGGCGTAGGGAAGACAGAGCTTGAAGTCACTTCCATGGGAACTGCTATTACGTAATGCTGTGCCGTCGTCCTACAGGGTCCTGTATTATAGTGGGTAAAGCTTTACTTGAAGGGTACCTGCATAATGACTACATGACACATCCATAACTCATACATACTTCATTTGTAAAGTCTGATTATATATAACAATGGGACCAATATAAACTCTGGCCGAGTCTTTTGTCATTTTGCATTTAAGCATGCGTTGCCAGCAACAGCATTTATTTACTGAAAGTGAGCTAACTTCCTAACTTGTCACCTCACCGCTATCACTACTGGTACCATTGTAAGCACTGACAATGAAAAGGTGTCTGTGAGTCTTGCTCCAGTCTTCCCTAATACTGTGTAGTTTCATATAGCAATAAGCTTGAcatttgagtttattttttaatGGTAAGGCTGTCATTGAATGATAATTCATTTCAATAGATGATCTAATTTGGCTATTAAAGGCACAATAAAGTTGAAAAATTCCTAGACACTGCGCAATTTGAAAAAGCCTTGTGTATTTTTTTATCGATCATGTTAGGAACCACATCACATTTGGGCCACAAGACCTTCCACATGTGTAATAGGTGACATATAAGAATGTTGTGCAACATCGGTGCTATGGAGGTTGACAGTTGTTTCTTTTCCACACCTTTCTGCAAACATTGGTATTCAAGCAAATTCATATTCAGACAGAACATCTCATCGATTCACCGTTCAAAAAGAATCCCAAACCTTACTTATCACTCTGACATTGAAGCTTGAAGTGCAGATAGAAAGTGGGTAACCAGAAATTGAAGAGACAAGGTATTTAATCTCATCACCCTTTGCCTTTCCTCCTTAGTACTTTGTCAATACTAATTAGGACACTTAGAagctattttttttttgcaacatCAAATTCAGTGTCTTCTACCCAGGTTACTCTTGAAATGTGTGTTGAAAACTGTGTAAAATGATTTATGTACAATTTTCATACTAAACTGGAATGTAAAACCATTATATGTCACATATGGACAATGTTTTATTTGAATGGAAAGAATAGAAATGTTTAAAATCTTGCAAGTTttgttcatgttgttgtttaCCCAATGCACGATGGCACTGTACAATGTACTCCAAATGTTCTTTCCAACGGCTAGTCTTATAACTGATGTAGCAGCAATATAAGGCAAGTTTCTTTGTGGATGCTTTACTTTt
>TU189223
AAGAGCTTTAGCTTGGTGGTGTTGCTCCTTCTATTGAATGTCTCCTTTGTGTGACTGTGGTATGATAATAGCACTTTAAGTGTCTTGTGTTGTTTGGCGTAGGGAAGACAGAGCTTGAAGTCACTTCCATGGGAACTGCTATTACGTAATGCTGTGCCGTCGTCCTACAGGGTCCTGTATTATAGTGGGTAAAGCTTTACTTGAAGGGTACCTGCATAATGACTACATGACACATCCATAACTCATACATACTTCATTTGTAAAGTCTGATTATATATAACAATGGGACCAATATAAACTCTGGCCGAGTCTTTTGTCATTTTGCATTTAAGCATGCGTTGCCAGCAACAGCATTTATTTACTGAAAGTGAGCTAACTTCCTAACTTGTCACCTCACCGCTATCACTACTGGTACCATTGTAAGCACTGACAATGAAAAGGTGTCTGTGAGTCTTGCTCCAGTCTTCCCT
>TU189225
CTAGGGACGCGCCTTCGCCCCAGTGGACTCTGGGGATTCTACCTCTACCCAGACTGCCACAACTACAACCTGCATGAGCACAACTACACAGGCTCCTGCCCCCTGCTAGAGAGCCTGCGTAATGACGAGCTGCTCTGGTTGTGGAATAGCAGCACAGCATTGTTCCCCTCAGTGGCTATCAGGAAGAGTCAAACAGATAGTGTCAGCAATCTCCATTTCTCCCAGTTCAGGGTGCTGGAGTCTCTGAGGATAGCTGGGCTTACCTCGCACGACTTTGAGCTGCCCACATTTGTGTACACACGCCTAGGGTACAGGGATGAGGCTATGGCCTTCCTCACCACGACAGACTTGATCCACACCATTGGTGAGAGTGCTGCTTTGGGGGCTGCAGGTTTTGTGATCTGGGGAGACCTCAACCTCACTTCATCCAAACACAACTGCACAAAGGTAAAGTCCTTCCTCAAACACCGCCTGGGTCAGTACATCACCAATGTGACACGGGCCGCAGAGGTCTGCAGTGACTTCCTGTGCCAGAGCAACGGCCGCTGTGTCCGCAGGGACCTCCACGCCCGGTACTACCTCCACCTGAGCGGAGACAGCTACCACATTCAGCCCTCGGGGGACGGGGACTTTGCGGTCACGGGCAAGCACTCGCTGCGTGAGCTCCAACTACTGGCCAAGAGATTCCACTGTCACTGCTATGAGGGACACGCCG

