LOC110492814 (asb15)


Basic Information

Item Value
gene id LOC110492814
gene name asb15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59951992 ~ 59963149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037390.1
CCCTGCTCTACAGTGCCCTGGAGagtaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttggtagaGAGGCGATTCAGTTCAGGCATGGCACAAATTCCACTACAATCCCTCTGTCTGGACCGGGTGGGACCCGTGATTTCAACAGAACTAGATTTCACAGCTATGGATCCTGACGACCTGGACGAAGATCGACTGCTTGATTACGACATTCAGATGAGCATTCAGGAGTCGTGCTACAAATATCATTATCATCCTTAGAGAGtgATGAACATCTGAAGATCCTAAAGGCTATTGATCGAGGTCACTGAGAATTTTTATTCTGATAACCACTAGAAGGGCAATCAGACTTTCAGGCAAGAGTCCCGTTCACTCTGCAGCCGACAGAGTCCATGTACAATGCCTGGAGCTACTCGTGGAAAAGGGCTTTGATGTCAACGCTCTCCTAGACCTTCACATCTCTGAagactacagagacatgagaaaaAGTGCATTGTACTTTACTGTCTCTAATGGATACGTGACCTGCACTGAAATGCTGCTGAACACAGGAGACAAACCTGACCTGGCCGCTCTATTCTGCCTCGTGGTGGCGATGAGAGATGGGCAGTACGAGATTGCAAAGCTGCTTTTGGCCAGACATGCAGACATCAATTGTTACTTTTCCGTGTTCTGTAATTTCATCAGAGTTTCTTGGCTGTTGCACTTGGCTGGGAGAGCAGTGTGGATCTGTAACggaattcctcttcttcagaggaggagtagcaaggatcagaccaatgtgcagcgtggtcattttagagaatttggcagtatgtccaaccagcctcacaaccgcagatcacgtGCAACCAGCCAGCCCGGGACCTCCACATCCGAGTTCTTCACCTgagggattgtctgagaccagccacctggacagctgatgaaattgaggagtatttctgtctgtaataaatcccaTTTGTGTGAAAAAACAAATTCAGATTGGCTGGGGCTGACTCCcccactgcccagtcatgtgaaatccgtagattagcgcctaatgaatttatttcagtcgccggattttcttatatg
>XR_005037391.1
ACTACTTTGCCCTGCTCTACAGTGCCCTGGAGagtaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttggtagaGAGGCGATTCAGTTCAGGCATGGCACAAATTCCACTACAATCCCTCTGTCTGGACCGGGTGGGACCCGTGATTTCAACAGAACTAGATTTCACAGGTCGGGAGCACGGTGATAGTAGGCCACATGGTAACATCGCTATTTCCTCTGAAGCTATGGATCCTGACGACCTGGACGAAGATCGACTGCTTGATTACGACATTCAGATGAGCATTCAGGAGTCGTGCTACAAATATCATTATCATCCTTAGAGAGtgATGAACATCTGAAGATCCTAAAGGCTATTGATCGAGGTCACTGAGAATTTTTATTCTGATAACCACTAGAAGGGCAATCAGACTTTCAGGCAAGAGTCCCGTTCACTCTGCAGCCGACAGAGTCCATGTACAATGCCTGGAGCTACTCGTGGAAAAGGGCTTTGATGTCAACGCTCTCCTAGACCTTCACATCTCTGAagactacagagacatgagaaaaAGTGCATTGTACTTTACTGTCTCTAATGGATACGTGACCTGCACTGAAATGCTGCTGAACACAGGAGACAAACCTGACCTGGCCGCTCTATTCTGCCTCGTGGTGGCGATGAGAGATGGGCAGTACGAGATTGCAAAGCTGCTTTTGGCCAGACATGCAGACATCAATTGTTACTTTTCCGTGTTCTGTAATTTCATCAGAGTTTCTTGGCTGTTGCACTTGGCTGGGAGAGCAGTGTGGATCTGTAACggaattcctcttcttcagaggaggagtagcaaggatcagaccaatgtgcagcgtggtcattttagagaatttggcagtatgtccaaccagcctcacaaccgcagatcacgtGCAACCAGCCAGCCCGGGACCTCCACATCCGAGTTCTTCACCTgagggattgtctgagaccagccacctggacagctgatgaaattgaggagtatttctgtctgtaataaatcccaTTTGTGTGAAAAAACAAATTCAGATTGGCTGGGGCTGACTCCcccactgcccagtcatgtgaaatccgtagattagcgcctaatgaatttatttcagtcgccggattttcttatatg

Function

symbol description
asb15 Predicted to be involved in intracellular signal transduction and protein ubiquitination. Predicted to be located in cytosol.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037390.1 False 1087 mRNA 0.47 6 59951992 59963140
XR_005037391.1 True 1150 mRNA 0.47 6 59951992 59963149

Neighbor

gene id symbol gene type direction distance location
LOC110492804 lmod2 coding downstream 3399 59936921 ~ 59948593 (-)
LOC110492793 LOC106561028 coding downstream 66278 59872917 ~ 59885714 (-)
LOC110492782 LOC106561029 coding downstream 110378 59826624 ~ 59841614 (-)
LOC110492772 LOC106561030 coding downstream 128117 59816725 ~ 59823875 (-)
LOC110492741 LOC106561034 coding downstream 595497 59344159 ~ 59356495 (-)
ptprz1a ptprz1 coding upstream 329863 60293012 ~ 60372642 (-)
LOC110492857 LOC106561020 coding upstream 457352 60419131 ~ 60437560 (-)
ppp1r3ab LOC106561019 coding upstream 485729 60448878 ~ 60470558 (-)
LOC110492890 LOC106561126 coding upstream 574470 60537619 ~ 60559746 (-)
LOC110492911 LOC106561018 coding upstream 661993 60625142 ~ 60627473 (-)
G166105 NA non-coding downstream 108389 59843325 ~ 59843603 (-)
G166099 NA non-coding downstream 120907 59830809 ~ 59831085 (-)
G166081 NA non-coding downstream 147939 59803847 ~ 59804053 (-)
G166080 NA non-coding downstream 149980 59801766 ~ 59802012 (-)
G166665 NA non-coding upstream 165468 60128617 ~ 60134108 (-)
G166669 NA non-coding upstream 184392 60147541 ~ 60156968 (-)
G166677 NA non-coding upstream 196306 60159455 ~ 60181300 (-)
G166712 NA non-coding upstream 242747 60205896 ~ 60221876 (-)
G166750 NA non-coding upstream 310243 60273392 ~ 60273650 (-)
G166541 NA other downstream 31662 59919878 ~ 59920330 (-)
G165746 NA other downstream 464152 59487461 ~ 59487840 (-)
G165742 NA other downstream 469678 59481957 ~ 59482314 (-)
LOC110492691 LOC106561037 other downstream 1588398 58355406 ~ 58389301 (-)
G166794 LOC106561021 other upstream 439199 60402348 ~ 60406808 (-)
G166877 LOC106613263 other upstream 552077 60515226 ~ 60515522 (-)
G167723 NA other upstream 715574 60678723 ~ 60679041 (-)
G167706 LOC106561017 other upstream 772822 60695263 ~ 60740351 (-)

Expression

LOC110492814(asb15) Expression in all Baseline Samples

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LOC110492814(asb15) Expression in each Bioproject

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LOC110492814(asb15) Expression in each Sample
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Co-expression Network