Function

NR:

description
hyaluronidase-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567266.2 False 3022 mRNA 0.48 4 59826624 59841614
TU189223 False 470 lncRNA 0.56 1 59827475 59827944
TU189225 True 715 TUCP 0.45 3 59828076 59830015

Neighbor

gene id symbol gene type direction distance location
LOC110492772 LOC106561030 coding downstream 2749 59816725 ~ 59823875 (-)
LOC110492741 LOC106561034 coding downstream 470129 59344159 ~ 59356495 (-)
LOC110492691 LOC106561037 coding downstream 1437323 58355406 ~ 58389301 (-)
LOC110492633 LOC106561040 coding downstream 1578451 58208496 ~ 58248173 (-)
LOC110492612 LOC106561041 coding downstream 1625980 58118987 ~ 58200644 (-)
LOC110492793 LOC106561028 coding upstream 31303 59872917 ~ 59885714 (-)
LOC110492804 lmod2 coding upstream 95307 59936921 ~ 59948593 (-)
LOC110492814 asb15 coding upstream 110378 59951992 ~ 59963149 (-)
ptprz1a ptprz1 coding upstream 451398 60293012 ~ 60372642 (-)
LOC110492857 LOC106561020 coding upstream 578887 60419131 ~ 60437560 (-)
G166081 NA non-coding downstream 22571 59803847 ~ 59804053 (-)
G166080 NA non-coding downstream 24612 59801766 ~ 59802012 (-)
G165847 NA non-coding downstream 179254 59647074 ~ 59647370 (-)
G165846 NA non-coding downstream 179952 59646458 ~ 59646672 (-)
G165845 NA non-coding downstream 180967 59645444 ~ 59645657 (-)
G166105 NA non-coding upstream 1711 59843325 ~ 59843603 (-)
G166550 LOC106581475 non-coding upstream 90871 59932485 ~ 59998041 (-)
G166665 NA non-coding upstream 287003 60128617 ~ 60134108 (-)
G166669 NA non-coding upstream 305927 60147541 ~ 60156968 (-)
G166677 NA non-coding upstream 317841 60159455 ~ 60181300 (-)
G165746 NA other downstream 338784 59487461 ~ 59487840 (-)
G165742 NA other downstream 344310 59481957 ~ 59482314 (-)
G164037 NA other downstream 1651536 58173659 ~ 58175088 (-)
G166541 NA other upstream 78264 59919878 ~ 59920330 (-)
G166794 LOC106561021 other upstream 560734 60402348 ~ 60406808 (-)
G166877 LOC106613263 other upstream 673612 60515226 ~ 60515522 (-)
LOC110492890 LOC106561126 other upstream 698575 60537619 ~ 60559746 (-)
G167723 NA other upstream 837109 60678723 ~ 60679041 (-)
G166099 NA non-coding upstream 2865 59830809 ~ 59831085 (-)
LOC110492782 LOC106561029 other upstream 132 59826624 ~ 59841614 (-)

Expression


Co-expression Network